ViewGene
Gene ID:
ChromosomeID:
GC_ORFID:
Genome Location:
proS proS PA0957 PA0957 5581 5581 oprD oprD PA0959 PA0959 PA0960 PA0960 4954 4954 PA0962 PA0962 aspS aspS PA0964 PA0964 ruvC ruvC ruvA ruvA ruvB ruvB PA0968 PA0968 tolQ tolQ 4824 4824 tolR tolR tolA tolA tolB tolB oprL oprL PA0974 PA0974 5582 5582 PA0975 PA0975 PA0976 PA0976 7294 7294 RS02 RS02
GeneID:3921
TrivialName:PA14_51790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51790
AltLocusName:PA0966
Sequence Length: 606
Protein Length:201
Start: 4599862
Stop: 4599257
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04355.1|AE004530_8 (AE004530) Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1]
Identities = 201/201 (100%), Positives = 201/201 (100%)
Sequence:
GTGATCGGACGCTTGCGTGGCACCCTGGCGGAGAAACAGCCGCCGCACCTGATCCTCGATGTGAATGGCGTC
GGCTATGAAGTGGAAGTGCCGATGACGACCCTCTATCGGTTGCCTTCGGTAGGCGAGCCGGTGACCTTGCAT
ACCCATCTGGTTGTGCGTGAGGATGCGCACTTGCTCTATGGCTTCGCCGAAAAGCGCGAGCGAGAGCTGTTC
CGTGAGCTGATCCGACTCAACGGCGTGGGTCCGAAACTGGCTCTGGCGCTGATGTCGGGCCTGGAAGTGGAC
GAACTGGTGCGTTGCGTCCAGGCACAGGACACCTCAACCCTGGTGAAGATCCCCGGTGTTGGCAAGAAGACC
GCCGAGCGCCTGCTGGTGGAGTTGAAGGACCGCTTCAAGGCTTGGGAAAACATGCCCACGATTGCACCGTTG
GTGATGGAACCCCGTGCCAGCGCTACAGTCTCAAGCGCCGAGGCCGATGCAGTCAGCGCGCTGATCGCCCTC
GGCTTCAAGCCACAGGAAGCCAGTCGTGCCGTCGCAGCCGTACCGGGAGAGGATTTGTCCAGCGAAGAAATG
ATCCGCCAGGCCCTGAAGGGCATGGTCTAG
Translation:
MIGRLRGTLAEKQPPHLILDVNGVGYEVEVPMTTLYRLPSVGEPVTLHTHLVVREDAHLLYGFAEKRERELF
RELIRLNGVGPKLALALMSGLEVDELVRCVQAQDTSTLVKIPGVGKKTAERLLVELKDRFKAWENMPTIAPL
VMEPRASATVSSAEADAVSALIALGFKPQEASRAVAAVPGEDLSSEEMIRQALKGMV*
AnnotationID:3928GeneID:3921
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 12:12:31
Gene Name:ruvA
Confidence Code:1
GeneProduct:Holliday junction DNA helicase RuvA
Cell Localization:()
Synonyms:PA0966
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0632, RuvA, Holliday junction resolvasome, DNA-binding subunit [DNA replication,
recombination, and repair].
       CD-Length = 201 residues, 100.0% aligned
       Score =  238 bits (610), Expect = 3e-64






   
Genomic Context:
operon:orf26, ruvCAB






   
Comment:


















    ReferenceID:14963




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24987




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32060




  
Author/Investigator(s):
        Hishida T, Iwasaki H, Ishioka K, Shinagawa H.





  
Title:
        Molecular analysis of the Pseudomonas aeruginosa genes, ruvA, ruvB and ruvC, involved in processing of homologous recombination intermediates.




  
PubMed:
        97136691


MedLine:
        




    
Source:
Gene. 1996 Dec 5;182(1-2):63-70.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3921
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6159
                           PA0966_tr
                           translation of PA0966
                           201
                           99.99
                           99.99
                           0
                           998.0
     

     
     
170970
                           gb|AAG04355.1|AE004530_8
                           (AE004530) Holliday junction DNA helicase RuvA [Pseudomonas aeruginosa PAO1]
                           201
                           99.50
                           99.99
                           0
                           995.0
     

     
     
170971
                           dbj|BAA11818.1|
                           (D83138) Holliday junction binding protein [Pseudomonas aeruginosa]
                           201
                           99.50
                           99.99
                           0
                           995.0
     

     
     
170972
                           gb|AAN66840.1|AE016312_11
                           (AE016778) Holliday junction DNA helicase RuvA [Pseudomonas putida KT2440]
                           205
                           80.48
                           90.24
                           4
                           826.0
     

     
     
170973
                           gb|AAO57437.1|
                           (AE016870) Holliday junction DNA helicase RuvA [Pseudomonas syringae pv. tomato str. DC3000]
                           202
                           80.19
                           89.60
                           1
                           810.0
     

     






      

          
GC ORFID: 46923How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0966Glimmer Score: 

          
Start: 354045Stop: 354650

          
Length: 606


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0966 translation of PA0966Homolog Bit Score 389.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4686 (ORF: BLASTX 320.0), t_PA0966 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCGGACGCTTGCGTGGCACCCTGGCGGAGAAACAGCCGCCGCACCTGATCCTCGATGTGAATGGCGTC 
GGCTATGAAGTGGAAGTGCCGATGACGACCCTCTATCGGTTGCCTTCGGTAGGCGAGCCGGTGACCTTGCAT 
ACCCATCTGGTTGTGCGTGAGGATGCGCACTTGCTCTATGGCTTCGCCGAAAAGCGCGAGCGAGAGCTGTTC 
CGTGAGCTGATCCGACTCAACGGCGTGGGTCCGAAACTGGCTCTGGCGCTGATGTCGGGCCTGGAAGTGGAC 
GAACTGGTGCGTTGCGTCCAGGCACAGGACACCTCAACCCTGGTGAAGATCCCCGGTGTTGGCAAGAAGACC 
GCCGAGCGCCTGCTGGTGGAGTTGAAGGACCGCTTCAAGGCTTGGGAAAACATGCCCACGATTGCACCGTTG 
GTGATGGAACCCCGTGCCAGCGCTACAGTCTCAAGCGCCGAGGCCGATGCAGTCAGCGCGCTGATCGCCCTC 
GGCTTCAAGCCACAGGAAGCCAGTCGTGCCGTCGCAGCCGTACCGGGAGAGGATTTGTCCAGCGAAGAAATG 
ATCCGCCAGGCCCTGAAGGGCATGGTCTAG