ViewGene
Gene ID:
ChromosomeID:
GC_ORFID:
Genome Location:
PA4180 PA4180 aldH aldH prpL prpL PA4186 PA4186 opdN opdN yaaU yaaU PA4184 PA4184 lysR lysR dapA dapA PA4172 PA4172 PA4178 PA4178 PA4185 PA4185 PA4181 PA4181 PA4182 PA4182 pfpI pfpI PA4183 PA4183 PA4173 PA4173 PA4177 PA4177 ppiC2 ppiC2 6593 6593 6594 6594 6595 6595 6596 6596 6597 6597
GeneID:615
TrivialName:PA14_09820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09820
AltLocusName:PA4180
Sequence Length: 1644
Protein Length:547
Start: 4109153
Stop: 4107510
Strand: -
Type:
ChromosomeID:1
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07567.1|AE004834_7 (AE004834) probable acetolactate synthase large subunit [Pseudomonas aeruginosa PAO1]
Identities = 546/547 (99%), Positives = 546/547 (99%)
Sequence:
ATGGCCAAGGCAGCCGATGTGGTTGTGCAATGCCTGGAAAACGAGGGCGTGCAGTACGTCTTCGGAATTCCC
GGCGAGGAGAATCTCGACCTGCTGGAGTCCCTGCGCAAGTCGCAGATCCGGCTGGTGCTCACCCGCCACGAA
CAATCGGCCGGCTTCATGGCCGCCACCTACGGGCGCCTCACCGGCAAGACCGGGGTCAGCCTGTCGACCCTC
GGCCCGGGCGCCACCAACCTGGTCACCGCCGGCGCCTACGCCTACCTGGGCGGCATGCCGATGCTGATGATC
ACCGGGCAGAAGCCGATCAAGAAGTCCAAGCAGGGCCGCTTCCAGATCCTCGACGTGGTCGGCATGATGCAG
CCGCTGACCAAGTACACCCACCAGTTGGCCTCCGCCGACAACATTCCCTCGCGGGTCCGCGAGGCGTTCCGC
CTGGCCGAGGAAGAGAAGCCCGGCGCGGTGCACCTGGAGCTGCCGGAGGACATCGCCGCCGAGCAGACCGAC
AGCCTGCCCATCCCGCCGAGCCTGAGCCGCCGGCCGCTGGCGGAATACAAGGCGATCTGCGCCGCGGTGGAG
AAGCTGCGCGCCGCGCGCAGCCCGATCCTGGTGATCGGCGCCGGGGCCAACCGCAAGATGACCGCCAAGGTC
CTCAAGCAACTGATCGACAAGACCGGCATTCCCTTCGTCACCACCCAGATGGGCAAGGGCGTGGTCGACGAG
CGTCACCCGCGCTTCCTCGGCAACGCCGCGCTGTCCGCCGGCGACTTCGTGCATCGCGCGGTGGAGGCGGCC
GACCTGATCGTCAACGTCGGCCACGACGTGATCGAGAAGCCGCCGTTCTTCATGGTTCGCGGCGGTACCGAG
GTGATCCACGTGAACTTCCGTTCCGCCGAGGTGGACCCGGTGTATTTCCCGCAGATCGAAGTGGTGGGCGAC
ATCGCCAACGCCATCTGGCAGATCGGCGAGGCGCTGGACGATACCGCGCACTGGGACTTCACCCGCCTGCTG
GCGATCCGCGAGGCCAACGAGGCGCAGGTCGCCGAAGGCGCCGACGACCCGCGCTTCCCGCTCTATCCGCAG
CGCCTGGTGGCCGACGTGCGCCGGGCGTTGCCGTCGCAGGGCATAGTCGCCCTGGACAACGGCATGTACAAG
ATCTGGTTCGCCCGCAACTACAAGGCGCACATGCCCAACACCGTGCTGCTGGACAACGCCCTCGCCACCATG
GGCGCCGGCCTGCCCTCGGCGATGGCCGCGCACCTGGTCTACCCGGACCGGCCGATCGTCGCGGTGTGCGGC
GATGGCGGCTTCATGATGAACAGCCAGGAACTGGAAACCGCGGTGCGGCTGAAGATGAACCTGACGGTGATC
ATCCTGCGCGACAACGGCTACGGGATGATCCGCTGGAAGCAATCGAACATGGGCTTCGCCGACTTCGGGCTG
GACTACGGCAACCCGGACTTCGTGCGCTATGCCGAGGCCTACGGCGCCCACGGCCACCGGGTCGACAGTGCC
GAGGGCTTCCTGCCGTTGCTGGAGCGCTGCCTGGGCACGCCCGGGGTGCATGTGATCGATTGCCCGGTGGAT
TACTCGGAGAACGACCGCATCCTCAACGTCGAGCTGCGCGAACGCGCCCTGGCGGTCTGA
Translation:
MAKAADVVVQCLENEGVQYVFGIPGEENLDLLESLRKSQIRLVLTRHEQSAGFMAATYGRLTGKTGVSLSTL
GPGATNLVTAGAYAYLGGMPMLMITGQKPIKKSKQGRFQILDVVGMMQPLTKYTHQLASADNIPSRVREAFR
LAEEEKPGAVHLELPEDIAAEQTDSLPIPPSLSRRPLAEYKAICAAVEKLRAARSPILVIGAGANRKMTAKV
LKQLIDKTGIPFVTTQMGKGVVDERHPRFLGNAALSAGDFVHRAVEAADLIVNVGHDVIEKPPFFMVRGGTE
VIHVNFRSAEVDPVYFPQIEVVGDIANAIWQIGEALDDTAHWDFTRLLAIREANEAQVAEGADDPRFPLYPQ
RLVADVRRALPSQGIVALDNGMYKIWFARNYKAHMPNTVLLDNALATMGAGLPSAMAAHLVYPDRPIVAVCG
DGGFMMNSQELETAVRLKMNLTVIILRDNGYGMIRWKQSNMGFADFGLDYGNPDFVRYAEAYGAHGHRVDSA
EGFLPLLERCLGTPGVHVIDCPVDYSENDRILNVELRERALAV*
AnnotationID:624GeneID:615
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 08:08:21
Gene Name:
Confidence Code:3
GeneProduct:putative acetolactate synthase large subunit
Cell Localization:()
Synonyms:PA4180
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0028,COG3962
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68969.1|AE016528_7 (AE016786) acetolactate synthase, catabolic, putative [Pseudomonas
           putida KT2440]
          Length = 547

 Score =  997 bits (2577), Expect = 0.0
 Identities = 485/547 (88%), Positives = 527/547 (96%)

>dbj|BAB53323.1| (AP003011) acetolactate synthase large subunit [Mesorhizobium loti]
          Length = 548

 Score =  604 bits (1558), Expect = e-172
 Identities = 306/544 (56%), Positives = 392/544 (72%), Gaps = 4/544 (0%)

>gb|AAM32036.1| (AE013477) Acetolactate synthase [Methanosarcina mazei Goe1]
          Length = 544

 Score =  495 bits (1274), Expect = e-139
 Identities = 256/542 (47%), Positives = 362/542 (66%), Gaps = 10/542 (1%)






 
Structural Features:
COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes 
[acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, 
phosphonopyruvate decarboxylase] 
[Amino acid transport and metabolism / Coenzyme metabolism]
CD-Length = 550 residues,  97.3% aligned
Score =  497 bits (1280), Expect = 2e-141
Identities = 212/540 (39%), Positives = 292/540 (54%), Gaps = 13/540 (2%)

COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]
CD-Length = 617 residues,  87.8% aligned
Score =  175 bits (444), Expect = 2e-44
Identities = 136/553 (24%), Positives = 230/553 (41%), Gaps = 55/553 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1233




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18375




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36910




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:615_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:615
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1045
                           PA4180_tr
                           translation of PA4180
                           547
                           99.81
                           99.81
                           0
                           2813.0
     

     
     
40696
                           gb|AAG07567.1|AE004834_7
                           (AE004834) probable acetolactate synthase large subunit [Pseudomonas aeruginosa PAO1]
                           547
                           99.81
                           99.81
                           0
                           2813.0
     

     
     
40697
                           gb|AAN66782.1|AE016307_1
                           (AE016778) acetolactate synthase, catabolic, putative [Pseudomonas putida KT2440]
                           547
                           88.66
                           96.34
                           0
                           2577.0
     

     
     
40698
                           gb|AAN68969.1|AE016528_7
                           (AE016786) acetolactate synthase, catabolic, putative [Pseudomonas putida KT2440]
                           547
                           88.66
                           96.34
                           0
                           2577.0
     

     
     
40699
                           dbj|BAC49288.1|
                           (AP005949) blr4023 [Bradyrhizobium japonicum USDA 110]
                           556
                           56.29
                           71.76
                           11
                           1586.0
     

     






      

          
GC ORFID: 43617How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4180Glimmer Score: 

          
Start: 4109153Stop: 4107510

          
Length: 1644


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4180 translation of PA4180Homolog Bit Score 1088.0

          
Other Homologs:  t_PA4180 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAGGCAGCCGATGTGGTTGTGCAATGCCTGGAAAACGAGGGCGTGCAGTACGTCTTCGGAATTCCC 
GGCGAGGAGAATCTCGACCTGCTGGAGTCCCTGCGCAAGTCGCAGATCCGGCTGGTGCTCACCCGCCACGAA 
CAATCGGCCGGCTTCATGGCCGCCACCTACGGGCGCCTCACCGGCAAGACCGGGGTCAGCCTGTCGACCCTC 
GGCCCGGGCGCCACCAACCTGGTCACCGCCGGCGCCTACGCCTACCTGGGCGGCATGCCGATGCTGATGATC 
ACCGGGCAGAAGCCGATCAAGAAGTCCAAGCAGGGCCGCTTCCAGATCCTCGACGTGGTCGGCATGATGCAG 
CCGCTGACCAAGTACACCCACCAGTTGGCCTCCGCCGACAACATTCCCTCGCGGGTCCGCGAGGCGTTCCGC 
CTGGCCGAGGAAGAGAAGCCCGGCGCGGTGCACCTGGAGCTGCCGGAGGACATCGCCGCCGAGCAGACCGAC 
AGCCTGCCCATCCCGCCGAGCCTGAGCCGCCGGCCGCTGGCGGAATACAAGGCGATCTGCGCCGCGGTGGAG 
AAGCTGCGCGCCGCGCGCAGCCCGATCCTGGTGATCGGCGCCGGGGCCAACCGCAAGATGACCGCCAAGGTC 
CTCAAGCAACTGATCGACAAGACCGGCATTCCCTTCGTCACCACCCAGATGGGCAAGGGCGTGGTCGACGAG 
CGTCACCCGCGCTTCCTCGGCAACGCCGCGCTGTCCGCCGGCGACTTCGTGCATCGCGCGGTGGAGGCGGCC 
GACCTGATCGTCAACGTCGGCCACGACGTGATCGAGAAGCCGCCGTTCTTCATGGTTCGCGGCGGTACCGAG 
GTGATCCACGTGAACTTCCGTTCCGCCGAGGTGGACCCGGTGTATTTCCCGCAGATCGAAGTGGTGGGCGAC 
ATCGCCAACGCCATCTGGCAGATCGGCGAGGCGCTGGACGATACCGCGCACTGGGACTTCACCCGCCTGCTG 
GCGATCCGCGAGGCCAACGAGGCGCAGGTCGCCGAAGGCGCCGACGACCCGCGCTTCCCGCTCTATCCGCAG 
CGCCTGGTGGCCGACGTGCGCCGGGCGTTGCCGTCGCAGGGCATAGTCGCCCTGGACAACGGCATGTACAAG 
ATCTGGTTCGCCCGCAACTACAAGGCGCACATGCCCAACACCGTGCTGCTGGACAACGCCCTCGCCACCATG 
GGCGCCGGCCTGCCCTCGGCGATGGCCGCGCACCTGGTCTACCCGGACCGGCCGATCGTCGCGGTGTGCGGC 
GATGGCGGCTTCATGATGAACAGCCAGGAACTGGAAACCGCGGTGCGGCTGAAGATGAACCTGACGGTGATC 
ATCCTGCGCGACAACGGCTACGGGATGATCCGCTGGAAGCAATCGAACATGGGCTTCGCCGACTTCGGGCTG 
GACTACGGCAACCCGGACTTCGTGCGCTATGCCGAGGCCTACGGCGCCCACGGCCACCGGGTCGACAGTGCC 
GAGGGCTTCCTGCCGTTGCTGGAGCGCTGCCTGGGCACGCCCGGGGTGCATGTGATCGATTGCCCGGTGGAT 
TACTCGGAGAACGACCGCATCCTCAACGTCGAGCTGCGCGAACGCGCCCTGGCGGTCTGA