ViewGene
Gene ID:
ChromosomeID:
GC_ORFID:
Genome Location:
PA1689 PA1689 PA1682 PA1682 aroC aroC pscU pscU PA1678 PA1678 PA1680 PA1680 alkA alkA speE speE PA1688 PA1688 PA1679 PA1679 pscT pscT PA1683 PA1683 PA1677 PA1677 PA1675 PA1675 PA1684 PA1684 folE2 folE2 masA masA PA1673 PA1673 PA1672 PA1672 PA1676 PA1676 pscS pscS 5494 5494 5762 5762 5763 5763 5764 5764
GeneID:3741
TrivialName:PA14_42740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42740
AltLocusName:PA1683
Sequence Length: 618
Protein Length:205
Start: 1152257
Stop: 1152874
Strand: +
Type:
ChromosomeID:1
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05072.1|AE004595_11 (AE004595) probable sugar aldolase [Pseudomonas aeruginosa PAO1]
Identities = 204/205 (99%), Positives = 205/205 (100%)
Sequence:
ATGAACGACAACCGTGAACAGCTGACCCAGCAGATCATCGACGCCGGCCGGTTCCTCTACGGCCGCGGCTGG
TCGCCGGCGACCAGCAGCAACTACTCCGCGCGCCTGGACGAACAGCGCGCGCTGCTCACCGTCTCGGGCAAG
CACAAGGGCCAGTTGGGCTTCGACGACGTGCTGGCCACCGACCTGGCCGGCAACAGCCTGGAACCGGGCAAG
AAACCCTCGGCGGAGACCCTCCTGCACACCCAGCTGTATGCCTGGAACCCGGCGATCGGCGCAGTGCTGCAT
ACCCACTCGGTGAATGCCACCGTGCTTTCCCGCCTGGTTCGCGGCGACCGCCTGGTGCTGCAGGACTACGAA
CTGCAGAAAGCCTTCGCCGGGGTCACCACCCACGAAGGCCAGGTCGAGGTGCCGATCTTCGACAACGACCAG
GACATCGCTCGCCTGGCCAGCCGTGTGCAGCCCTGGCTGGAGGCGCATCCGTACTGCCCGGGGTATTTGATC
CGCGGCCACGGGCTGTACACTTGGGGTGCGCGCATGAGCGATGCCCTGCGTCAGGTGGAAGCTTTCGAGTTT
CTGTTCGAGTGTGAACTGAAAGTACTGAGTCTGAGCCGATGA
Translation:
MNDNREQLTQQIIDAGRFLYGRGWSPATSSNYSARLDEQRALLTVSGKHKGQLGFDDVLATDLAGNSLEPGK
KPSAETLLHTQLYAWNPAIGAVLHTHSVNATVLSRLVRGDRLVLQDYELQKAFAGVTTHEGQVEVPIFDNDQ
DIARLASRVQPWLEAHPYCPGYLIRGHGLYTWGARMSDALRQVEAFEFLFECELKVLSLSR*
AnnotationID:3748GeneID:3741
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 19:07:29
Gene Name:
Confidence Code:3
GeneProduct:putative sugar aldolase
Cell Localization:()
Synonyms:PA1683
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0235,pfam00596,cd00398
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55563.1| (AE016863) class II aldolase/adducin domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 204

 Score =  338 bits (867), Expect = 1e-92
 Identities = 165/197 (83%), Positives = 175/197 (88%)

>gb|AAC07751.1| (AE000766) fuculose-1-phosphate aldolase [Aquifex aeolicus VF5]
          Length = 208

 Score =  201 bits (511), Expect = 2e-51
 Identities = 101/193 (52%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

>gb|AAM41109.1| (AE012284) sugar aldolase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 217

 Score =  192 bits (488), Expect = 1e-48
 Identities = 104/198 (52%), Positives = 132/198 (66%), Gaps = 2/198 (1%)






 
Structural Features:
COG0235, AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 
[Carbohydrate transport and metabolism]
CD-Length = 219 residues,  89.5% aligned
Score =  162 bits (412), Expect = 2e-41
Identities = 75/209 (35%), Positives = 103/209 (49%), Gaps = 17/209 (8%)

pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain.
CD-Length = 198 residues,  94.4% aligned
Score =  155 bits (393), Expect = 3e-39
Identities = 64/195 (32%), Positives = 86/195 (44%), Gaps = 9/195 (4%)

cd00398, Aldolase_II, Class II Aldolase and Adducin head (N-terminal) domain.
CD-Length = 209 residues,  90.4% aligned
Score = 96.1 bits (239), Expect = 3e-21
Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 11/199 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7485




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24627




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37193




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3741_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3741
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5954
                           PA1683_tr
                           translation of PA1683
                           205
                           99.51
                           99.99
                           0
                           1067.0
     

     
     
166368
                           gb|AAG05072.1|AE004595_11
                           (AE004595) probable sugar aldolase [Pseudomonas aeruginosa PAO1]
                           205
                           99.51
                           99.99
                           0
                           1067.0
     

     
     
166369
                           gb|AAO55563.1|
                           (AE016863) class II aldolase/adducin domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           206
                           80.09
                           85.92
                           3
                           863.0
     

     
     
166370
                           gb|AAC07751.1|
                           (AE000766) fuculose-1-phosphate aldolase [Aquifex aeolicus VF5]
                           209
                           49.28
                           66.02
                           5
                           506.0
     

     
     
166371
                           gb|AAM41109.1|
                           (AE012284) sugar aldolase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           218
                           48.62
                           61.46
                           14
                           483.0
     

     






      

          
GC ORFID: 46743How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1683Glimmer Score: 

          
Start: 1152257Stop: 1152874

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1683 translation of PA1683Homolog Bit Score 415.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene857 (ORF: BLASTX 337.0), t_PA1683 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACAACCGTGAACAGCTGACCCAGCAGATCATCGACGCCGGCCGGTTCCTCTACGGCCGCGGCTGG 
TCGCCGGCGACCAGCAGCAACTACTCCGCGCGCCTGGACGAACAGCGCGCGCTGCTCACCGTCTCGGGCAAG 
CACAAGGGCCAGTTGGGCTTCGACGACGTGCTGGCCACCGACCTGGCCGGCAACAGCCTGGAACCGGGCAAG 
AAACCCTCGGCGGAGACCCTCCTGCACACCCAGCTGTATGCCTGGAACCCGGCGATCGGCGCAGTGCTGCAT 
ACCCACTCGGTGAATGCCACCGTGCTTTCCCGCCTGGTTCGCGGCGACCGCCTGGTGCTGCAGGACTACGAA 
CTGCAGAAAGCCTTCGCCGGGGTCACCACCCACGAAGGCCAGGTCGAGGTGCCGATCTTCGACAACGACCAG 
GACATCGCTCGCCTGGCCAGCCGTGTGCAGCCCTGGCTGGAGGCGCATCCGTACTGCCCGGGGTATTTGATC 
CGCGGCCACGGGCTGTACACTTGGGGTGCGCGCATGAGCGATGCCCTGCGTCAGGTGGAAGCTTTCGAGTTT 
CTGTTCGAGTGTGAACTGAAAGTACTGAGTCTGAGCCGATGA