ViewGene
Gene ID:
ChromosomeID:
GC_ORFID:
Genome Location:
PA2984 PA2984 sth sth nqrA nqrA nqrF nqrF lolE lolE lolC lolC lpxK lpxK apbE apbE 2060 2060 nqrC nqrC kdsB kdsB PA2989 PA2989 ugpQ ugpQ lolD lolD nqrD nqrD PA2983 PA2983 nqrE nqrE PA2985 PA2985 exbD exbD PA2992 PA2992 PA2980 PA2980 6226 6226 6227 6227 6228 6228 6229 6229 6230 6230
GeneID:3165
TrivialName:PA14_25420
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 01:01:21
LocusName:PA14_25420
AltLocusName:PA2989
Sequence Length: 765
Protein Length:254
Start: 2731574
Stop: 2732338
Strand: +
Type:
ChromosomeID:1
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06377.1|AE004724_6 (AE004724) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 252/254 (99%), Positives = 252/254 (99%)
Sequence:
ATGGCTGCGACGTTTGGCCCGCGTATAGCGCGTGCCGATGAAAACGGACAGGGGTCTGAACATGTCGCCCTT
AGCTGGCAGAAAATGGATGCGTCGGGATGGCGAAGTGGCGAGGCATCGCCGGCGGCCTTACACTCTGACCAT
CACTGCCGCCGTGGGTTCGCCATGTCCACTCGTGACGCGGATGACCGCCGCGAATACTACCGTATCGAAGAT
ACCCTCGCACTGGAATTTCGCCCTGCCGGGGCCGTCGAAGACAGCCTGGAGAGCGAGCCGGGGGCCACCCTG
TTCAGCCTGCTCAGCGACCTCCACCTGATGGATTACGAGTCGCAGCACCTGCTGCGCCACATCAGCGAACGC
GACCGCACGCTGGCCAACTACCTGAAGGTGATGAACAAGCGCATCGACCTGCTTGGCCAGGTCATGGTGCAG
AGCCTGCTCAAGGAGATCGGCGAACCGCGCAAGGTCAGCCTGTCCGAGGGGGGCGTCAGCTTCCACCACGAC
CGCGCTTTGCCGGTCGGCCAGTTGCTCGTCCTGCGCATGGTCCTGTTGCCGCAGGGGTTCGGCCTCGAACTG
CGGGCCCGGGTAATCCACGCCCAGCCACACGACGACGAATTCGAGATCGGCACCGAGTTCGAAGCGTTGAGC
GACGCACAGCGCCAGTTGCTGGCCCGGCATATCCTCCAGAAGCAGGCCCAGCAGCGCCGCCTGGCACGGGCC
GGACAGGGCCCGCTCGGCGAGCCGGGCCAACCTTCTTCGACCTGA
Translation:
MAATFGPRIARADENGQGSEHVALSWQKMDASGWRSGEASPAALHSDHHCRRGFAMSTRDADDRREYYRIED
TLALEFRPAGAVEDSLESEPGATLFSLLSDLHLMDYESQHLLRHISERDRTLANYLKVMNKRIDLLGQVMVQ
SLLKEIGEPRKVSLSEGGVSFHHDRALPVGQLLVLRMVLLPQGFGLELRARVIHAQPHDDEFEIGTEFEALS
DAQRQLLARHILQKQAQQRRLARAGQGPLGEPGQPSST*
AnnotationID:3173GeneID:3165
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 13:01:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2989
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6333




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23475




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3165
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5092
                           PA2989_tr
                           translation of PA2989
                           254
                           99.21
                           99.21
                           0
                           1290.0
     

     
     
142842
                           gb|AAG06377.1|AE004724_6
                           (AE004724) hypothetical protein PA2989 [Pseudomonas aeruginosa PAO1]
                           254
                           99.21
                           99.21
                           0
                           1290.0
     

     
     
142843
                           gb|AAN67766.1|AE016408_4
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           259
                           38.99
                           52.50
                           70
                           473.0
     

     






      

          
GC ORFID: 46167How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2989Glimmer Score: 

          
Start: 2731574Stop: 2732338

          
Length: 765


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2989 translation of PA2989Homolog Bit Score 501.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene518 (ORF: BLASTX 187.0), t_PA2989 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGCGACGTTTGGCCCGCGTATAGCGCGTGCCGATGAAAACGGACAGGGGTCTGAACATGTCGCCCTT 
AGCTGGCAGAAAATGGATGCGTCGGGATGGCGAAGTGGCGAGGCATCGCCGGCGGCCTTACACTCTGACCAT 
CACTGCCGCCGTGGGTTCGCCATGTCCACTCGTGACGCGGATGACCGCCGCGAATACTACCGTATCGAAGAT 
ACCCTCGCACTGGAATTTCGCCCTGCCGGGGCCGTCGAAGACAGCCTGGAGAGCGAGCCGGGGGCCACCCTG 
TTCAGCCTGCTCAGCGACCTCCACCTGATGGATTACGAGTCGCAGCACCTGCTGCGCCACATCAGCGAACGC 
GACCGCACGCTGGCCAACTACCTGAAGGTGATGAACAAGCGCATCGACCTGCTTGGCCAGGTCATGGTGCAG 
AGCCTGCTCAAGGAGATCGGCGAACCGCGCAAGGTCAGCCTGTCCGAGGGGGGCGTCAGCTTCCACCACGAC 
CGCGCTTTGCCGGTCGGCCAGTTGCTCGTCCTGCGCATGGTCCTGTTGCCGCAGGGGTTCGGCCTCGAACTG 
CGGGCCCGGGTAATCCACGCCCAGCCACACGACGACGAATTCGAGATCGGCACCGAGTTCGAAGCGTTGAGC 
GACGCACAGCGCCAGTTGCTGGCCCGGCATATCCTCCAGAAGCAGGCCCAGCAGCGCCGCCTGGCACGGGCC 
GGACAGGGCCCGCTCGGCGAGCCGGGCCAACCTTCTTCGACCTGA