ViewGene
Gene ID:
ChromosomeID:
GC_ORFID:
Genome Location:
PA4112 PA4112 PA4117 PA4117 PA4115 PA4115 PA4108 PA4108 ampC ampC sotB sotB hpaA hpaA ampR ampR aph aph hpaG1 hpaG1 PA4116 PA4116 PA4118 PA4118 PA4114 PA4114 PA4111 PA4111 6572 6572 6573 6573 6574 6574 6575 6575
GeneID:1694
TrivialName:PA14_10750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10750
AltLocusName:PA4113
Sequence Length: 1191
Protein Length:396
Start: 4027504
Stop: 4026314
Strand: -
Type:
ChromosomeID:1
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07500.1|AE004828_1 (AE004828) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 395/396 (99%), Positives = 396/396 (100%)
Sequence:
ATGGACAGCACCTCCGAAACCCGCAGCGGCAGCTGGCTGAGCGTGATCGCCCTGGCCCTGGCCGCCTTCATC
TTCAACACCACGGAGTTCGTCCCGGTCGGCCTGCTCAGCGACATCGGCCACAGCTTCGAGATGCCCACCTCG
CAGGTCGGCCTGATGTTGACCATCTATGCCTGGGTGGTGTCGCTGGCCTCGTTGCCGATGATGCTGCTGACC
CGCAATATCGAGCGGCGCAAGCTGCTGGTCGGGGTATTCCTGCTGTTCATCGCCAGCCACGTGCTGTCCGGG
CTGGCCTGGAGCTTCCAGGTGCTGATGCTCAGCCGGATCGGCATTGCCTTCGCCCACGCGGTGTTCTGGGCC
ATCACCGCTTCGCTGGCGGTGCGCGTGGCGCCGCCGGGACAGCAGGCCAAGGCGCTAGGGCTGCTGGCCACC
GGCACCACCCTGGCGATGGTCCTGGGCATCCCGCTGGGGCGGGTGGTCGGCGAGGCCCTGGGCTGGCGTACC
ACCTTCATGGCCATCGCCGGACTCTCGGTGCTGACCTTGCTCTACCTGGCGCGCTCCCTGCCGCTGCTGCCA
AGCCAGAATTCCGGTTCCCTGCGCAGCCTGCCGATGCTGTTCCGACGCCCGGCGCTGGTTTGCCTGTACGTG
CTGACCGTGGTGGTGATCAGCGCCCAGTTCACCGCCTACAGCTACATCGAGCCCTTCGCCAAGCAGGTGGCG
CAGATGAGCGGCGAGGCGACCACCCTGCTGTTGCTGTTGTTCGGCGGCGCCGGGATCTTCGGTTCGATCCTC
TTCAGCCGCTACAGCGAGGCTTTCCCGCGAGGCTTCCTGCTGGCCGCGATCCTCGCCTTGGGCAGCAGCCTG
GCGCTGCTGTTGCCGCTGTCCGCGCAGCCGACCTGGCTGATGGCGCTCAGCCTGCTCTGGGGCATGTCGATC
ATGTGCTTCGGCCTGGCCCAGCAGTCCCGCGTCCTGCGCCTCGCCTCGGACGCCACCGACGTGGCCATGGCG
CTGTTCTCCGGCCTGTACAACGTCGGCATCGGCGCCGGCGCGCTGCTCGGCAGCGTGGTCAGCGAACGCATG
GGCCTGGCCTCGATCGGCAACGTCGGCGCCGCGCTGGCGCTGGCCGGCCTGCTGCTCGCCCTGTTCGCCGCA
CTGCGCTACGCGGAGGCGCTGAAAACCACGTCGTTGTGA
Translation:
MDSTSETRSGSWLSVIALALAAFIFNTTEFVPVGLLSDIGHSFEMPTSQVGLMLTIYAWVVSLASLPMMLLT
RNIERRKLLVGVFLLFIASHVLSGLAWSFQVLMLSRIGIAFAHAVFWAITASLAVRVAPPGQQAKALGLLAT
GTTLAMVLGIPLGRVVGEALGWRTTFMAIAGLSVLTLLYLARSLPLLPSQNSGSLRSLPMLFRRPALVCLYV
LTVVVISAQFTAYSYIEPFAKQVAQMSGEATTLLLLLFGGAGIFGSILFSRYSEAFPRGFLLAAILALGSSL
ALLLPLSAQPTWLMALSLLWGMSIMCFGLAQQSRVLRLASDATDVAMALFSGLYNVGIGAGALLGSVVSERM
GLASIGNVGAALALAGLLLALFAALRYAEALKTTSL*
AnnotationID:1703GeneID:1694
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 11:11:03
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:sotB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative sugar efflux transpoter
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68040.1|AE016436_8 (AE016783) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 408

 Score =  543 bits (1399), Expect = e-154
 Identities = 280/385 (72%), Positives = 331/385 (85%)

>gb|AAO54533.1| (AE016859) major facilitator family transporter [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 407

 Score =  518 bits (1335), Expect = e-146
 Identities = 259/381 (67%), Positives = 318/381 (83%)

>gb|AAN80407.1|AE016760_266 (AE016760) Sugar efflux transporter [Escherichia coli CFT073]
          Length = 396

 Score =  451 bits (1159), Expect = e-126
 Identities = 229/392 (58%), Positives = 298/392 (76%)






 
Structural Features:
COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
CD-Length = 394 residues, 100.0% aligned
Score =  251 bits (642), Expect = 1e-67
Identities = 172/394 (43%), Positives = 238/394 (60%), Gaps = 2/394 (0%)






   
Genomic Context:
other possible gene names: ydeA, pnuP






   
Comment:


















    ReferenceID:3391




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20538




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36843




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1694_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1694
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2981
                           PA4113_tr
                           translation of PA4113
                           396
                           99.74
                           99.99
                           0
                           1925.0
     

     
     
92969
                           gb|AAG07500.1|AE004828_1
                           (AE004828) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           396
                           99.74
                           99.99
                           0
                           1925.0
     

     
     
92970
                           gb|AAN68040.1|AE016436_8
                           (AE016783) major facilitator family transporter [Pseudomonas putida KT2440]
                           413
                           68.03
                           80.62
                           22
                           1391.0
     

     
     
92971
                           gb|AAO54533.1|
                           (AE016859) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           408
                           63.97
                           78.92
                           13
                           1332.0
     

     
     
92972
                           emb|CAB53453.1|
                           (AJ249181) sugar efflux transpoter [Erwinia chrysanthemi]
                           399
                           60.40
                           78.44
                           7
                           1215.0
     

     






      

          
GC ORFID: 44696How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4113Glimmer Score: 

          
Start: 4027504Stop: 4026314

          
Length: 1191


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4113 translation of PA4113Homolog Bit Score 746.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4242 (ORF: BLASTX 514.0), t_PA4113 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAGCACCTCCGAAACCCGCAGCGGCAGCTGGCTGAGCGTGATCGCCCTGGCCCTGGCCGCCTTCATC 
TTCAACACCACGGAGTTCGTCCCGGTCGGCCTGCTCAGCGACATCGGCCACAGCTTCGAGATGCCCACCTCG 
CAGGTCGGCCTGATGTTGACCATCTATGCCTGGGTGGTGTCGCTGGCCTCGTTGCCGATGATGCTGCTGACC 
CGCAATATCGAGCGGCGCAAGCTGCTGGTCGGGGTATTCCTGCTGTTCATCGCCAGCCACGTGCTGTCCGGG 
CTGGCCTGGAGCTTCCAGGTGCTGATGCTCAGCCGGATCGGCATTGCCTTCGCCCACGCGGTGTTCTGGGCC 
ATCACCGCTTCGCTGGCGGTGCGCGTGGCGCCGCCGGGACAGCAGGCCAAGGCGCTAGGGCTGCTGGCCACC 
GGCACCACCCTGGCGATGGTCCTGGGCATCCCGCTGGGGCGGGTGGTCGGCGAGGCCCTGGGCTGGCGTACC 
ACCTTCATGGCCATCGCCGGACTCTCGGTGCTGACCTTGCTCTACCTGGCGCGCTCCCTGCCGCTGCTGCCA 
AGCCAGAATTCCGGTTCCCTGCGCAGCCTGCCGATGCTGTTCCGACGCCCGGCGCTGGTTTGCCTGTACGTG 
CTGACCGTGGTGGTGATCAGCGCCCAGTTCACCGCCTACAGCTACATCGAGCCCTTCGCCAAGCAGGTGGCG 
CAGATGAGCGGCGAGGCGACCACCCTGCTGTTGCTGTTGTTCGGCGGCGCCGGGATCTTCGGTTCGATCCTC 
TTCAGCCGCTACAGCGAGGCTTTCCCGCGAGGCTTCCTGCTGGCCGCGATCCTCGCCTTGGGCAGCAGCCTG 
GCGCTGCTGTTGCCGCTGTCCGCGCAGCCGACCTGGCTGATGGCGCTCAGCCTGCTCTGGGGCATGTCGATC 
ATGTGCTTCGGCCTGGCCCAGCAGTCCCGCGTCCTGCGCCTCGCCTCGGACGCCACCGACGTGGCCATGGCG 
CTGTTCTCCGGCCTGTACAACGTCGGCATCGGCGCCGGCGCGCTGCTCGGCAGCGTGGTCAGCGAACGCATG 
GGCCTGGCCTCGATCGGCAACGTCGGCGCCGCGCTGGCGCTGGCCGGCCTGCTGCTCGCCCTGTTCGCCGCA 
CTGCGCTACGCGGAGGCGCTGAAAACCACGTCGTTGTGA