ViewGene
Locus Name:
GeneID:
Location:

GeneID:954
TrivialName: PA14_71930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71930
PAO1 Ortholog Locus:PA5449
Sequence Length:1383
Protein Length:460
Start: 6412527
Stop: 6411145
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08834.1|AE004958_4 (AE004958) glycosyltransferase WbpX [Pseudomonas aeruginosa PAO1]
Identities = 457/460 (99%), Positives = 457/460 (99%)
Sequence:
ATGACGCGTCTGTTGGTCGAATGCACCTATGTGTTCGAGCATCCCAAGGTCAATTCCCGTATTCAGCGGGTG
GTGCGCAACGTCATCCGCGAGTTGCCGGAAGCCGACGAGACGGTGGAGTGCATCCCGGTGGCAATGCTCGAC
GGCACCCTGTATCAGGTCCACAGCCTGGCGCCGCTGGACCCACGGCCGCATTCGCCGCTGGTACGCCTGCGC
ATCCTGGTGGAGCGAGCCGCCAACTACTTCTGGCTGGGCCAGCGCACCCTGGAAAAGCGCCGCCCGTTCCGT
TCCTCGCCGTGGGCCCGGCGCCTTCTCTATGTAGCCTGCCGCCTGTTCGCCTTCGCCTTCCTCAGCATTCCG
CTGCGCCTGCTCGACCGCATCCTCGGCAAGCAGCAGCCTGCACCCGTGCGCGCGACCCCGCTCGAACATCGG
GCCGGCGACCAACTGGTCTTGCTGGACTCCTCCTGGCACGCCGATTTCTTCCCGCTGGCGGAACGCCTCAAG
AGCGAGGGCGTGGGCATCGTCTCGGTGATCTACGACCTGATTCCCCTGACCCATCCGCAATTCTGCGATGCC
GGCCTGGTCAAGGTATTCAACCACTGGTTCGACTGGATCGCGGCCACCGCCGACGGCTACGTCGCGATTTCC
GAGACCATCCGCGACGAAGTGCGCGCGGAGATGCTGCGGCGTATCGGCCCGGAGAAGGTCGCGCAACGCTGG
TTCGATTATTTCCACCTGGGTTCGGAGCTGGACCTGGTAGAGGACGGCGCCTCCGTCGAGCCCGATCTGCTG
CGCATGTTCAAGGCCAAGGCGCCGGTATTCCTGATGGTCAGCACCATCGAGCCGCGGAAGAACCACGGTTAC
CTGCTGGATGCCTTCGAGCGCGCCTGGGCCCAGGGTTCGCAGGTGCGGTTGTGCATCGCCGGACGCATCGGC
TGGAAGTGCGAGGCGCTGGTGGAACGGGTGCGGCAGCATCCGGAGCTGAACAAGCGCCTGTTCATGTTCAAC
GACCTCTCCGACAAGAGCCTGGAGTACGCATACTCCCATGCCGCATCGCTGGTCTTCCCGTCCTATGTGGAA
GGTTTCGGCCTGCCGCTGGTGGAGGCCATGCAGCGCGGCCTGCCGGCGATGGGCAGCGACATCCCGGTGTTC
CGCGAGATCGGCGGCGAATTCATGGCCTACTTCGACCTCGCCGATCCGCAGACCCTGGCGAACCTGGTCACC
CGCTTCGAAGCCACGGGCGAGTTCCCGGCCGAGCGACCGGTCGGCGAATGGCGCTGGATCGGCTGGCACGAA
GCGAGTCGGCAACTGATCGCGCGGATCCTGCTCGCCCTCGGCAAGGCCCCGACGCATGGCGAGGCAGTACAT
GCGGATTGCGGTTAA
Translation:
MTRLLVECTYVFEHPKVNSRIQRVVRNVIRELPEADETVECIPVAMLDGTLYQVHSLAPLDPRPHSPLVRLR
ILVERAANYFWLGQRTLEKRRPFRSSPWARRLLYVACRLFAFAFLSIPLRLLDRILGKQQPAPVRATPLEHR
AGDQLVLLDSSWHADFFPLAERLKSEGVGIVSVIYDLIPLTHPQFCDAGLVKVFNHWFDWIAATADGYVAIS
ETIRDEVRAEMLRRIGPEKVAQRWFDYFHLGSELDLVEDGASVEPDLLRMFKAKAPVFLMVSTIEPRKNHGY
LLDAFERAWAQGSQVRLCIAGRIGWKCEALVERVRQHPELNKRLFMFNDLSDKSLEYAYSHAASLVFPSYVE
GFGLPLVEAMQRGLPAMGSDIPVFREIGGEFMAYFDLADPQTLANLVTRFEATGEFPAERPVGEWRWIGWHE
ASRQLIARILLALGKAPTHGEAVHADCG*
AnnotationID:963GeneID:954
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 20:08:30
Gene Name:wbpX
Confidence Code:1
GeneProduct:glycosyltransferase WbpX
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00534
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00534, Glycosyl transferases group 1
CD-Length = 172 residues,  89.5% aligned
Score = 84.2 bits (208), Expect = 3e-17
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 5/156 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1911




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19053




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34663




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:954_cdd.html


    		




 
URL:

















    ReferenceID:35625




  
Author/Investigator(s):
        Rocchetta HL, Burrows LL, Pacan JC, Lam JS.





  
Title:
        Three rhamnosyltransferases responsible for assembly of the A-band D-rhamnan polysaccharide in Pseudomonas aeruginosa: a fourth transferase, WbpL, is required for the initiation of both A-band and B-band lipopolysaccharide synthesis.




  
PubMed:
        9680202


MedLine:
        




    
Source:
Mol Microbiol. 1998 Jun;28(6):1103-19.

Erratum in:
    * Mol Microbiol 1998 Dec;30(5):1131.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9680202









           
Homologs By Global Alignment 

           

       



     
Gene ID:954
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1692
                           PA5449_tr
                           translation of PA5449
                           460
                           99.34
                           99.34
                           0
                           2406.0
     

     
     
60314
                           gb|AAG08834.1|AE004958_4
                           (AE004958) glycosyltransferase WbpX [Pseudomonas aeruginosa PAO1]
                           460
                           99.34
                           99.34
                           0
                           2406.0
     

     
     
60315
                           gb|AAC38770.1|
                           (AF010181) glycosyltransferase WbpX [Pseudomonas aeruginosa]
                           460
                           99.34
                           99.34
                           0
                           2406.0
     

     






      

          
GC ORFID: 43956How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5449Glimmer Score: 

          
Start: 5676216Stop: 5674834

          
Length: 1383


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5449 translation of PA5449Homolog Bit Score 931.0

          
Other Homologs:  t_PA5449 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCGTCTGTTGGTCGAATGCACCTATGTGTTCGAGCATCCCAAGGTCAATTCCCGTATTCAGCGGGTG 
GTGCGCAACGTCATCCGCGAGTTGCCGGAAGCCGACGAGACGGTGGAGTGCATCCCGGTGGCAATGCTCGAC 
GGCACCCTGTATCAGGTCCACAGCCTGGCGCCGCTGGACCCACGGCCGCATTCGCCGCTGGTACGCCTGCGC 
ATCCTGGTGGAGCGAGCCGCCAACTACTTCTGGCTGGGCCAGCGCACCCTGGAAAAGCGCCGCCCGTTCCGT 
TCCTCGCCGTGGGCCCGGCGCCTTCTCTATGTAGCCTGCCGCCTGTTCGCCTTCGCCTTCCTCAGCATTCCG 
CTGCGCCTGCTCGACCGCATCCTCGGCAAGCAGCAGCCTGCACCCGTGCGCGCGACCCCGCTCGAACATCGG 
GCCGGCGACCAACTGGTCTTGCTGGACTCCTCCTGGCACGCCGATTTCTTCCCGCTGGCGGAACGCCTCAAG 
AGCGAGGGCGTGGGCATCGTCTCGGTGATCTACGACCTGATTCCCCTGACCCATCCGCAATTCTGCGATGCC 
GGCCTGGTCAAGGTATTCAACCACTGGTTCGACTGGATCGCGGCCACCGCCGACGGCTACGTCGCGATTTCC 
GAGACCATCCGCGACGAAGTGCGCGCGGAGATGCTGCGGCGTATCGGCCCGGAGAAGGTCGCGCAACGCTGG 
TTCGATTATTTCCACCTGGGTTCGGAGCTGGACCTGGTAGAGGACGGCGCCTCCGTCGAGCCCGATCTGCTG 
CGCATGTTCAAGGCCAAGGCGCCGGTATTCCTGATGGTCAGCACCATCGAGCCGCGGAAGAACCACGGTTAC 
CTGCTGGATGCCTTCGAGCGCGCCTGGGCCCAGGGTTCGCAGGTGCGGTTGTGCATCGCCGGACGCATCGGC 
TGGAAGTGCGAGGCGCTGGTGGAACGGGTGCGGCAGCATCCGGAGCTGAACAAGCGCCTGTTCATGTTCAAC 
GACCTCTCCGACAAGAGCCTGGAGTACGCATACTCCCATGCCGCATCGCTGGTCTTCCCGTCCTATGTGGAA 
GGTTTCGGCCTGCCGCTGGTGGAGGCCATGCAGCGCGGCCTGCCGGCGATGGGCAGCGACATCCCGGTGTTC 
CGCGAGATCGGCGGCGAATTCATGGCCTACTTCGACCTCGCCGATCCGCAGACCCTGGCGAACCTGGTCACC 
CGCTTCGAAGCCACGGGCGAGTTCCCGGCCGAGCGACCGGTCGGCGAATGGCGCTGGATCGGCTGGCACGAA 
GCGAGTCGGCAACTGATCGCGCGGATCCTGCTCGCCCTCGGCAAGGCCCCGACGCATGGCGAGGCAGTACAT 
GCGGATTGCGGTTAA