ViewGene
Locus Name:
GeneID:
Location:

GeneID:934
TrivialName: PA14_16090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16090
PAO1 Ortholog Locus:PA3735
Sequence Length:1410
Protein Length:469
Start: 1369814
Stop: 1371223
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07122.1|AE004792_7 (AE004792) threonine synthase [Pseudomonas aeruginosa PAO1]
Identities = 468/469 (99%), Positives = 468/469 (99%)
Sequence:
ATGCGTTACATCAGCACCCGCGGCCAAGCGCCCGCCCTGAACTTCGAAGATGTCCTCCTCGCCGGCCTGGCC
AGCGACGGCGGCCTCTACGTCCCGGAAAACCTGCCACGCTTCACCCTCGAGGAGATCGCCTCCTGGGTCGGC
CTGCCCTACCACGAGCTGGCCTTCCGGGTGATGCGCCCGTTCGTCGCCGGCAGCATCGCCGATGCCGACTTC
AAGAAGATCCTCGAGGAAACCTATGGCGTCTTCGCCCATGACGCAGTGGCGCCGCTGCGCCAGTTGAACGGC
AACGAATGGGTGCTGGAGCTGTTCCACGGCCCGACCCTGGCCTTCAAGGACTTCGCCCTGCAACTGCTCGGC
CGCCTGCTCGACCATGTGCTGGCCAAGCGCGGCGAGCGCGTGGTGATCATGGGGGCCACCTCCGGCGATACC
GGCTCCGCGGCCATCGAAGGCTGCCGCCGTTGCGACAACGTCGACATCTTCATCATGCACCCGCACAACCGC
GTGTCCGAGGTGCAGCGCCGGCAGATGACCACCATCCTCGGCGACAACATCCACAACATCGCCATCGAAGGC
AACTTCGATGACTGCCAGGAGATGGTCAAGGCCAGCTTCGCCGACCAGGGCTTCCTCAAGGGTACCCGCCTG
GTAGCGGTGAACTCGATCAACTGGGCGCGGATCATGGCCCAGATCGTCTACTACTTCCATGCCGCGCTGCAG
CTCGGCGCGCCGCATCGCTCGGTGGCGTTCTCGGTGCCGACCGGCAACTTCGGCGACATCTTCGCCGGCTAC
CTGGCGCGCAACATGGGCCTGCCGGTCAGCCAGCTGATCGTCGCGACCAACCGCAACGACATCCTGCACCGC
TTCATGAGCGGCAACCGCTACGACAAGGACACCCTGCATCCCTCGCTGTCGCCGTCGATGGATATCATGGTC
TCGTCCAACTTCGAACGCCTGCTGTTCGACCTGCACGGCCGCAACGGCAAGGCCGTCGCCGAACTGCTGGAT
GCCTTCAAGGCCAGCGGCAAGCTGTCGGTGGAAGACCAGCGCTGGACCGAGGCGCGCAAGCTGTTCGACTCC
CTGGCGGTCAGCgACGAGCAGaccTGCGAgACCATCGCCGAGGTATACCGCTCCTGTGGCGAGTTGCTCGAC
CCGCACACCGCCATTGGCGTGCGTGCCGCACGCGAATGCCGGCGCAGCCTGAGCGTGCCGATGGTGACCCTG
GGCACTGCGCATCCGGTCAAGTTCCCCGAAGCGGTGGAGAAGGCCGGCATCGGCCAGGCGCCGGCGCTGCCT
GCGCACCTCGCCGACCTGTTCGAGCGCGAGGAGCGCTGCACCGTATTGCCGAACGAGCTGGCCAAGGTACAG
GCTTTCGTCAGCCAGCACGGCAATCGCGGCAAGCCGCTCTGA
Translation:
MRYISTRGQAPALNFEDVLLAGLASDGGLYVPENLPRFTLEEIASWVGLPYHELAFRVMRPFVAGSIADADF
KKILEETYGVFAHDAVAPLRQLNGNEWVLELFHGPTLAFKDFALQLLGRLLDHVLAKRGERVVIMGATSGDT
GSAAIEGCRRCDNVDIFIMHPHNRVSEVQRRQMTTILGDNIHNIAIEGNFDDCQEMVKASFADQGFLKGTRL
VAVNSINWARIMAQIVYYFHAALQLGAPHRSVAFSVPTGNFGDIFAGYLARNMGLPVSQLIVATNRNDILHR
FMSGNRYDKDTLHPSLSPSMDIMVSSNFERLLFDLHGRNGKAVAELLDAFKASGKLSVEDQRWTEARKLFDS
LAVSDEQTCETIAEVYRSCGELLDPHTAIGVRAARECRRSLSVPMVTLGTAHPVKFPEAVEKAGIGQAPALP
AHLADLFEREERCTVLPNELAKVQAFVSQHGNRGKPL*
AnnotationID:943GeneID:934
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 08:08:31
Gene Name:thrC
Confidence Code:1
GeneProduct:Threonine synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0498,KOG2616
Secondary Functional Category(ies):
EC Number:4.2.99.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67093.1|AE016338_3 (AE016779) threonine synthase [Pseudomonas putida KT2440]
          Length = 469

 Score =  840 bits (2171), Expect = 0.0
 Identities = 419/469 (89%), Positives = 434/469 (92%)

>gb|AAO55002.1| (AE016861) threonine synthase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 469

 Score =  832 bits (2149), Expect = 0.0
 Identities = 407/469 (86%), Positives = 438/469 (93%)







 
Structural Features:
COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism]
CD-Length = 411 residues, 100.0% aligned
Score =  379 bits (974), Expect = 9e-106
Identities = 153/468 (32%), Positives = 215/468 (45%), Gaps = 63/468 (13%)

KOG2616, Pyridoxalphosphate-dependent enzyme /
predicted threonine synthase
[Amino acid transport and metabolism]
CD-Length = 266 residues,  91.0% aligned
Score =  176 bits (447), Expect = 1e-44
Identities = 98/298 (32%), Positives = 140/298 (46%), Gaps = 66/298 (22%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1871




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19013




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31823




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:934_cdd.html


    		




 
URL:

















    ReferenceID:34255




  
Author/Investigator(s):
        Clepet C, Borne F, Krishnapillai V, Baird C, Patte JC, Cami B.





  
Title:
        Isolation, organization and expression of the Pseudomonas aeruginosa threonine genes.




  
PubMed:
        1333566


MedLine:
        




    
Source:
Mol Microbiol. 1992 Nov;6(21):3109-19.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1333566









           
Homologs By Global Alignment 

           

       



     
Gene ID:934
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1653
                           PA3735_tr
                           translation of PA3735
                           469
                           99.78
                           99.78
                           0
                           2418.0
     

     
     
59014
                           gb|AAG07122.1|AE004792_7
                           (AE004792) threonine synthase [Pseudomonas aeruginosa PAO1]
                           469
                           99.78
                           99.78
                           0
                           2418.0
     

     
     
59015
                           emb|CAA46168.1|
                           (X65033) threonine synthase [Pseudomonas aeruginosa]
                           492
                           89.63
                           91.05
                           26
                           2221.0
     

     
     
59016
                           gb|AAN67093.1|AE016338_3
                           (AE016779) threonine synthase [Pseudomonas putida KT2440]
                           469
                           89.33
                           92.53
                           0
                           2171.0
     

     
     
59017
                           gb|AAO55002.1|
                           (AE016861) threonine synthase [Pseudomonas syringae pv. tomato str. DC3000]
                           469
                           86.78
                           93.39
                           0
                           2149.0
     

     






      

          
GC ORFID: 43936How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3735Glimmer Score: 

          
Start: 3584123Stop: 3582714

          
Length: 1410


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3735 translation of PA3735Homolog Bit Score 936.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4569 (ORF: BLASTX 835.0), t_PA3735 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTTACATCAGCACCCGCGGCCAAGCGCCCGCCCTGAACTTCGAAGATGTCCTCCTCGCCGGCCTGGCC 
AGCGACGGCGGCCTCTACGTCCCGGAAAACCTGCCACGCTTCACCCTCGAGGAGATCGCCTCCTGGGTCGGC 
CTGCCCTACCACGAGCTGGCCTTCCGGGTGATGCGCCCGTTCGTCGCCGGCAGCATCGCCGATGCCGACTTC 
AAGAAGATCCTCGAGGAAACCTATGGCGTCTTCGCCCATGACGCAGTGGCGCCGCTGCGCCAGTTGAACGGC 
AACGAATGGGTGCTGGAGCTGTTCCACGGCCCGACCCTGGCCTTCAAGGACTTCGCCCTGCAACTGCTCGGC 
CGCCTGCTCGACCATGTGCTGGCCAAGCGCGGCGAGCGCGTGGTGATCATGGGGGCCACCTCCGGCGATACC 
GGCTCCGCGGCCATCGAAGGCTGCCGCCGTTGCGACAACGTCGACATCTTCATCATGCACCCGCACAACCGC 
GTGTCCGAGGTGCAGCGCCGGCAGATGACCACCATCCTCGGCGACAACATCCACAACATCGCCATCGAAGGC 
AACTTCGATGACTGCCAGGAGATGGTCAAGGCCAGCTTCGCCGACCAGGGCTTCCTCAAGGGTACCCGCCTG 
GTAGCGGTGAACTCGATCAACTGGGCGCGGATCATGGCCCAGATCGTCTACTACTTCCATGCCGCGCTGCAG 
CTCGGCGCGCCGCATCGCTCGGTGGCGTTCTCGGTGCCGACCGGCAACTTCGGCGACATCTTCGCCGGCTAC 
CTGGCGCGCAACATGGGCCTGCCGGTCAGCCAGCTGATCGTCGCGACCAACCGCAACGACATCCTGCACCGC 
TTCATGAGCGGCAACCGCTACGACAAGGACACCCTGCATCCCTCGCTGTCGCCGTCGATGGATATCATGGTC 
TCGTCCAACTTCGAACGCCTGCTGTTCGACCTGCACGGCCGCAACGGCAAGGCCGTCGCCGAACTGCTGGAT 
GCCTTCAAGGCCAGCGGCAAGCTGTCGGTGGAAGACCAGCGCTGGACCGAGGCGCGCAAGCTGTTCGACTCC 
CTGGCGGTCAGCgACGAGCAGaccTGCGAgACCATCGCCGAGGTATACCGCTCCTGTGGCGAGTTGCTCGAC 
CCGCACACCGCCATTGGCGTGCGTGCCGCACGCGAATGCCGGCGCAGCCTGAGCGTGCCGATGGTGACCCTG 
GGCACTGCGCATCCGGTCAAGTTCCCCGAAGCGGTGGAGAAGGCCGGCATCGGCCAGGCGCCGGCGCTGCCT 
GCGCACCTCGCCGACCTGTTCGAGCGCGAGGAGCGCTGCACCGTATTGCCGAACGAGCTGGCCAAGGTACAG 
GCTTTCGTCAGCCAGCACGGCAATCGCGGCAAGCCGCTCTGA