ViewGene
Locus Name:
GeneID:
Location:

GeneID:917
TrivialName: PA14_35630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35630
PAO1 Ortholog Locus:PA2240
Sequence Length:1437
Protein Length:478
Start: 3167740
Stop: 3166304
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05628.1|AE004649_19 (AE004649) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 478/478 (100%), Positives = 478/478 (100%)
Sequence:
ATGTCGTTGGGAAACCTCGTCGCTGTCGTCTTCGGCCTGGCCTTCGGCGGAGCGCTGCTGATGCTCAGCCCG
GCCAAGGCCGGCGCCGCCATGGTCGGCCTGGCGGCCGCGGTCACCATCCTGCGCTTCCCGTTCTGGGGGCTG
CTGCTGTTCGCCCTGGTGGCGACCTTCATGCCCTACTCCACGGTCAACGTGGGGATCCGTTCGACGGTCAGC
GAAGCGATTCTCGCCCTGACCTGGGGCGCGGTGCTCTGGCACATCTTCCTCTCGCGCCTGCCGCCGGCGCCG
GCGCTGCGCTACCGCTCCACCGAGCGCATGCTGCTGTGGCTGATGCTGTTCACCGTGCTGCCGTTCGTGGTC
GGCCAGGTCAGCATCAAGGCCGAGGCCAGCGGCCTGTCGAACTGGCTGCGCTGGTTGCTCAACCTGTCCATC
GTGTTCCTCGCCGGACGCCTGCTGGTGGAACGCAAGAACCGCGAGACACTGGTCATCGCCCTGCTGCTGGGC
ACCCTGGCGATGCTGCTGATGTCCATCGCGGTGTTCATCCGCTACCGCTCGGCGTCGGGGATGGCGCCGATC
CTGGCGATGTTCAACTACGCCAACCTGGACACCCTCAAGTTCGGCCTGGAGGCGCTTTCCTCGCGAATGGGC
TCGCCATGGATGCACCCCAACGCCACCGGCGGGATCATGGCCCTGCTGCTGCCCCTGGCGTTCTGCTACGGG
GTCGCCAACCAGGGCTGGCGGCGCGGCCTGGGCCTCGCCGTGGCGGTccTCGGCGCCGCCGCGATCCTCCTC
GCCAGTTCCCGCGGGGCGATGCTCAGCCTGGCGGTGGTGCTGTTCTGGATGTCCcTGCGCAAGGTGCCCTAC
ACCGGCCGCCTGCTGTTGCTCGGGGTCGGCCTGGTGGTGGTCCTGGTGCTCAGCTACCCGCCGTTGCAGGAA
CGCCTGGCGACCATCTTCTCGCCGCAGAACGCCAGTACCGAGGTGCGCTTCGACGAATACCGGATGTTCCCC
AAGGCCGTCGCCCGCTATCCGCTGGGAATCGGCTTCAAGGTCGACCCGCCGGTGCCGGGCACCGACCTCCTG
GGCATCTCCAACCTGTGGCTGAACTTCATGTACAAGGTCGGCCTCGGCGGCATGCTGCTGTTCATCGCGGTG
ACCTGGCGCTGGTGGCGCGAAGCCCGTCCGGAGAAAGGCCCGATCCGCCTGACCCGCGACAACGCGATCTGG
CTGGGCAGCACCGGCGGCATCCTGGCGGCGCTGGTCAGCGGCCTGTTCGACCACTACTTCAGCTTCGCCGTG
GTGATGATCGGCCTGTTCTGGCTGCTGGTCGGGATCAACCTGCTGGAAGCCCGCCGGCTGTTCCCGGAACGC
CAGCCGCAACCGCGGGCGGTGGGTTATCGCAAGCTCAAGCGACAGCTCGAGCGCGGGGCCGAGGCCTGA
Translation:
MSLGNLVAVVFGLAFGGALLMLSPAKAGAAMVGLAAAVTILRFPFWGLLLFALVATFMPYSTVNVGIRSTVS
EAILALTWGAVLWHIFLSRLPPAPALRYRSTERMLLWLMLFTVLPFVVGQVSIKAEASGLSNWLRWLLNLSI
VFLAGRLLVERKNRETLVIALLLGTLAMLLMSIAVFIRYRSASGMAPILAMFNYANLDTLKFGLEALSSRMG
SPWMHPNATGGIMALLLPLAFCYGVANQGWRRGLGLAVAVLGAAAILLASSRGAMLSLAVVLFWMSLRKVPY
TGRLLLLGVGLVVVLVLSYPPLQERLATIFSPQNASTEVRFDEYRMFPKAVARYPLGIGFKVDPPVPGTDLL
GISNLWLNFMYKVGLGGMLLFIAVTWRWWREARPEKGPIRLTRDNAIWLGSTGGILAALVSGLFDHYFSFAV
VMIGLFWLLVGINLLEARRLFPERQPQPRAVGYRKLKRQLERGAEA*
AnnotationID:926GeneID:917
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 15:03:11
Gene Name:pslJ
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2240
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68345866|gb|AAY93472.1|  membrane protein, putative [Pseudomonas fluorescens Pf-5]
     Length=472
     Score =  537 bits (1383),  Expect = 4e-151
     Identities = 265/446 (59%), Positives = 336/446 (75%), Gaps = 2/446 (0%)

gi|28853946|gb|AAO57012.1|  membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
    Length=471
    Score =  484 bits (1246),  Expect = 3e-135
    Identities = 250/471 (53%), Positives = 322/471 (68%), Gaps = 11/471 (2%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:1837




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18979




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:917
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1627
                           PA2240_tr
                           translation of PA2240
                           478
                           99.99
                           99.99
                           0
                           2427.0
     

     
     
58716
                           gb|AAG05628.1|AE004649_19
                           (AE004649) hypothetical protein PA2240 [Pseudomonas aeruginosa PAO1]
                           478
                           99.99
                           99.99
                           0
                           2427.0
     

     
     
58717
                           gb|AAO57012.1|
                           (AE016868) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           487
                           51.33
                           66.11
                           25
                           1252.0
     

     






      

          
GC ORFID: 43919How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2240Glimmer Score: 

          
Start: 1786176Stop: 1787612

          
Length: 1437


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2240 translation of PA2240Homolog Bit Score 939.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6842 (ORF: BLASTX 474.0), t_PA2240 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTTGGGAAACCTCGTCGCTGTCGTCTTCGGCCTGGCCTTCGGCGGAGCGCTGCTGATGCTCAGCCCG 
GCCAAGGCCGGCGCCGCCATGGTCGGCCTGGCGGCCGCGGTCACCATCCTGCGCTTCCCGTTCTGGGGGCTG 
CTGCTGTTCGCCCTGGTGGCGACCTTCATGCCCTACTCCACGGTCAACGTGGGGATCCGTTCGACGGTCAGC 
GAAGCGATTCTCGCCCTGACCTGGGGCGCGGTGCTCTGGCACATCTTCCTCTCGCGCCTGCCGCCGGCGCCG 
GCGCTGCGCTACCGCTCCACCGAGCGCATGCTGCTGTGGCTGATGCTGTTCACCGTGCTGCCGTTCGTGGTC 
GGCCAGGTCAGCATCAAGGCCGAGGCCAGCGGCCTGTCGAACTGGCTGCGCTGGTTGCTCAACCTGTCCATC 
GTGTTCCTCGCCGGACGCCTGCTGGTGGAACGCAAGAACCGCGAGACACTGGTCATCGCCCTGCTGCTGGGC 
ACCCTGGCGATGCTGCTGATGTCCATCGCGGTGTTCATCCGCTACCGCTCGGCGTCGGGGATGGCGCCGATC 
CTGGCGATGTTCAACTACGCCAACCTGGACACCCTCAAGTTCGGCCTGGAGGCGCTTTCCTCGCGAATGGGC 
TCGCCATGGATGCACCCCAACGCCACCGGCGGGATCATGGCCCTGCTGCTGCCCCTGGCGTTCTGCTACGGG 
GTCGCCAACCAGGGCTGGCGGCGCGGCCTGGGCCTCGCCGTGGCGGTccTCGGCGCCGCCGCGATCCTCCTC 
GCCAGTTCCCGCGGGGCGATGCTCAGCCTGGCGGTGGTGCTGTTCTGGATGTCCcTGCGCAAGGTGCCCTAC 
ACCGGCCGCCTGCTGTTGCTCGGGGTCGGCCTGGTGGTGGTCCTGGTGCTCAGCTACCCGCCGTTGCAGGAA 
CGCCTGGCGACCATCTTCTCGCCGCAGAACGCCAGTACCGAGGTGCGCTTCGACGAATACCGGATGTTCCCC 
AAGGCCGTCGCCCGCTATCCGCTGGGAATCGGCTTCAAGGTCGACCCGCCGGTGCCGGGCACCGACCTCCTG 
GGCATCTCCAACCTGTGGCTGAACTTCATGTACAAGGTCGGCCTCGGCGGCATGCTGCTGTTCATCGCGGTG 
ACCTGGCGCTGGTGGCGCGAAGCCCGTCCGGAGAAAGGCCCGATCCGCCTGACCCGCGACAACGCGATCTGG 
CTGGGCAGCACCGGCGGCATCCTGGCGGCGCTGGTCAGCGGCCTGTTCGACCACTACTTCAGCTTCGCCGTG 
GTGATGATCGGCCTGTTCTGGCTGCTGGTCGGGATCAACCTGCTGGAAGCCCGCCGGCTGTTCCCGGAACGC 
CAGCCGCAACCGCGGGCGGTGGGTTATCGCAAGCTCAAGCGACAGCTCGAGCGCGGGGCCGAGGCCTGA