ViewGene
Locus Name:
GeneID:
Location:

GeneID:892
TrivialName: PA14_69890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69890
PAO1 Ortholog Locus:PA5294
Sequence Length:1467
Protein Length:488
Start: 6232688
Stop: 6234154
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08679.1|AE004942_2 (AE004942) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 482/488 (98%), Positives = 483/488 (98%)
Sequence:
ATGTCCTCGCCATCCCTCGTCGAACTCAAAGCCATCCTGCGCCTGGCGGGCCCGTTGATCGCCGCCCAGCTG
GCCTATGTCGCCATGGTCTTCACCGACACCGTGATGATGGGCAAGCTCGGCCCCGACGCGCTGGCCGCCGGC
GGCCTGGGCGCGGTCAGCTACGCCTTCGTCTCGACGTTCTGTGTCGGCGTGGTAGCAGCGGTCGGCAACCTG
GTGGCGATCCGTCACGGCTGCGACGACGCCGCTGGCGCCGCCGCGGCCGCTCGCTCCGGACTCTGGGTCGGC
GCCGCGCTGGCCCTGGCCGCCGGCCTGCTGCTATGGAACCTGCGGCCGCTGCTCCTGCTCTTCGGCCAGGCG
CCGCAGACGGTGGACGGCGCCATGCAGTTCCTCCACAGCCTGACATTCGCCCTGCCCGGCTACATGGCCTTC
ATGGTCCTGCGCGGCTTCACCAGCGCCATCGACCGCGCCGGCCCGGTGATGGCGATCAGCGTGCTCGGCGCG
CTGGCCAACCTGGCTCTCAACTATTCCTTCATAGAAGGCCTGTTCGGCCTGCCGCGCCTGGGCCTGGCCGGT
ATCGGCCTGGTCACCGCCCTCGTCATGAACTGCATGCCGCTGCTGCTGGCCCTGTATATCCGCCGGCAGCCG
GCCTATGCCGCGTACTCGCTGCTGCGCGGACTGGGACGGCCGCAGCGGGCGATGGTCGAGGAGATCCTGCGC
CTGGGGCTGCCCATCGGCGGCACCTACGCGGTGGAGTCGGGGATGTTCACGGTCGCCACCCTGTGCATGGGC
ATCATCGGCGATCACGCCCTGGCCGCGCACCAGATCGCCATCCAGGCGGTATACGTGGCGTTCATGGTGCCG
GTGGGGTTGTCGTACGCCACCACCTACCGCATCGGCCAGCATTTCGGCGCCGGCCGCCTGCTCGAAGCACGC
CGCGCCGGGCGCGTCGGCATCGGCTTCGGCGCGCTGTGCATGCTGCTCTTCGCCGGGCTCTTCTGGTGGATG
CCGGAGGCCATCATCGGCCTGTTCCTCGACCGCGACGCCCCGGCCAACCGGGAGGTGGCCGCGATGGCCGTC
TCGCTGCTGGCGATCGCCGCCTGGTTCGAGCTGTTCGACGGCACCCAGAACGTCGCCATGGGCGCGATCCGC
GGTCTCAAGGACGCCCGCACCACCTTCCTGGTCGGCCTGGCCTGCTACTGGCTGGTTGGCGTGCCGCTGGCC
TGCCTGCTGGCGTTCGCGGCCGGCTGGGGCGCCGCGGGCGTCTGGTGGGGGCTGGCCGGCGGCCTGGCCTGC
GCAGCCATCGGCCTGACCCTGGCCTTCGAGTGGAAGACCGCGCGGTTGCTGCCGAAAGCCACAGCCAGCGAG
ACGTCGGCGCTCAATTGCCGAGCGGCTGGCCGCGGTGCGCCGAGCGCTCGCCGATGCCCAGGAAACGCGCCA
GTTCCGCCAGCGGCAGCGGCGGACTGA
Translation:
MSSPSLVELKAILRLAGPLIAAQLAYVAMVFTDTVMMGKLGPDALAAGGLGAVSYAFVSTFCVGVVAAVGNL
VAIRHGCDDAAGAAAAARSGLWVGAALALAAGLLLWNLRPLLLLFGQAPQTVDGAMQFLHSLTFALPGYMAF
MVLRGFTSAIDRAGPVMAISVLGALANLALNYSFIEGLFGLPRLGLAGIGLVTALVMNCMPLLLALYIRRQP
AYAAYSLLRGLGRPQRAMVEEILRLGLPIGGTYAVESGMFTVATLCMGIIGDHALAAHQIAIQAVYVAFMVP
VGLSYATTYRIGQHFGAGRLLEARRAGRVGIGFGALCMLLFAGLFWWMPEAIIGLFLDRDAPANREVAAMAV
SLLAIAAWFELFDGTQNVAMGAIRGLKDARTTFLVGLACYWLVGVPLACLLAFAAGWGAAGVWWGLAGGLAC
AAIGLTLAFEWKTARLLPKATASETSALNCRAAGRGAPSARRCPGNAPVPPAAAAD*
AnnotationID:901GeneID:892
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 12:12:30
Gene Name:
Confidence Code:3
GeneProduct:putative multidrug resistance protein
Cell Localization:()
Synonyms:PA5294
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0534
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53669.1| (AE016856) multidrug resistance protein NorM, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 460

 Score =  578 bits (1489), Expect = e-164
 Identities = 288/451 (63%), Positives = 341/451 (75%)

>gb|AAN70827.1|AE016727_3 (AE016793) MATE efflux family protein [Pseudomonas putida KT2440]
          Length = 462

 Score =  561 bits (1446), Expect = e-159
 Identities = 281/454 (61%), Positives = 337/454 (74%)








 
Structural Features:
COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]
CD-Length = 455 residues,  98.5% aligned
Score =  249 bits (638), Expect = 4e-67
Identities = 168/457 (36%), Positives = 221/457 (48%), Gaps = 10/457 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1787




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18929




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34803




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:892_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:892
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1587
                           PA5294_tr
                           translation of PA5294
                           488
                           98.77
                           98.97
                           0
                           2453.0
     

     
     
57367
                           gb|AAG08679.1|AE004942_2
                           (AE004942) hypothetical protein PA5294 [Pseudomonas aeruginosa PAO1]
                           488
                           98.77
                           98.97
                           0
                           2453.0
     

     
     
57368
                           gb|AAO53669.1|
                           (AE016856) multidrug resistance protein NorM, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           488
                           59.63
                           70.49
                           28
                           1490.0
     

     
     
57369
                           gb|AAN70827.1|AE016727_3
                           (AE016793) MATE efflux family protein [Pseudomonas putida KT2440]
                           488
                           57.78
                           69.26
                           26
                           1445.0
     

     






      

          
GC ORFID: 43894How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5294Glimmer Score: 

          
Start: 5496376Stop: 5497842

          
Length: 1467


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5294 translation of PA5294Homolog Bit Score 949.0

          
Other Homologs:  t_PA5294 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTCGCCATCCCTCGTCGAACTCAAAGCCATCCTGCGCCTGGCGGGCCCGTTGATCGCCGCCCAGCTG 
GCCTATGTCGCCATGGTCTTCACCGACACCGTGATGATGGGCAAGCTCGGCCCCGACGCGCTGGCCGCCGGC 
GGCCTGGGCGCGGTCAGCTACGCCTTCGTCTCGACGTTCTGTGTCGGCGTGGTAGCAGCGGTCGGCAACCTG 
GTGGCGATCCGTCACGGCTGCGACGACGCCGCTGGCGCCGCCGCGGCCGCTCGCTCCGGACTCTGGGTCGGC 
GCCGCGCTGGCCCTGGCCGCCGGCCTGCTGCTATGGAACCTGCGGCCGCTGCTCCTGCTCTTCGGCCAGGCG 
CCGCAGACGGTGGACGGCGCCATGCAGTTCCTCCACAGCCTGACATTCGCCCTGCCCGGCTACATGGCCTTC 
ATGGTCCTGCGCGGCTTCACCAGCGCCATCGACCGCGCCGGCCCGGTGATGGCGATCAGCGTGCTCGGCGCG 
CTGGCCAACCTGGCTCTCAACTATTCCTTCATAGAAGGCCTGTTCGGCCTGCCGCGCCTGGGCCTGGCCGGT 
ATCGGCCTGGTCACCGCCCTCGTCATGAACTGCATGCCGCTGCTGCTGGCCCTGTATATCCGCCGGCAGCCG 
GCCTATGCCGCGTACTCGCTGCTGCGCGGACTGGGACGGCCGCAGCGGGCGATGGTCGAGGAGATCCTGCGC 
CTGGGGCTGCCCATCGGCGGCACCTACGCGGTGGAGTCGGGGATGTTCACGGTCGCCACCCTGTGCATGGGC 
ATCATCGGCGATCACGCCCTGGCCGCGCACCAGATCGCCATCCAGGCGGTATACGTGGCGTTCATGGTGCCG 
GTGGGGTTGTCGTACGCCACCACCTACCGCATCGGCCAGCATTTCGGCGCCGGCCGCCTGCTCGAAGCACGC 
CGCGCCGGGCGCGTCGGCATCGGCTTCGGCGCGCTGTGCATGCTGCTCTTCGCCGGGCTCTTCTGGTGGATG 
CCGGAGGCCATCATCGGCCTGTTCCTCGACCGCGACGCCCCGGCCAACCGGGAGGTGGCCGCGATGGCCGTC 
TCGCTGCTGGCGATCGCCGCCTGGTTCGAGCTGTTCGACGGCACCCAGAACGTCGCCATGGGCGCGATCCGC 
GGTCTCAAGGACGCCCGCACCACCTTCCTGGTCGGCCTGGCCTGCTACTGGCTGGTTGGCGTGCCGCTGGCC 
TGCCTGCTGGCGTTCGCGGCCGGCTGGGGCGCCGCGGGCGTCTGGTGGGGGCTGGCCGGCGGCCTGGCCTGC 
GCAGCCATCGGCCTGACCCTGGCCTTCGAGTGGAAGACCGCGCGGTTGCTGCCGAAAGCCACAGCCAGCGAG 
ACGTCGGCGCTCAATTGCCGAGCGGCTGGCCGCGGTGCGCCGAGCGCTCGCCGATGCCCAGGAAACGCGCCA 
GTTCCGCCAGCGGCAGCGGCGGACTGA