ViewGene
Locus Name:
GeneID:
Location:

GeneID:849
TrivialName: PA14_56840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56840
PAO1 Ortholog Locus:PA4371
Sequence Length:1422
Protein Length:473
Start: 5063248
Stop: 5064669
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07759.1|AE004853_2 (AE004853) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 470/473 (99%), Positives = 473/473 (100%)
Sequence:
ATGTCGTTGCCGTCACCTTCCATGCCGCTCGCCTGTCTCCTGACGGCGCTCCTTCTGGGCGGATGCGGCGCC
GACGACGAACCGCTGCGCGCCGAGCCCGGTGAACACCTGTCCGGGGGCGCGACCACGGTGCTGCAAAGCGAC
CGCAACGCCTTCTCCCTGCCCTCCGCCAACCTCGCCCCGAGCCGGCGCCTGGACTTCAGCGTGGGCAACAGT
TTCTTCCGCAACCCCTGGGTCATCGCCCCTTCCTCCACCACCGCGCGCGACGGTCTGGGACCGCTGTTCAAT
ACCAACGCCTGCCAGAACTGCCATGTGAAGGACGGCCGCGGCCACCCGCCGGGAGCGGACGCGGTCAGCGCG
GTGTCGATGCTGGTACGCCTGTCGATCCCGGCCGGCCCTGCGGACGGCAAGACCCTGTTGCACCAGGGGGTG
ATTCCCGAGCCGACCTACGGCGGCCAGTTGCAGGACGTCGGCATTCCCGGCGTCGCCCCGGAAGGCAAGGTG
CGGATGGACTACGAGCCGCTGAAGGTGAGGTTCGAGGACGGCACCGAGGTCGAACTGCGCAAGCCGATCCTG
CGGATCAGCCAGCTCGGCTATGGGCCGATGCATCCGCAGACGATGTTTTCCGCCCGCGTCGCCCCGCCGATG
ATCGGGCTCGGCCTGCTCGAGGCGATTCCCGATGAGGCGATCCTGGCCAATGCCGATCCGGACGACCGCAAC
GGCGACGGTATCCGCGGGCGCGCCAACCAGGTCTGGGATGCCGCGCGGCAGCGCACCGCGCTCGGCCGCTTC
GGCTGGAAGGCCGGCCAGCCGGATATCCCGCAGCAGAACGCGCACGCCTTCGCCAACGACATGGGCCTGACC
AGCAGCCTGCTGCCCCACGACGACTGCAGCGCCGCCCAGGTCGAGTGCCGCCGGGCGCCCGACGGCGGCGAG
CCGGAAGTCAGCGACAACATCTTCGCCCAGGTGCTGTTCTACAGCCGCAACCTGGCGGTCCCGGCGCGGCGC
AAGGTGGACGACCCGCAGGTGCTGGCCGGCAAGCGCCTGTTCGCCCAGGCCAACTGCGTGGCCTGCCACGTT
CCCGCCTTCACTACCGGTTCCGACGCCAGCGAGCCGGAGCTGGCCAACCAACGGATTCGTCCCTATTCCGAC
CTGTTGCTGCATGACATGGGCGACGGCTTGGCGGACAATCGCCCGGAATTTCTCGCCAGCGGGCGGGACTGG
CGAACCCCGCCGCTATGGGGCATCGGCCTGACCGAAACGGTCAACGGTCACACCCAGTTCCTCCACGACGGG
CGCGCCCGCAATCTGCTGGAGGCGATCCTCTGGCACGGCGGCGAAGCCGAAGCGGCCAAGCGGCACGTGCTC
GGCTTCGACGCCGACCAGCGCAGCGCCCTGCTGGCCTTCCTGAATTCACTCTGA
Translation:
MSLPSPSMPLACLLTALLLGGCGADDEPLRAEPGEHLSGGATTVLQSDRNAFSLPSANLAPSRRLDFSVGNS
FFRNPWVIAPSSTTARDGLGPLFNTNACQNCHVKDGRGHPPGADAVSAVSMLVRLSIPAGPADGKTLLHQGV
IPEPTYGGQLQDVGIPGVAPEGKVRMDYEPLKVRFEDGTEVELRKPILRISQLGYGPMHPQTMFSARVAPPM
IGLGLLEAIPDEAILANADPDDRNGDGIRGRANQVWDAARQRTALGRFGWKAGQPDIPQQNAHAFANDMGLT
SSLLPHDDCSAAQVECRRAPDGGEPEVSDNIFAQVLFYSRNLAVPARRKVDDPQVLAGKRLFAQANCVACHV
PAFTTGSDASEPELANQRIRPYSDLLLHDMGDGLADNRPEFLASGRDWRTPPLWGIGLTETVNGHTQFLHDG
RARNLLEAILWHGGEAEAAKRHVLGFDADQRSALLAFLNSL*
AnnotationID:858GeneID:849
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 07:07:44
Gene Name:
Confidence Code:3
GeneProduct:putative thiol oxidoreductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3488
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57817.1| (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 475

 Score =  693 bits (1788), Expect = 0.0
 Identities = 340/467 (72%), Positives = 386/467 (82%), Gaps = 8/467 (1%)

>gb|AAO11298.1|AE016807_17 (AE016807) Predicted thiol oxidoreductase [Vibrio vulnificus CMCP6]
          Length = 459

 Score =  570 bits (1469), Expect = e-162
 Identities = 280/437 (64%), Positives = 329/437 (75%), Gaps = 1/437 (0%)







 
Structural Features:
COG3488, Predicted thiol oxidoreductase 
[Energy production and conversion]
CD-Length = 481 residues, 100.0% aligned
Score =  739 bits (1908), Expect = 0.0
Identities = 311/482 (64%), Positives = 350/482 (72%), Gaps = 12/482 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1701




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17122




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:849_cdd.html


    		




 
URL:

















    ReferenceID:18843




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:849
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1533
                           PA4371_tr
                           translation of PA4371
                           473
                           99.36
                           99.99
                           0
                           2489.0
     

     
     
55306
                           gb|AAG07759.1|AE004853_2
                           (AE004853) hypothetical protein PA4371 [Pseudomonas aeruginosa PAO1]
                           473
                           99.36
                           99.99
                           0
                           2489.0
     

     
     
55308
                           gb|AAN66535.1|AE016282_3
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           479
                           71.18
                           79.74
                           10
                           1757.0
     

     
     
55307
                           gb|AAO57817.1|
                           (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           485
                           70.51
                           80.20
                           22
                           1793.0
     

     
     
55311
                           gb|AAF94424.1|
                           (AE004206) hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           474
                           60.12
                           70.88
                           14
                           1460.0
     

     






      

          
GC ORFID: 43851How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4371Glimmer Score: 

          
Start: 4326924Stop: 4328345

          
Length: 1422


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4371 translation of PA4371Homolog Bit Score 963.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1979 (ORF: BLASTX 698.0), t_PA4371 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTTGCCGTCACCTTCCATGCCGCTCGCCTGTCTCCTGACGGCGCTCCTTCTGGGCGGATGCGGCGCC 
GACGACGAACCGCTGCGCGCCGAGCCCGGTGAACACCTGTCCGGGGGCGCGACCACGGTGCTGCAAAGCGAC 
CGCAACGCCTTCTCCCTGCCCTCCGCCAACCTCGCCCCGAGCCGGCGCCTGGACTTCAGCGTGGGCAACAGT 
TTCTTCCGCAACCCCTGGGTCATCGCCCCTTCCTCCACCACCGCGCGCGACGGTCTGGGACCGCTGTTCAAT 
ACCAACGCCTGCCAGAACTGCCATGTGAAGGACGGCCGCGGCCACCCGCCGGGAGCGGACGCGGTCAGCGCG 
GTGTCGATGCTGGTACGCCTGTCGATCCCGGCCGGCCCTGCGGACGGCAAGACCCTGTTGCACCAGGGGGTG 
ATTCCCGAGCCGACCTACGGCGGCCAGTTGCAGGACGTCGGCATTCCCGGCGTCGCCCCGGAAGGCAAGGTG 
CGGATGGACTACGAGCCGCTGAAGGTGAGGTTCGAGGACGGCACCGAGGTCGAACTGCGCAAGCCGATCCTG 
CGGATCAGCCAGCTCGGCTATGGGCCGATGCATCCGCAGACGATGTTTTCCGCCCGCGTCGCCCCGCCGATG 
ATCGGGCTCGGCCTGCTCGAGGCGATTCCCGATGAGGCGATCCTGGCCAATGCCGATCCGGACGACCGCAAC 
GGCGACGGTATCCGCGGGCGCGCCAACCAGGTCTGGGATGCCGCGCGGCAGCGCACCGCGCTCGGCCGCTTC 
GGCTGGAAGGCCGGCCAGCCGGATATCCCGCAGCAGAACGCGCACGCCTTCGCCAACGACATGGGCCTGACC 
AGCAGCCTGCTGCCCCACGACGACTGCAGCGCCGCCCAGGTCGAGTGCCGCCGGGCGCCCGACGGCGGCGAG 
CCGGAAGTCAGCGACAACATCTTCGCCCAGGTGCTGTTCTACAGCCGCAACCTGGCGGTCCCGGCGCGGCGC 
AAGGTGGACGACCCGCAGGTGCTGGCCGGCAAGCGCCTGTTCGCCCAGGCCAACTGCGTGGCCTGCCACGTT 
CCCGCCTTCACTACCGGTTCCGACGCCAGCGAGCCGGAGCTGGCCAACCAACGGATTCGTCCCTATTCCGAC 
CTGTTGCTGCATGACATGGGCGACGGCTTGGCGGACAATCGCCCGGAATTTCTCGCCAGCGGGCGGGACTGG 
CGAACCCCGCCGCTATGGGGCATCGGCCTGACCGAAACGGTCAACGGTCACACCCAGTTCCTCCACGACGGG 
CGCGCCCGCAATCTGCTGGAGGCGATCCTCTGGCACGGCGGCGAAGCCGAAGCGGCCAAGCGGCACGTGCTC 
GGCTTCGACGCCGACCAGCGCAGCGCCCTGCTGGCCTTCCTGAATTCACTCTGA