ViewGene
Locus Name:
GeneID:
Location:

GeneID:838
TrivialName: PA14_64740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64740
PAO1 Ortholog Locus:PA4899
Sequence Length:1470
Protein Length:489
Start: 5768696
Stop: 5767227
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08284.1|AE004903_2 (AE004903) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 487/489 (99%), Positives = 489/489 (100%)
Sequence:
ATGAGCGATTCCCGTTATACCGACCTCGGTCTCCAGCCCCTGGCCGGCGAGTGGCGCCACGGCCGGGCCGGC
CGCCGGCTGAAGGTGAGCAATCCGTTCGACGGCAGCCTGCTGCTGGAGATCGAGCAGGCCGACCGCGACGAC
CTCGATGCCGCCTACGCCAAGGCCGCCGAGGTCCAGCCGGCATGGGCCGCGCTTGGCCCCTCGGCACGCGCG
GCGGTGCTGTACAAGGCGGTGGAGGTGTTCGACCGCCGCCACGAGGAGATCGTCGACTGGCTCATCCGCGAG
TCCGGCAGCACCCGCCTGAAGGCCGAGATCGAATGGGGCGCGGCGCGCGCGATCACCCTGGAGTCGGCGTCG
TTCCCGGCACGGGTGCACGGGCGCATCGTCGAGTCCGACGTGCCGGGCAAGGAAAGCCGGGTCTACCGCAGC
GCCATCGGCGTGGTCGGGGTGATCAGCCCGTGGAACTTCCCGCTGCACCTGACCCAGCGTTCCATCGCCCCG
GCCCTGGCGCTGGGCAACGCGGTGGTGGTCAAGCCGGCCAGCGACACGCCGGTCTGCGGCGGACTGCTGCTG
GCGCGGATCTTCGAAGAGGCCGGGCTGCCGGCCGGGCTGTTCAGCGTGGTGGTCGGCCCCGGCAGTGAGATC
GGCGACGCCTTCGTCGAGCACCCGGTGCCGGGCCTGGTGACCTTCACCGGGTCGACCCCGGTGGGCCGCAAC
ATCGGCCGCATCGCCAGCGGCGGCGCGCACCTCAAGCACGTGGCGCTGGAGCTGGGCGGCAACAGTCCGTTC
GTGGTGCTCGGCGACGCCGACCTGGAGCAGGCGGTGAATGCCGCGGTGTTCGGCAAGTTCCTCCACCAGGGG
CAGATCTGCATGGCGATCAACCGTATCATCGTCGAGGACAGCCTCTACGACGCCTTCGCCGCGCGCTTCGTC
GAGCGGGTCAAGGGTCTCCGCGTCGGCGATCCGCAGCGCGCCGATACCGCGGTCGGGCCGATCGTCAACGCG
CGCCAGCTCGAAGGCCTGCTGGAAAAGATCCGCCTGGCCCGCCAGGAAGGCGCCAAGCCGCTGTACGAGGGC
GGCGTTGATGGGCAGTTGCTGGCTCCGCACGTATTCGGCGAGGTCAGCGCGACGATGGAGATCGCCCGCGAT
GAAATCTTCGGCCCGCTGGTCGGCCTGCTCCGCGCGCGCGACGAGGCGCATGCGCTGGAGTTGGCCAACGCC
AGCGAATACGGGCTGTCCAGCGCGGTGTTCAGCCGCGACCTGGAACGCGCGGTGCGCTTTGCCCGCCAGCTT
CGCGCGGGGATGACCCACGTCAACGACATTCCGGTGAACGACGAGGCCAACGCGCCGTTCGGCGGCGAGAAG
AACTCCGGACTTGGCCGCTTCAACGGCGACTGGGCCATCGAGGAATTCACCACCGACCACTGGATCAGCGTG
CAGCACGCGCCGCGCCAGTACCCGTTCTGA
Translation:
MSDSRYTDLGLQPLAGEWRHGRAGRRLKVSNPFDGSLLLEIEQADRDDLDAAYAKAAEVQPAWAALGPSARA
AVLYKAVEVFDRRHEEIVDWLIRESGSTRLKAEIEWGAARAITLESASFPARVHGRIVESDVPGKESRVYRS
AIGVVGVISPWNFPLHLTQRSIAPALALGNAVVVKPASDTPVCGGLLLARIFEEAGLPAGLFSVVVGPGSEI
GDAFVEHPVPGLVTFTGSTPVGRNIGRIASGGAHLKHVALELGGNSPFVVLGDADLEQAVNAAVFGKFLHQG
QICMAINRIIVEDSLYDAFAARFVERVKGLRVGDPQRADTAVGPIVNARQLEGLLEKIRLARQEGAKPLYEG
GVDGQLLAPHVFGEVSATMEIARDEIFGPLVGLLRARDEAHALELANASEYGLSSAVFSRDLERAVRFARQL
RAGMTHVNDIPVNDEANAPFGGEKNSGLGRFNGDWAIEEFTTDHWISVQHAPRQYPF*
AnnotationID:847GeneID:838
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 13:01:33
Gene Name:
Confidence Code:3
GeneProduct:putative aldehyde dehydrogenase
Cell Localization:()
Synonyms:pchA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative p-hydroxybenzaldehyde dehydrogenase
Functional Category Confidence Code:5
COGs:COG1012,pfam00171
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAA75634.2| (U96338) p-hydroxybenzaldehyde dehydrogenase [Pseudomonas putida]
          Length = 491

 Score =  735 bits (1897), Expect = 0.0
 Identities = 358/484 (73%), Positives = 409/484 (84%)

>gb|AAM92190.1| (AY123786) p-hydroxybenzaldehyde dehydrogenase [Pseudomonas
           mendocina]
          Length = 491

 Score =  724 bits (1870), Expect = 0.0
 Identities = 358/484 (73%), Positives = 406/484 (83%)

>dbj|BAC00062.1| (AP005282) NAD-dependent aldehyde dehydrogenases [Corynebacterium
           glutamicum ATCC 13032]
          Length = 484

 Score =  578 bits (1489), Expect = e-164
 Identities = 282/470 (60%), Positives = 359/470 (76%)








 
Structural Features:
COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
CD-Length = 472 residues,  99.2% aligned
Score =  449 bits (1155), Expect = 4e-127
Identities = 207/474 (43%), Positives = 284/474 (59%), Gaps = 8/474 (1%)

pfam00171, Aldedh, Aldehyde dehydrogenase family.
CD-Length = 464 residues, 100.0% aligned
Score =  438 bits (1127), Expect = 9e-124
Identities = 190/468 (40%), Positives = 281/468 (60%), Gaps = 7/468 (1%)






   
Genomic Context:






   
Comment:
other possible gene name: pcuC


















    ReferenceID:1679




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18821




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35160




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:838_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:838
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1510
                           PA4899_tr
                           translation of PA4899
                           489
                           99.59
                           99.99
                           0
                           2501.0
     

     
     
54687
                           gb|AAG08284.1|AE004903_2
                           (AE004903) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           489
                           99.59
                           99.99
                           0
                           2501.0
     

     
     
54688
                           gb|AAA75634.2|
                           (U96338) p-hydroxybenzaldehyde dehydrogenase [Pseudomonas putida]
                           491
                           73.31
                           83.91
                           2
                           1895.0
     

     
     
54689
                           gb|AAM92190.1|
                           (AY123786) p-hydroxybenzaldehyde dehydrogenase [Pseudomonas mendocina]
                           491
                           73.31
                           83.29
                           2
                           1869.0
     

     
     
54690
                           dbj|BAC00062.1|
                           (AP005282) NAD-dependent aldehyde dehydrogenases [Corynebacterium glutamicum ATCC 13032]
                           493
                           57.60
                           73.42
                           13
                           1481.0
     

     






      

          
GC ORFID: 43840How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4899Glimmer Score: 

          
Start: 5032377Stop: 5030908

          
Length: 1470


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4899 translation of PA4899Homolog Bit Score 967.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1316 (ORF: BLASTX 324.0), t_PA4899 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATTCCCGTTATACCGACCTCGGTCTCCAGCCCCTGGCCGGCGAGTGGCGCCACGGCCGGGCCGGC 
CGCCGGCTGAAGGTGAGCAATCCGTTCGACGGCAGCCTGCTGCTGGAGATCGAGCAGGCCGACCGCGACGAC 
CTCGATGCCGCCTACGCCAAGGCCGCCGAGGTCCAGCCGGCATGGGCCGCGCTTGGCCCCTCGGCACGCGCG 
GCGGTGCTGTACAAGGCGGTGGAGGTGTTCGACCGCCGCCACGAGGAGATCGTCGACTGGCTCATCCGCGAG 
TCCGGCAGCACCCGCCTGAAGGCCGAGATCGAATGGGGCGCGGCGCGCGCGATCACCCTGGAGTCGGCGTCG 
TTCCCGGCACGGGTGCACGGGCGCATCGTCGAGTCCGACGTGCCGGGCAAGGAAAGCCGGGTCTACCGCAGC 
GCCATCGGCGTGGTCGGGGTGATCAGCCCGTGGAACTTCCCGCTGCACCTGACCCAGCGTTCCATCGCCCCG 
GCCCTGGCGCTGGGCAACGCGGTGGTGGTCAAGCCGGCCAGCGACACGCCGGTCTGCGGCGGACTGCTGCTG 
GCGCGGATCTTCGAAGAGGCCGGGCTGCCGGCCGGGCTGTTCAGCGTGGTGGTCGGCCCCGGCAGTGAGATC 
GGCGACGCCTTCGTCGAGCACCCGGTGCCGGGCCTGGTGACCTTCACCGGGTCGACCCCGGTGGGCCGCAAC 
ATCGGCCGCATCGCCAGCGGCGGCGCGCACCTCAAGCACGTGGCGCTGGAGCTGGGCGGCAACAGTCCGTTC 
GTGGTGCTCGGCGACGCCGACCTGGAGCAGGCGGTGAATGCCGCGGTGTTCGGCAAGTTCCTCCACCAGGGG 
CAGATCTGCATGGCGATCAACCGTATCATCGTCGAGGACAGCCTCTACGACGCCTTCGCCGCGCGCTTCGTC 
GAGCGGGTCAAGGGTCTCCGCGTCGGCGATCCGCAGCGCGCCGATACCGCGGTCGGGCCGATCGTCAACGCG 
CGCCAGCTCGAAGGCCTGCTGGAAAAGATCCGCCTGGCCCGCCAGGAAGGCGCCAAGCCGCTGTACGAGGGC 
GGCGTTGATGGGCAGTTGCTGGCTCCGCACGTATTCGGCGAGGTCAGCGCGACGATGGAGATCGCCCGCGAT 
GAAATCTTCGGCCCGCTGGTCGGCCTGCTCCGCGCGCGCGACGAGGCGCATGCGCTGGAGTTGGCCAACGCC 
AGCGAATACGGGCTGTCCAGCGCGGTGTTCAGCCGCGACCTGGAACGCGCGGTGCGCTTTGCCCGCCAGCTT 
CGCGCGGGGATGACCCACGTCAACGACATTCCGGTGAACGACGAGGCCAACGCGCCGTTCGGCGGCGAGAAG 
AACTCCGGACTTGGCCGCTTCAACGGCGACTGGGCCATCGAGGAATTCACCACCGACCACTGGATCAGCGTG 
CAGCACGCGCCGCGCCAGTACCCGTTCTGA