ViewGene
Locus Name:
GeneID:
Location:

GeneID:837
TrivialName: PA14_58410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58410
PAO1 Ortholog Locus:PA4501
Sequence Length:1455
Protein Length:484
Start: 5202483
Stop: 5203937
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07889.1|AE004864_1 (AE004864) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 469/484 (96%), Positives = 478/484 (98%)
Sequence:
GTGATGAGATACCAACGAGTGACCGGCGCGACGCTGGGACTGGCCTTGATGGCATCGGCCGCGCCAGGCTGG
GCGGCGGACGAGCAGGAAACCCCGCCGACCCCGGACAATCCCAGCTACGCCGCCCAGGTGCAGAGCATCCCC
AGCGTGGAGAAACCGATCAAGGGCCAGGCCGGCGCCAGCGGGCTGTTCGAGGGGCAGAGCCTGACCCTGACC
ACCCGCAACTTCTACTCGCGGGAAAACATGAAGGACAGCTTCACCTTCCGCATTCCCAAGGCCGGCGGCGGC
TCCCAGCGCATCCACCAGCGCAACGCCTGGGTCCAGGGCACGGTGCTCAAGTACAGCTCGGGCTACACCCAG
GGCAGCATCGGCTTCGGCTTCGACGTCGCAGCCTTCAACGAGATCGCCCTGGAGCGCGGCAAGGGCCGCATC
GGCGGCGGCGGCAACCGGACCCTGGCGAACAGCGATGGCGAGGCGATCGGCGAATGGTCCAAGCTGGGCGTT
GCCAATATCCGCCTGCGCGCCTCGAACACCGAATTCAAGGCCGGTCGCTTCCTGGTCAACACTCCGGTGTTC
AGCTATATCGACAACCGTGCCCTGCCCTCCAGCTTCACCGGCTTCGCCGTGACCAGCGAGGAGCTGGACAAC
CTCAGCCTGCAGGCCGGCAGCTTCCGCAAGGTCAGCCCGCGAACCGGTTCCGGCGACGAGGACATGACCACC
GAGTACGGCACCCGCCAGGTCAAGGGCGACCGCCTGAACTACCTGGGCGGCAACTACAAGCCGCTCGACGGG
CTGGAGATCTCCCTCTATGGCTCGCATTTCCAGGACGTCTGGAACCAGTACTACCTGGGCGTGACCCACGAC
ATCGGCGACCTCGAGAACGGCATCGCCCTGCGCACCGCCTTCAACGGCTACCACACCGGCGACACCGGCGCG
CGCGAGGCCGGCTACATCGACAACGACACCTGGAGCCTGGCCTTCACCCTCGGCCATCGCGCCCACGCCCTG
ACCCTGGCCTACCAGCAGGTCGACGGCAACGAATACTTCGACTACGTGCACGAAACCTCGGCGATCTTCCTG
GCCAACTCGATGCTGGCCGACTACAACAGCCCCAACGAGAAGTCCGCGCAGATCCGCTACGAGACCGACTGG
AGCTACTACGGGGTCCCCGGCCTGAGCACCGGCGTGTGGTACGTGAAGGGCTGGGACATCGACGGCACCCAC
TACGACGGCGATCGCAACGGTGCCTACGGCAACTACGCCGAGGTGCGCGCCCAGGACGGCGAGAAGCACCAC
GAGCTGGGCCTGATGGCGGCCTACAAGGTGCAGAACGGGCCGATCAAGGACAGCACCTTCAAGCTCACCTAC
ATGATGCACAAGGCCAGCCAGAACCAGGTCGACGGCAGCGTCAACGAACTGCGCCTGGTCAGCACCTTCCCC
TTCAACCTGCTGTAA
Translation:
MMRYQRVTGATLGLALMASAAPGWAADEQETPPTPDNPSYAAQVQSIPSVEKPIKGQAGASGLFEGQSLTLT
TRNFYSRENMKDSFTFRIPKAGGGSQRIHQRNAWVQGTVLKYSSGYTQGSIGFGFDVAAFNEIALERGKGRI
GGGGNRTLANSDGEAIGEWSKLGVANIRLRASNTEFKAGRFLVNTPVFSYIDNRALPSSFTGFAVTSEELDN
LSLQAGSFRKVSPRTGSGDEDMTTEYGTRQVKGDRLNYLGGNYKPLDGLEISLYGSHFQDVWNQYYLGVTHD
IGDLENGIALRTAFNGYHTGDTGAREAGYIDNDTWSLAFTLGHRAHALTLAYQQVDGNEYFDYVHETSAIFL
ANSMLADYNSPNEKSAQIRYETDWSYYGVPGLSTGVWYVKGWDIDGTHYDGDRNGAYGNYAEVRAQDGEKHH
ELGLMAAYKVQNGPIKDSTFKLTYMMHKASQNQVDGSVNELRLVSTFPFNLL*
AnnotationID:846GeneID:837
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 06:06:32
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane porin
Cell Localization:()
Synonyms:PA4501
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58008.1| (AE016872) outer membrane porin, OprD family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 459

 Score =  451 bits (1159), Expect = e-126
 Identities = 227/453 (50%), Positives = 299/453 (66%), Gaps = 15/453 (3%)








 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family
CD-Length = 449 residues,  92.9% aligned
Score =  206 bits (526), Expect = 7e-54
Identities = 138/433 (31%), Positives = 199/433 (45%), Gaps = 52/433 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14233




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18819




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31544




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:837_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:837
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1509
                           PA4501_tr
                           translation of PA4501
                           484
                           96.90
                           98.76
                           0
                           2501.0
     

     
     
54684
                           gb|AAG07889.1|AE004864_1
                           (AE004864) probable porin [Pseudomonas aeruginosa PAO1]
                           484
                           96.69
                           98.76
                           0
                           2498.0
     

     
     
54685
                           gb|AAO58008.1|
                           (AE016872) outer membrane porin, OprD family [Pseudomonas syringae pv. tomato str. DC3000]
                           484
                           47.52
                           63.01
                           25
                           1169.0
     

     
     
54686
                           gb|AAN66508.1|AE016279_11
                           (AE016777) porin, putative [Pseudomonas putida KT2440]
                           484
                           45.04
                           62.60
                           25
                           1093.0
     

     






      

          
GC ORFID: 43839How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4501Glimmer Score: 

          
Start: 4466161Stop: 4467615

          
Length: 1455


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4501 translation of PA4501Homolog Bit Score 967.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5614 (ORF: BLASTX 443.0), t_PA4501 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATGAGATACCAACGAGTGACCGGCGCGACGCTGGGACTGGCCTTGATGGCATCGGCCGCGCCAGGCTGG 
GCGGCGGACGAGCAGGAAACCCCGCCGACCCCGGACAATCCCAGCTACGCCGCCCAGGTGCAGAGCATCCCC 
AGCGTGGAGAAACCGATCAAGGGCCAGGCCGGCGCCAGCGGGCTGTTCGAGGGGCAGAGCCTGACCCTGACC 
ACCCGCAACTTCTACTCGCGGGAAAACATGAAGGACAGCTTCACCTTCCGCATTCCCAAGGCCGGCGGCGGC 
TCCCAGCGCATCCACCAGCGCAACGCCTGGGTCCAGGGCACGGTGCTCAAGTACAGCTCGGGCTACACCCAG 
GGCAGCATCGGCTTCGGCTTCGACGTCGCAGCCTTCAACGAGATCGCCCTGGAGCGCGGCAAGGGCCGCATC 
GGCGGCGGCGGCAACCGGACCCTGGCGAACAGCGATGGCGAGGCGATCGGCGAATGGTCCAAGCTGGGCGTT 
GCCAATATCCGCCTGCGCGCCTCGAACACCGAATTCAAGGCCGGTCGCTTCCTGGTCAACACTCCGGTGTTC 
AGCTATATCGACAACCGTGCCCTGCCCTCCAGCTTCACCGGCTTCGCCGTGACCAGCGAGGAGCTGGACAAC 
CTCAGCCTGCAGGCCGGCAGCTTCCGCAAGGTCAGCCCGCGAACCGGTTCCGGCGACGAGGACATGACCACC 
GAGTACGGCACCCGCCAGGTCAAGGGCGACCGCCTGAACTACCTGGGCGGCAACTACAAGCCGCTCGACGGG 
CTGGAGATCTCCCTCTATGGCTCGCATTTCCAGGACGTCTGGAACCAGTACTACCTGGGCGTGACCCACGAC 
ATCGGCGACCTCGAGAACGGCATCGCCCTGCGCACCGCCTTCAACGGCTACCACACCGGCGACACCGGCGCG 
CGCGAGGCCGGCTACATCGACAACGACACCTGGAGCCTGGCCTTCACCCTCGGCCATCGCGCCCACGCCCTG 
ACCCTGGCCTACCAGCAGGTCGACGGCAACGAATACTTCGACTACGTGCACGAAACCTCGGCGATCTTCCTG 
GCCAACTCGATGCTGGCCGACTACAACAGCCCCAACGAGAAGTCCGCGCAGATCCGCTACGAGACCGACTGG 
AGCTACTACGGGGTCCCCGGCCTGAGCACCGGCGTGTGGTACGTGAAGGGCTGGGACATCGACGGCACCCAC 
TACGACGGCGATCGCAACGGTGCCTACGGCAACTACGCCGAGGTGCGCGCCCAGGACGGCGAGAAGCACCAC 
GAGCTGGGCCTGATGGCGGCCTACAAGGTGCAGAACGGGCCGATCAAGGACAGCACCTTCAAGCTCACCTAC 
ATGATGCACAAGGCCAGCCAGAACCAGGTCGACGGCAGCGTCAACGAACTGCGCCTGGTCAGCACCTTCCCC 
TTCAACCTGCTGTAA