ViewGene
Locus Name:
GeneID:
Location:

GeneID:788
TrivialName: PA14_54000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54000
PAO1 Ortholog Locus:PA0792
Sequence Length:1485
Protein Length:494
Start: 4788579
Stop: 4790063
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04181.1|AE004514_4 (AE004514) propionate catabolic protein PrpD [Pseudomonas aeruginosa PAO1]
Identities = 491/494 (99%), Positives = 492/494 (99%)
Sequence:
ATGAGTGCCAACGTCGATCTCAACCAACGTCCCGACTACGACGCCGTCCTGCAGGACATCGCCGACTACGTG
CTGGACTACCGCATCGATTCCGCGGAGGCCCTGGACACCGCCCGCAACTGCCTGATGGATACCCTCGGCTGC
GGCCTGCTGGCGCTGCGCTTCCCGGAATGCACCAAGCACCTCGGCCCGCTGGTCGAGGGCACCCTGGTCCCG
CACGGCGCGCGGGTGCCGGGCACCTCCTTCCGGCTCGACCCGGTCAAGGCCGCCTGGGACATCGGCTGCATC
GTCCGCTGGCTGGACTACAACGACACCTGGCTGGCCGCCGAGTGGGGCCATCCCTCGGACAACCTCGGCGGC
ATCCTCGCCGTCGCCGACCACCTCTCGCAGAAACGCCTGGCCAACGGCGAAGCGCCGCTGAGCATGCGCCAG
GTACTGGAAGCGATGATCATGGCCCACGAGATCCAGGGCGTGATCGCCCTGGAGAACTCGTTCAATCGCGTC
GGCCTCGACCATGTGCTGCTGGTCAAGGTCGCGTCCACCGCCGTCTGCGCCAAGCTGATGGGGGCCGACCGC
GAGCAACTGCTGGCCGCCCTCTCCCACGCCTTCGTCGACGGCCAGGCCCTGCGCACCTACCGTCACGCACCG
AACGCCGGCTCGCGCAAGTCCTGGGCCGCTGGCGACGCGACGAGCCGCGGCGTACGCCTGGCGGACATCGCC
TTGCGCGGCGAGATGGGCATCCCCGGCGTGCTCAGCGCGCCGCAGTGGGGTTTCTACGATGTCCTGTTCAGC
CACACCAGCAAGGACCTGGCGACCAAGCCCGAGGACAAGCGGCGCTTCAGCTTCCCCCAGGGCTACGGCAGC
TACGTGATGGAAAACGTGCTGTTCAAGATCAGCTTCCCCGCCGAATTCCACGCGCAGACCGCCGCCGAGGCC
GCCGTGCGCCTGCATCCGCTGGTGAAGGACCGCCTGCAACGGATCAGCCGCATCGTCATCACCACCCACGAG
TCGGCGATCCGCATCATTTCCAAGGTCGGCCCGCTGGCCAACCCCGCCGACCGCGACCATTGCCTGCAGTAC
ATGACCGCCGTGCCGCTGATCTTCGGCGACCTGGTGGCCGAGCACTACGAGGACGCCTTCCACGCCGCCCAC
CCGCTGATCGACCGCTTGCGCGAGAAAATGGAGATCGTCGAGGAGCCGCGCTACAGCCGTGAATACCTGGAG
GCGGACAAGCGCTCCATCGCCAACGCCCTGGAAGTGTTCTTCGACGACGGCAGCAGCACCGGCCAGGTCGCC
GTGGAGTACCCGCTCGGCCATCGCCGCCGGCGCGCCGAAAGCATTCCGCTGCTGCAGGAGAAGTTCAAGGCC
AACCTGGCCACGCGCTTCCCGCCGCAGCGCTGCCAAAGGATCTTCGACCTGTGCAGCCACCAGGCGTCACTG
GAAGCCACGCCGGTGAACCGCTTCATGGACCTCCTGGCGATCTGA
Translation:
MSANVDLNQRPDYDAVLQDIADYVLDYRIDSAEALDTARNCLMDTLGCGLLALRFPECTKHLGPLVEGTLVP
HGARVPGTSFRLDPVKAAWDIGCIVRWLDYNDTWLAAEWGHPSDNLGGILAVADHLSQKRLANGEAPLSMRQ
VLEAMIMAHEIQGVIALENSFNRVGLDHVLLVKVASTAVCAKLMGADREQLLAALSHAFVDGQALRTYRHAP
NAGSRKSWAAGDATSRGVRLADIALRGEMGIPGVLSAPQWGFYDVLFSHTSKDLATKPEDKRRFSFPQGYGS
YVMENVLFKISFPAEFHAQTAAEAAVRLHPLVKDRLQRISRIVITTHESAIRIISKVGPLANPADRDHCLQY
MTAVPLIFGDLVAEHYEDAFHAAHPLIDRLREKMEIVEEPRYSREYLEADKRSIANALEVFFDDGSSTGQVA
VEYPLGHRRRRAESIPLLQEKFKANLATRFPPQRCQRIFDLCSHQASLEATPVNRFMDLLAI*
AnnotationID:797GeneID:788
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 15:03:38
Gene Name:prpD
Confidence Code:2
GeneProduct:propionate catabolic protein PrpD
Cell Localization:()
Synonyms:PA0792
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03972, COG207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate 
dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism.
       CD-Length = 446 residues, 100.0% aligned
       Score =  465 bits (1199), Expect = 9e-132






   
Genomic Context:






   
Comment:


















    ReferenceID:1579




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18721




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:788
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1401
                           PA0792_tr
                           translation of PA0792
                           494
                           99.39
                           99.59
                           0
                           2553.0
     

     
     
51637
                           gb|AAG04181.1|AE004514_4
                           (AE004514) propionate catabolic protein PrpD [Pseudomonas aeruginosa PAO1]
                           494
                           99.39
                           99.59
                           0
                           2553.0
     

     
     
51638
                           gb|AAN67951.1|AE016427_6
                           (AE016782) 2-methylcitrate dehydratase [Pseudomonas putida KT2440]
                           494
                           81.78
                           88.66
                           0
                           2130.0
     

     
     
51647
                           gb|AAL03992.1|AF325554_5
                           (AF325554) PrpD [Ralstonia eutropha]
                           497
                           62.57
                           74.44
                           16
                           1556.0
     

     
     
51640
                           emb|CAE42642.1|
                           (BX640418) 2-methylcitrate dehydratase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           498
                           62.24
                           74.09
                           17
                           1575.0
     

     






      

          
GC ORFID: 43790How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0792Glimmer Score: 

          
Start: 165328Stop: 163844

          
Length: 1485


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0792 translation of PA0792Homolog Bit Score 988.0

          
Other Homologs:  t_PA0792 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGCCAACGTCGATCTCAACCAACGTCCCGACTACGACGCCGTCCTGCAGGACATCGCCGACTACGTG 
CTGGACTACCGCATCGATTCCGCGGAGGCCCTGGACACCGCCCGCAACTGCCTGATGGATACCCTCGGCTGC 
GGCCTGCTGGCGCTGCGCTTCCCGGAATGCACCAAGCACCTCGGCCCGCTGGTCGAGGGCACCCTGGTCCCG 
CACGGCGCGCGGGTGCCGGGCACCTCCTTCCGGCTCGACCCGGTCAAGGCCGCCTGGGACATCGGCTGCATC 
GTCCGCTGGCTGGACTACAACGACACCTGGCTGGCCGCCGAGTGGGGCCATCCCTCGGACAACCTCGGCGGC 
ATCCTCGCCGTCGCCGACCACCTCTCGCAGAAACGCCTGGCCAACGGCGAAGCGCCGCTGAGCATGCGCCAG 
GTACTGGAAGCGATGATCATGGCCCACGAGATCCAGGGCGTGATCGCCCTGGAGAACTCGTTCAATCGCGTC 
GGCCTCGACCATGTGCTGCTGGTCAAGGTCGCGTCCACCGCCGTCTGCGCCAAGCTGATGGGGGCCGACCGC 
GAGCAACTGCTGGCCGCCCTCTCCCACGCCTTCGTCGACGGCCAGGCCCTGCGCACCTACCGTCACGCACCG 
AACGCCGGCTCGCGCAAGTCCTGGGCCGCTGGCGACGCGACGAGCCGCGGCGTACGCCTGGCGGACATCGCC 
TTGCGCGGCGAGATGGGCATCCCCGGCGTGCTCAGCGCGCCGCAGTGGGGTTTCTACGATGTCCTGTTCAGC 
CACACCAGCAAGGACCTGGCGACCAAGCCCGAGGACAAGCGGCGCTTCAGCTTCCCCCAGGGCTACGGCAGC 
TACGTGATGGAAAACGTGCTGTTCAAGATCAGCTTCCCCGCCGAATTCCACGCGCAGACCGCCGCCGAGGCC 
GCCGTGCGCCTGCATCCGCTGGTGAAGGACCGCCTGCAACGGATCAGCCGCATCGTCATCACCACCCACGAG 
TCGGCGATCCGCATCATTTCCAAGGTCGGCCCGCTGGCCAACCCCGCCGACCGCGACCATTGCCTGCAGTAC 
ATGACCGCCGTGCCGCTGATCTTCGGCGACCTGGTGGCCGAGCACTACGAGGACGCCTTCCACGCCGCCCAC 
CCGCTGATCGACCGCTTGCGCGAGAAAATGGAGATCGTCGAGGAGCCGCGCTACAGCCGTGAATACCTGGAG 
GCGGACAAGCGCTCCATCGCCAACGCCCTGGAAGTGTTCTTCGACGACGGCAGCAGCACCGGCCAGGTCGCC 
GTGGAGTACCCGCTCGGCCATCGCCGCCGGCGCGCCGAAAGCATTCCGCTGCTGCAGGAGAAGTTCAAGGCC 
AACCTGGCCACGCGCTTCCCGCCGCAGCGCTGCCAAAGGATCTTCGACCTGTGCAGCCACCAGGCGTCACTG 
GAAGCCACGCCGGTGAACCGCTTCATGGACCTCCTGGCGATCTGA