ViewGene
Locus Name:
GeneID:
Location:

GeneID:744
TrivialName: PA14_14530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14530
PAO1 Ortholog Locus:PA3825
Sequence Length:1572
Protein Length:523
Start: 1242132
Stop: 1243703
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07212.1|AE004800_1 (AE004800) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 506/508 (99%), Positives = 507/508 (99%)
Sequence:
ATGCCGATTCCGGTGAAGCGAGCCAGGAGAAAGGCGCTCCGGCTGTCGTTGTCCGTGCTGGTCGGGGTGATG
CCGATCGTCCTGGGGCTGCTCATCCTCTACTGGCAGGCCGAGCGAAGCCTCCAGGAGACGTCCGAGCAGGCA
GCCGGGAATGCGGTGCGGCAGTTCGAACGGATGCTCGACAACGCTGCGTTGGCGGCGCGCAAGGTCATGCCG
GTGGCGGGGCGTCCTTGTCCCGAGGCCGAGCTGGCGCTGCGCGAGCAAGTGGCGATCATGCCGTTCGTGCGC
TCGGTCAATTTGACGCGCGACAATACGATCTATTGCACGTCGTTGTTCGGCGGCTTCGACGAGCCGGTGCGG
ATCGAGAACTATGTCGACGGACGCCTCTTGCTGATGCCCGGCAACCAGGTCACGCCGGACGCCGCGCTGCTG
GTCCTGCGGGACTTCGACGGCAAGCGCGGGGTATTGGCGGCGATCGACGGGCGCTACTTGAGCTACGTGCTG
GACCTCGTCGACCGACGTAGCCGACAGGTGCTGGTGGTCGGTCCCAATTGGCTGGATGCCGAGGGCCGCACT
CACCGCGACGCGCCGCCCACCTATGAGGTCGCCGCCGTATCGCTCGCTTCGCAGCGTTATCCGTTGCGGGTG
CTGTCGGGTTTCCCCGAGGGCGAGGAATGGCGATCGATCCGCTCGCAGAACCCGGCGATGTTCGGCCTGCTA
CTGTTCTTCGGACTGCTGGCCGGCACTCTGTGCTACTGGCTATCCAGGCGGGTCGCCTCGCCCAGCAGCGAA
CTGCGCCGGGCCCTGGAGGCCAACGAGTTCATTCCCTACTACCAGCCGCTGAGTCCCGGCCAGGGCGGACGC
TGGATAGGCGTCGAGGTGCTCATGCGCTGGCGTCATCCGCGCGAGGGACTGATCCGGCCCGACCTGTTCATA
CCTTTCGCCGAGCGCTCGGGACTGATCGTACCGATGACGCGCGCGCTGATGCGCCAGGTCGGGGAAGACCTG
GGCGGGCATGCCGGGAAGCTGGAGCCAGGCTTCCACATCGGTTTCAACATCAGTGCCACCCATTGCCACGAA
CTGGCCTTGGTGGACGACTGTCGCGAGCTGTTGGCGGCGTTTCCGCCCGGGCACATCACCCTGGTCCTGGAA
CTGACCGAGCGCGAGCTGATCGAGTCGAGCGAAGTCACCGACCGCCTGTTCGACGAATTGCATGCCCTGGGA
GTGAAGATCGCCATCGACGATTTCGGCACTGGACATTCCAGCCTGGCCTACCTGCGCAAGTTCCAGGTGGAC
TGCCTGAAGATCGACCAGAGCTTCATCGCCCGCATCGGCATCGATACCCTTTCCGGGCATATTCTCGACAGC
ATCGTCGAGCTGTCCGCCAAGCTCGACCTGGATATCGTCGCCGAAGGCGTGGAGACCCCCGAGCAGCGTGAC
TACCTGGCCGCCCGCGGGGTGGATTACCTGCAGGGCTACCTGATCGGCCGGCCGATGCCGCTGGAGAGTCTG
CTTTCCAGTTTGGCAGGGGGGCGGCCAGCGTGCGATAGCGAGTGCAGTGCCGGGCGCTAG
Translation:
MPIPVKRARRKALRLSLSVLVGVMPIVLGLLILYWQAERSLQETSEQAAGNAVRQFERMLDNAALAARKVMP
VAGRPCPEAELALREQVAIMPFVRSVNLTRDNTIYCTSLFGGFDEPVRIENYVDGRLLLMPGNQVTPDAALL
VLRDFDGKRGVLAAIDGRYLSYVLDLVDRRSRQVLVVGPNWLDAEGRTHRDAPPTYEVAAVSLASQRYPLRV
LSGFPEGEEWRSIRSQNPAMFGLLLFFGLLAGTLCYWLSRRVASPSSELRRALEANEFIPYYQPLSPGQGGR
WIGVEVLMRWRHPREGLIRPDLFIPFAERSGLIVPMTRALMRQVGEDLGGHAGKLEPGFHIGFNISATHCHE
LALVDDCRELLAAFPPGHITLVLELTERELIESSEVTDRLFDELHALGVKIAIDDFGTGHSSLAYLRKFQVD
CLKIDQSFIARIGIDTLSGHILDSIVELSAKLDLDIVAEGVETPEQRDYLAARGVDYLQGYLIGRPMPLESL
LSSLAGGRPACDSECSAGR*
AnnotationID:753GeneID:744
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 20:08:04
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3825
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01948,COG4943
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
cd01948, EAL, EAL domain.
CD-Length = 240 residues,  99.6% aligned
Score =  260 bits (666), Expect = 3e-70

COG4943, Predicted signal transduction protein containing sensor 
and EAL domains 
[Signal transduction mechanisms]
CD-Length = 524 residues,  96.9% aligned
Score =  235 bits (600), Expect = 1e-62
Identities = 146/521 (28%), Positives = 222/521 (42%), Gaps = 35/521 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1491




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18633




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31732




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:744_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:744
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1295
                           PA3825_tr
                           translation of PA3825
                           526
                           96.95
                           97.33
                           3
                           2591.0
     

     
     
48757
                           gb|AAG07212.1|AE004800_1
                           (AE004800) hypothetical protein PA3825 [Pseudomonas aeruginosa PAO1]
                           526
                           96.95
                           97.33
                           3
                           2591.0
     

     
     
48758
                           gb|AAN69037.1|AE016536_5
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           530
                           51.13
                           63.96
                           9
                           1340.0
     

     
     
48759
                           gb|AAQ57793.1|
                           (AE016910) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           529
                           44.04
                           55.76
                           22
                           1004.0
     

     
     
48760
                           gb|AAR13157.1|
                           (AF135182) unknown [Serratia entomophila]
                           565
                           29.20
                           38.58
                           199
                           676.0
     

     






      

          
GC ORFID: 43746How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3825Glimmer Score: 

          
Start: 3711806Stop: 3710235

          
Length: 1572


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3825 translation of PA3825Homolog Bit Score 1004.0

          
Other Homologs:  t_PA3825 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGATTCCGGTGAAGCGAGCCAGGAGAAAGGCGCTCCGGCTGTCGTTGTCCGTGCTGGTCGGGGTGATG 
CCGATCGTCCTGGGGCTGCTCATCCTCTACTGGCAGGCCGAGCGAAGCCTCCAGGAGACGTCCGAGCAGGCA 
GCCGGGAATGCGGTGCGGCAGTTCGAACGGATGCTCGACAACGCTGCGTTGGCGGCGCGCAAGGTCATGCCG 
GTGGCGGGGCGTCCTTGTCCCGAGGCCGAGCTGGCGCTGCGCGAGCAAGTGGCGATCATGCCGTTCGTGCGC 
TCGGTCAATTTGACGCGCGACAATACGATCTATTGCACGTCGTTGTTCGGCGGCTTCGACGAGCCGGTGCGG 
ATCGAGAACTATGTCGACGGACGCCTCTTGCTGATGCCCGGCAACCAGGTCACGCCGGACGCCGCGCTGCTG 
GTCCTGCGGGACTTCGACGGCAAGCGCGGGGTATTGGCGGCGATCGACGGGCGCTACTTGAGCTACGTGCTG 
GACCTCGTCGACCGACGTAGCCGACAGGTGCTGGTGGTCGGTCCCAATTGGCTGGATGCCGAGGGCCGCACT 
CACCGCGACGCGCCGCCCACCTATGAGGTCGCCGCCGTATCGCTCGCTTCGCAGCGTTATCCGTTGCGGGTG 
CTGTCGGGTTTCCCCGAGGGCGAGGAATGGCGATCGATCCGCTCGCAGAACCCGGCGATGTTCGGCCTGCTA 
CTGTTCTTCGGACTGCTGGCCGGCACTCTGTGCTACTGGCTATCCAGGCGGGTCGCCTCGCCCAGCAGCGAA 
CTGCGCCGGGCCCTGGAGGCCAACGAGTTCATTCCCTACTACCAGCCGCTGAGTCCCGGCCAGGGCGGACGC 
TGGATAGGCGTCGAGGTGCTCATGCGCTGGCGTCATCCGCGCGAGGGACTGATCCGGCCCGACCTGTTCATA 
CCTTTCGCCGAGCGCTCGGGACTGATCGTACCGATGACGCGCGCGCTGATGCGCCAGGTCGGGGAAGACCTG 
GGCGGGCATGCCGGGAAGCTGGAGCCAGGCTTCCACATCGGTTTCAACATCAGTGCCACCCATTGCCACGAA 
CTGGCCTTGGTGGACGACTGTCGCGAGCTGTTGGCGGCGTTTCCGCCCGGGCACATCACCCTGGTCCTGGAA 
CTGACCGAGCGCGAGCTGATCGAGTCGAGCGAAGTCACCGACCGCCTGTTCGACGAATTGCATGCCCTGGGA 
GTGAAGATCGCCATCGACGATTTCGGCACTGGACATTCCAGCCTGGCCTACCTGCGCAAGTTCCAGGTGGAC 
TGCCTGAAGATCGACCAGAGCTTCATCGCCCGCATCGGCATCGATACCCTTTCCGGGCATATTCTCGACAGC 
ATCGTCGAGCTGTCCGCCAAGCTCGACCTGGATATCGTCGCCGAAGGCGTGGAGACCCCCGAGCAGCGTGAC 
TACCTGGCCGCCCGCGGGGTGGATTACCTGCAGGGCTACCTGATCGGCCGGCCGATGCCGCTGGAGAGTCTG 
CTTTCCAGTTTGGCAGGGGGGCGGCCAGCGTGCGATAGCGAGTGCAGTGCCGGGCGCTAG