ViewGene
Locus Name:
GeneID:
Location:

GeneID:7238
TrivialName: PA14_23350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23350
PAO1 Ortholog Locus:
Sequence Length:300
Protein Length:99
Start: 2026291
Stop: 2026590
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGCAATGGTTCAGGCGATCTGCCGCTATAGCGGTTCTGCTAGTGGTATCTATCGTAGTTGTGGTTTTCGTT
CTGGAGAATCAGGGGCTGGTTCAGGTGGCCTTCCTCGGTCTTCAGTCTCCTCAGTGGCCCCTGGCCGTCTAT
CTCATCACAGCCTTTGTCCTTGGTGGACTCCTGGGGTTGGCCATCCAACTGCCTTCCCTGGCTATCTCGCGT
GCACGAGCCAGTGGCCTGCGCGCGGAGTTGGAGCAGGCTCGTAAAGAGGTTGACAGCTTGCGGGTGCCTTCC
AGTTCATCCTGA
Translation:
MQWFRRSAAIAVLLVVSIVVVVFVLENQGLVQVAFLGLQSPQWPLAVYLITAFVLGGLLGLAIQLPSLAISR
ARASGLRAELEQARKEVDSLRVPSSSS*
AnnotationID:7244GeneID:7238
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 12:12:01
Gene Name:ORF_3
Confidence Code:4
GeneProduct:hypothetical orfA
Cell Localization:()
Synonyms:orfA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|20560110|gb|AAM27849.1|  ORF_3; hypothetical orfA [Pseudomonas aeruginosa]
gi|20560087|gb|AAM27829.1|  ORF_3; hypothetical orfA [Pseudomonas aeruginosa]
     Length=100
     Score =  154 bits (390),  Expect = 6e-37
     Identities = 81/99 (81%), Positives = 89/99 (89%), Gaps = 0/99 (0%)






 
Structural Features:






   
Genomic Context:
Part of variable O-antigen biosynthetic locus in P. aeruginosa.







   
Comment:
Most similar to the variant of ORF_3 (hypothetical orfA) found in P. aeruginosa serotypes 07 and 08.



















    ReferenceID:38214




  
Author/Investigator(s):
        Raymond,C.K., Sims,E.H., Kas,A., Spencer,D.H., Kutyavin,T.V., Ivey,R.G., Zhou,Y., Kaul,R., Clendenning,J.B. and Olson,M.V.





  
Title:
        Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa




  
PubMed:
        12057956


MedLine:
        




    
Source:
J. Bacteriol. 184 (13), 3614-3622 (2002)







    
Reference Type:Journal 







    
Data:


    		




 
URL: