ViewGene

Locus Name:
GeneID:
Location:

GeneID:7187
TrivialName: PA14_07920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07920
PAO1 Ortholog Locus:
Sequence Length:2304
Protein Length:767
Start: 685160
Stop: 682857
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
GTGGAGTTCACCGTTCTTGATCACCGCGGTGCGGATGGCAATGGCGGTGTCCATGTTGCCGTTCCATGCCAG
GTAGCCGACCGCGCCGCCGTAGACTCCACGCTTGACCGGCTCCAGCTCGTCGATGATCTCCATGGCGCGGAT
CTTCGGCGCGCCGGACAGCGTACCCGCCGGCAGGATCGCCCGCAGCGCGTCCATCGCGCTGAGCCCCTCGCG
CAATTGCCCGGTGACGTTGGACACGATGTGCATGACGTTGGAGTAACGTTCGATCACCATTTTTTCGGTGAC
CTTCACCGCGCCGATGTCGGACACCCGCCCCACGTCGTTGCGCCCCAGGTCGATCAGCATCAGGTGCTCGGC
GATCTCCTTGGCGTCCGACAGCAGATCCTGCTCCAGCGCCAGGTCGGCCTCTTCGTTGATCCCGCGCGGACG
GGTACCGGCGATCGGGCGCACCGTCACCAGGCCATCCTCGACCCGTACCAGCACCTCCGGCGAGCTGCCCAC
GACATGGAAGTCGCCGAAGTTGAAGAAGTACATGTAGGGCGTCGGATTGAAACAGCGCAGCGCGCGGTACAG
GTCGATGGGCGCCGCCTTGAACTCGATGGACATGCGCTGCGACGGCACCACCTGCATGCAGTCGCCGGCCAG
GATGTAGTCCTTGATCCTTCCTACCGCGTTTTCATAGTCCTCGCGGGTGAAGCTGGCACGAAACGCCGGCTC
CCGGCCCTGGGCCGCCTCGAGGTCGAGGCCGCGACGCGGGGTGATCGGCTGGCGCAGACGCTCCAGCAGCTC
CTCCAGACGTGCCTGGCCGCGCTCGTAGGCATTTTCCTCGGAGGGATCGGCGAGGACGATGGCGTGGATCTT
CCCAGCCAGGTTGTCGAATACCACTACGGCATCGGACACCATCAACAGGATATCCGGGTTGCCCAGCGGGTC
CGGGTTCGGACAGGTGGCCAGGCGTTTTTCCACGTAGCGCACGCAGTCGTAACCGAAATAGCCGACCAGGCC
TCCATCGAAACGTGGCAAGCCGGGCACGGTGGGCACCTGGTAGCGCGCCTTGAACTCCTCGACGAAAGCCAG
CGGGTCGGCGCAATCGAAGCGCTCGGTTTCCATGCCATCGATGCTGATCCGCACTTGATGGTCGTAGACCCG
CAGCACCGTGCGACACGGCAGGCCGATGATCGAATAGCGCCCCCATTTCTCGCCGCCCTGCACCGACTCCAG
CAGGTAGGAGTTCGGCGCGTCGGCCAGCTTCAGGTAGATCGACAGCGGCGTGTCGAAGTCGGCAAGGGTCTC
GAAGGACAGCGGGATGCGGTTGTAGCCATCGGCGGCCAGCCGCAGGAATTCTTCGCGATTCATGATCAGCCT
CATCGGAGGAGAGAACGGTCAACAGGGTGCAAACGCGCGCCGGCTATCCGGCGGAGGATGATGTCAGGCGCG
CCAGCGCCAACGCGCCAGGGCCTTGATGACCTTCATCCAGAGTTTGCTGACCGCCACGGCTTGATCTCGCTG
GTCGGAGGGGGAAAGGGAGTCGTCCGGCAACACTATCTCAGCGGCCTGGTCGGCGCAAGGCAGCAGGTCGCG
CAGGTTGTCGATGACCAGGGTGGGCGCTTCCTCGGCGATCGGCCGGCCGTGGTTGTAGCCATAGGTCAGCGC
CGCGCAGCGCACACCGGCAGCCTTGGCGGCGAGCACGTCGTTGCGCGAGTCACCGACGAACAACGCATCTTC
GGGCTCGATGCCGGCCATCTTCATCACGAACAGCAGCGCCGCCGGGTCGGGCTTCTGCTGCGGCAGGGTGTC
GCCGCCGATGATCCAGCGGAAATAGCGACCCAGCTTCATCTCATCCAGCAGCGGAGCGACGAAGCGCTCCGG
CTTGTTGGTGATCAGCGCCATTTCCACGCCGTTGCGCTTGAGCCACTTGAGGGTGTCGACGACGCCGGGGTA
GACCTCGGTGAGCGCATGACTGTCGGCATAGGCCTCCATGAACAGCGCCAGCGCGGCTTCGGTTTCTTCCTC
ACCAATGCCGTCATGCTCGATGCTTCCCGCCAGGGCGCGACGCACCAGCACACGCGCGCCGTTACCGATCCA
CTGGCGGACCTTCTCGATGCCCGCCGGTGGCCGCCCGAGGCTGGCGAGCATGCTGTCGACCGCGGCGGTGAG
GTCGGGAACGGAATCGACCAACGTGCCATCCAGGTCGAACATCACCAGACGCGGCAGGCGCGTGGCGAAGAA
CGGCTCCGCAGCGCTCATTACTGGTGCGCCTGGGCCAGTTCGGCATGCATGGCGCGGATGACCTCGGCGTAG
Translation:
MEFTVLDHRGADGNGGVHVAVPCQVADRAAVDSTLDRLQLVDDLHGADLRRAGQRTRRQDRPQRVHRAEPLA
QLPGDVGHDVHDVGVTFDHHFFGDLHRADVGHPPHVVAPQVDQHQVLGDLLGVRQQILLQRQVGLFVDPART
GTGDRAHRHQAILDPYQHLRRAAHDMEVAEVEEVHVGRRIETAQRAVQVDGRRLELDGHALRRHHLHAVAGQ
DVVLDPSYRVFIVLAGEAGTKRRLPALGRLEVEAATRGDRLAQTLQQLLQTCLAALVGIFLGGIGEDDGVDL
PSQVVEYHYGIGHHQQDIRVAQRVRVRTGGQAFFHVAHAVVTEIADQASIETWQAGHGGHLVARLELLDESQ
RVGAIEALGFHAIDADPHLMVVDPQHRATRQADDRIAPPFLAALHRLQQVGVRRVGQLQVDRQRRVEVGKGL
EGQRDAVVAIGGQPQEFFAIHDQPHRRRERSTGCKRAPAIRRRMMSGAPAPTRQGLDDLHPEFADRHGLISL
VGGGKGVVRQHYLSGLVGARQQVAQVVDDQGGRFLGDRPAVVVAIGQRRAAHTGSLGGEHVVARVTDEQRIF
GLDAGHLHHEQQRRRVGLLLRQGVAADDPAEIATQLHLIQQRSDEALRLVGDQRHFHAVALEPLEGVDDAGV
DLGERMTVGIGLHEQRQRGFGFFLTNAVMLDASRQGATHQHTRAVTDPLADLLDARRWPPEAGEHAVDRGGE
VGNGIDQRAIQVEHHQTRQARGEERLRSAHYWCAWASSACMARMTSA*
AnnotationID:7187GeneID:7187
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:47
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:16918
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:31443
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 50189How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 6486503Stop: 6484200
Length: 2304
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGAGTTCACCGTTCTTGATCACCGCGGTGCGGATGGCAATGGCGGTGTCCATGTTGCCGTTCCATGCCAG
GTAGCCGACCGCGCCGCCGTAGACTCCACGCTTGACCGGCTCCAGCTCGTCGATGATCTCCATGGCGCGGAT
CTTCGGCGCGCCGGACAGCGTACCCGCCGGCAGGATCGCCCGCAGCGCGTCCATCGCGCTGAGCCCCTCGCG
CAATTGCCCGGTGACGTTGGACACGATGTGCATGACGTTGGAGTAACGTTCGATCACCATTTTTTCGGTGAC
CTTCACCGCGCCGATGTCGGACACCCGCCCCACGTCGTTGCGCCCCAGGTCGATCAGCATCAGGTGCTCGGC
GATCTCCTTGGCGTCCGACAGCAGATCCTGCTCCAGCGCCAGGTCGGCCTCTTCGTTGATCCCGCGCGGACG
GGTACCGGCGATCGGGCGCACCGTCACCAGGCCATCCTCGACCCGTACCAGCACCTCCGGCGAGCTGCCCAC
GACATGGAAGTCGCCGAAGTTGAAGAAGTACATGTAGGGCGTCGGATTGAAACAGCGCAGCGCGCGGTACAG
GTCGATGGGCGCCGCCTTGAACTCGATGGACATGCGCTGCGACGGCACCACCTGCATGCAGTCGCCGGCCAG
GATGTAGTCCTTGATCCTTCCTACCGCGTTTTCATAGTCCTCGCGGGTGAAGCTGGCACGAAACGCCGGCTC
CCGGCCCTGGGCCGCCTCGAGGTCGAGGCCGCGACGCGGGGTGATCGGCTGGCGCAGACGCTCCAGCAGCTC
CTCCAGACGTGCCTGGCCGCGCTCGTAGGCATTTTCCTCGGAGGGATCGGCGAGGACGATGGCGTGGATCTT
CCCAGCCAGGTTGTCGAATACCACTACGGCATCGGACACCATCAACAGGATATCCGGGTTGCCCAGCGGGTC
CGGGTTCGGACAGGTGGCCAGGCGTTTTTCCACGTAGCGCACGCAGTCGTAACCGAAATAGCCGACCAGGCC
TCCATCGAAACGTGGCAAGCCGGGCACGGTGGGCACCTGGTAGCGCGCCTTGAACTCCTCGACGAAAGCCAG
CGGGTCGGCGCAATCGAAGCGCTCGGTTTCCATGCCATCGATGCTGATCCGCACTTGATGGTCGTAGACCCG
CAGCACCGTGCGACACGGCAGGCCGATGATCGAATAGCGCCCCCATTTCTCGCCGCCCTGCACCGACTCCAG
CAGGTAGGAGTTCGGCGCGTCGGCCAGCTTCAGGTAGATCGACAGCGGCGTGTCGAAGTCGGCAAGGGTCTC
GAAGGACAGCGGGATGCGGTTGTAGCCATCGGCGGCCAGCCGCAGGAATTCTTCGCGATTCATGATCAGCCT
CATCGGAGGAGAGAACGGTCAACAGGGTGCAAACGCGCGCCGGCTATCCGGCGGAGGATGATGTCAGGCGCG
CCAGCGCCAACGCGCCAGGGCCTTGATGACCTTCATCCAGAGTTTGCTGACCGCCACGGCTTGATCTCGCTG
GTCGGAGGGGGAAAGGGAGTCGTCCGGCAACACTATCTCAGCGGCCTGGTCGGCGCAAGGCAGCAGGTCGCG
CAGGTTGTCGATGACCAGGGTGGGCGCTTCCTCGGCGATCGGCCGGCCGTGGTTGTAGCCATAGGTCAGCGC
CGCGCAGCGCACACCGGCAGCCTTGGCGGCGAGCACGTCGTTGCGCGAGTCACCGACGAACAACGCATCTTC
GGGCTCGATGCCGGCCATCTTCATCACGAACAGCAGCGCCGCCGGGTCGGGCTTCTGCTGCGGCAGGGTGTC
GCCGCCGATGATCCAGCGGAAATAGCGACCCAGCTTCATCTCATCCAGCAGCGGAGCGACGAAGCGCTCCGG
CTTGTTGGTGATCAGCGCCATTTCCACGCCGTTGCGCTTGAGCCACTTGAGGGTGTCGACGACGCCGGGGTA
GACCTCGGTGAGCGCATGACTGTCGGCATAGGCCTCCATGAACAGCGCCAGCGCGGCTTCGGTTTCTTCCTC
ACCAATGCCGTCATGCTCGATGCTTCCCGCCAGGGCGCGACGCACCAGCACACGCGCGCCGTTACCGATCCA
CTGGCGGACCTTCTCGATGCCCGCCGGTGGCCGCCCGAGGCTGGCGAGCATGCTGTCGACCGCGGCGGTGAG
GTCGGGAACGGAATCGACCAACGTGCCATCCAGGTCGAACATCACCAGACGCGGCAGGCGCGTGGCGAAGAA
CGGCTCCGCAGCGCTCATTACTGGTGCGCCTGGGCCAGTTCGGCATGCATGGCGCGGATGACCTCGGCGTAG