ViewGene
Locus Name:
GeneID:
Location:

GeneID:7186
TrivialName: PA14_07880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07880
PAO1 Ortholog Locus:
Sequence Length:1398
Protein Length:465
Start: 681267
Stop: 679870
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK22647.1| (AE005742) ISCc2, transposase, fusion [Caulobacter crescentus CB15]
Identities = 115/444 (25%), Positives = 158/444 (35%), Gaps = 82/444 (18%)
Sequence:
GTGTTTCGTGCGGATCCCCCTCTCCCCGCCCTCCGGGCAGTCTTTTTTCCGAAGGGAGAGGGGAACCGGTTG
GCCTTCTCGGAAGGCGCTCTATCCCAGGCGCAGGCGGCTGGCGCCCACCAGCCAGCTGTAGACGACGTAGAG
CACCAGGGTAGCGAGCAGCAGCAGGCCGCCGAGGGCGGTGGCCATGCCCCAGTTGATGGTGCTGTTGGTATA
GAAGGCGACGAAGTAGCTGACCATCTGGTCGTTCGGGCTGCCCAGCAGCGCCGGGGTGATGTAGTAGCCGAT
GGACAGGATGAACACCAGCAGGCAACCGGCGCCGACGCCCGCGACGGTCTGTGGGAAATACACCCGCCAGAA
GCTGGCGAACGGGTGGCAGCCGAGGGAAATCGCGGCGCGCATGTAGCTCGGCGAAATGCCCTTCATCACGCT
GTAGATCGGCAGGATCATGAACGGCAGCATGATGTGCACCATCGCGATGTATACGCCGGTGCGGTTGAACAC
CAGTTGCAGCGGCTGGTCGATCAGGCCGAGCTTGAGCAGCGCGCCGTTGATCAGGCCACCCGATTGCAGCAG
GACGATCCAGGCGGCGACACGCACCAGGATCGAGGTCCAGAACGGCAGCAGGACCAGGATCATCAGCAGGTT
GCTCTTGCGCGTCGGCAGGTTGGCCAGCAGGTAGGCCAGCGGGTAGGCCAGCAGCAGGCAGATGACGGTGAT
CACCGCGCCCATCCAGAAGGTGCGGGCGAAGATGTCCAGGTAGATGGCCTGGTCCGGGGTGGCGCGCGCCAC
TTCGCCGAGATCGTCGATCCGGTGGTCGAGGGCTGCGAGCAGGTAATAGGGCGTATAGCTGCTGGCGTTGCG
GCGGATCACCTGCCAGTAGGCGGGGTCGCCCCAGCGCTCGTCGAGCTGCTCCATGGCGTCCTTGTAGGAAGC
GGGCTCCTCCTTGAACGGCAGCTTGCGCGCGGTCTTCGCCATCAGGCTGCGATAACCGGCCAGCTCCATGTT
CAGGCGCTTGGAGAGATCGCCGATGGCCTGGTTGCGACGAGCCTCGGCGAGATCCTGGCTGAGCGCCTTGTA
GACGGCGTCGGCCGGCAGCGACTTGCCGTCCCAGGCGGAGATGGCCTCTACCGTCAGCGGCAACGAGCGAAC
CACTTCCGGGTTGGACACGCTCTTGTAGAGCAGCGCGGCGATCGGCACCAGGAAGGTCAGGACCAGGAAGGC
CAGCAGGGGCAGGATCAGCGCCTGGGACTTCAGGCGGTTCATCCGCTCGGCGCGCGCCAGGCGTTGCTTGAG
GGTGCTGCCGGTGGCCTGGGACATGGGCACAGCTGTGGCCATAGCGAACTCCGGAAAAAAAGCGGGCCGTCG
GGAACGACCCTGGAAAGTGTGGAACGGTAG
Translation:
MFRADPPLPALRAVFFPKGEGNRLAFSEGALSQAQAAGAHQPAVDDVEHQGSEQQQAAEGGGHAPVDGAVGI
EGDEVADHLVVRAAQQRRGDVVADGQDEHQQATGADARDGLWEIHPPEAGERVAAEGNRGAHVARRNALHHA
VDRQDHERQHDVHHRDVYAGAVEHQLQRLVDQAELEQRAVDQATRLQQDDPGGDTHQDRGPERQQDQDHQQV
ALARRQVGQQVGQRVGQQQADDGDHRAHPEGAGEDVQVDGLVRGGARHFAEIVDPVVEGCEQVIGRIAAGVA
ADHLPVGGVAPALVELLHGVLVGSGLLLERQLARGLRHQAAITGQLHVQALGEIADGLVATSLGEILAERLV
DGVGRQRLAVPGGDGLYRQRQRANHFRVGHALVEQRGDRHQEGQDQEGQQGQDQRLGLQAVHPLGARQALLE
GAAGGLGHGHSCGHSELRKKSGPSGTTLESVER*
AnnotationID:7186GeneID:7186
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:37
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16917




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31441




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 50188How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6482610Stop: 6481213

          
Length: 1398


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold13_revised_gene2238 related to: gi|18576147|ref|XP_100220.1| (XM_100220) similar to H2A histone family, member C (H. sapiens) [Homo sapiens]Homolog Bit Score 471.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2238 related to: gi|18576147|ref|XP_100220.1| (XM_100220) similar to H2A histone family, member C (H. sapiens) [Homo sapiens] (BLASTP 471)

          
GC ORF Sequence

           
GTGTTTCGTGCGGATCCCCCTCTCCCCGCCCTCCGGGCAGTCTTTTTTCCGAAGGGAGAGGGGAACCGGTTG 
GCCTTCTCGGAAGGCGCTCTATCCCAGGCGCAGGCGGCTGGCGCCCACCAGCCAGCTGTAGACGACGTAGAG 
CACCAGGGTAGCGAGCAGCAGCAGGCCGCCGAGGGCGGTGGCCATGCCCCAGTTGATGGTGCTGTTGGTATA 
GAAGGCGACGAAGTAGCTGACCATCTGGTCGTTCGGGCTGCCCAGCAGCGCCGGGGTGATGTAGTAGCCGAT 
GGACAGGATGAACACCAGCAGGCAACCGGCGCCGACGCCCGCGACGGTCTGTGGGAAATACACCCGCCAGAA 
GCTGGCGAACGGGTGGCAGCCGAGGGAAATCGCGGCGCGCATGTAGCTCGGCGAAATGCCCTTCATCACGCT 
GTAGATCGGCAGGATCATGAACGGCAGCATGATGTGCACCATCGCGATGTATACGCCGGTGCGGTTGAACAC 
CAGTTGCAGCGGCTGGTCGATCAGGCCGAGCTTGAGCAGCGCGCCGTTGATCAGGCCACCCGATTGCAGCAG 
GACGATCCAGGCGGCGACACGCACCAGGATCGAGGTCCAGAACGGCAGCAGGACCAGGATCATCAGCAGGTT 
GCTCTTGCGCGTCGGCAGGTTGGCCAGCAGGTAGGCCAGCGGGTAGGCCAGCAGCAGGCAGATGACGGTGAT 
CACCGCGCCCATCCAGAAGGTGCGGGCGAAGATGTCCAGGTAGATGGCCTGGTCCGGGGTGGCGCGCGCCAC 
TTCGCCGAGATCGTCGATCCGGTGGTCGAGGGCTGCGAGCAGGTAATAGGGCGTATAGCTGCTGGCGTTGCG 
GCGGATCACCTGCCAGTAGGCGGGGTCGCCCCAGCGCTCGTCGAGCTGCTCCATGGCGTCCTTGTAGGAAGC 
GGGCTCCTCCTTGAACGGCAGCTTGCGCGCGGTCTTCGCCATCAGGCTGCGATAACCGGCCAGCTCCATGTT 
CAGGCGCTTGGAGAGATCGCCGATGGCCTGGTTGCGACGAGCCTCGGCGAGATCCTGGCTGAGCGCCTTGTA 
GACGGCGTCGGCCGGCAGCGACTTGCCGTCCCAGGCGGAGATGGCCTCTACCGTCAGCGGCAACGAGCGAAC 
CACTTCCGGGTTGGACACGCTCTTGTAGAGCAGCGCGGCGATCGGCACCAGGAAGGTCAGGACCAGGAAGGC 
CAGCAGGGGCAGGATCAGCGCCTGGGACTTCAGGCGGTTCATCCGCTCGGCGCGCGCCAGGCGTTGCTTGAG 
GGTGCTGCCGGTGGCCTGGGACATGGGCACAGCTGTGGCCATAGCGAACTCCGGAAAAAAAGCGGGCCGTCG 
GGAACGACCCTGGAAAGTGTGGAACGGTAG