ViewGene

Locus Name:
GeneID:
Location:

GeneID: 7170

TrivialName: PA14_07160

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_07160

PAO1 Ortholog Locus:

Sequence Length: 1878

Protein Length: 625

Start: 621205

Stop: 619328

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 98/329 (29%), Positives = 118/329 (35%), Gaps = 41/329 (12%)

Sequence:

GTGTCCGGCGACGTCGAGCATACGGTTGGCGAATCCCCATTCGTTGTCGAACCAGGCCAGCAGGTTGACCAG
GCGAGGCCCGGAAACGCGGGTCTGGCTGCCATCGACGATGGCCGAATGGGGGTCGTGGTTGAAATCGCAACT
GGCGTGCGGCAGCTCGGTATAAGCCAGCAGTCCGCGCAGCGGGCCGCTTTCGGCGGCCTCGCGAAGCACCCG
GTTGATCTCGGCGGCGGAGGTGTCGCGGGAAGTCTGCAGGGTGATGTCCAGCGCCGAGACGTTCACCGTGGG
CACGCGTATGGCTTTGGCCTGGATGCGCCCGGCAAGTTCCGGCAACAGGCGTTCGATGCCGCGCGCCAGACC
GGTGGACACCGGGATCACCGACTGGAACGCCGAACGGGTACGGCGCAGGTCCTCATGGTGGTAGGCGTCGAT
CACCGGCTGGTCGTTCATCGCCGAGTGGATGGTGGTGATCGACACGTATTCCAGGCCGATCGCCTCGTTCAG
CAGCTTGAGCAGCGGCACCCCGCAATTGGTCGTGCAGGAGGCGTTGGAGACCAGCGTTTCGCGGCCGCTGAG
GTCCTGCTGGTTGACCCCATAGACGATGGTGGCGTCGATGTCCGCCTCGCTCGCCATCGGCTGCGAGAACAG
CACCCGCGGCGCGCCGGCGCGGAGGAAACGCTCGGCCTGGGCGCGATTGGTGTACTGGCCGGAGCACTCCAG
CACCAGGTCGACCCGCAGCGCCTGCCAGTCGATGGCTTCCGGAGTCGGGCTGCGCAGCACCTTCACGCAATC
GCCGTTGATGTGCAGGCAGTCGCCGTCGACCTTCACTTCGCCGGGAAAGCGGCCATGGGTGGAGTCGAAGCG
GGTCAGGTACTCGACGCTGGCCTGGTCGGCCAGGTCGTTCAGCGCGACGATCTCGAAGCCCAGTTGCTCCGG
GCGCTCGTGCAGCGCGCGCAGGACGCAGCGGCCGATACGGCCATAGCCATTGAGCGCGACGCGAAAAGGCGG
GGTGGACATCGGCAGGGAGAGCTCCGGCAAGGGGCCAGTGAAAGGCGCCAATTATGCGGGGGATGGGCCCGC
CTGGGAACCGTCCGCGACCCGCGCGGCGCGGCATGCGCCGCGGCGACGGCTCGCGCGCTGGCGCTGAAACGA
TTCATGCGACACCCGGCTGGCGCGACCGCGTTCCGCTGTGCAAGGCTCGCCCGCATCCACCGACCGCCAGGA
GCGCCAGATGCCCCGCTTCGCCGCCAACCTCAGCATGCTCTACCCCCGCCACGACTTCCTCGATCGCTTCGC
CGCTGCCGCGGCGGACGGCTACGAGGGCGTGGAGTACCTGTTCCCCTATGCCTATCCTGCGGCCGAACTGAA
GGCCCGGCTGGACGACCACGGCTTGCGCCAGGTGCTGTTCAATGCCGCACCCGGCGACTGGGACAAGGGCGA
GCGCGGCCTGGCCAGCCTGCCGGGGCGCGAGGCCGAATTCCGCCGCGCCATCGCCCAGGCCATCGACTATGC
CCAGGTCCTCGGCAACCGCCACATCCATGTCATGGCCGGACTGCTGCCGGCCGGCGCCGACCGCATCCGCCA
CCGCGAGACCTACCTCGACAACCTCGCCCATGCCGCCCGCGAAGCCGCCGGCGCCAGGCTGACGGTGCTCAT
AGAGCCGATCAACAACCGCGACATGCCGGGCTTCTTCCTCACCCGCCAGGACGACGCCCAGGCCATCTGCCG
CGAGGTCGGCGCGGACAACCTGCAGGTACAGTTCGACTGCTACCACTGCCAGATCGTCGAGGGCGACCTGGC
CACCACCCTGCGTCGCGACATCGGCAATATCGGCCACGTCCAGATCGCCGGGGTACCCGACCGCCACGAGCC
GGATGA

Translation:

MSGDVEHTVGESPFVVEPGQQVDQARPGNAGLAAIDDGRMGVVVEIATGVRQLGISQQSAQRAAFGGLAKHP
VDLGGGGVAGSLQGDVQRRDVHRGHAYGFGLDAPGKFRQQAFDAARQTGGHRDHRLERRTGTAQVLMVVGVD
HRLVVHRRVDGGDRHVFQADRLVQQLEQRHPAIGRAGGVGDQRFAAAEVLLVDPIDDGGVDVRLARHRLREQ
HPRRAGAEETLGLGAIGVLAGALQHQVDPQRLPVDGFRSRAAQHLHAIAVDVQAVAVDLHFAGKAAMGGVEA
GQVLDAGLVGQVVQRDDLEAQLLRALVQRAQDAAADTAIAIERDAKRRGGHRQGELRQGASERRQLCGGWAR
LGTVRDPRGAACAAATARALALKRFMRHPAGATAFRCARLARIHRPPGAPDAPLRRQPQHALPPPRLPRSLR
RCRGGRLRGRGVPVPLCLSCGRTEGPAGRPRLAPGAVQCRTRRLGQGRARPGQPAGARGRIPPRHRPGHRLC
PGPRQPPHPCHGRTAAGRRRPHPPPRDLPRQPRPCRPRSRRRQADGAHRADQQPRHAGLLPHPPGRRPGHLP
RGRRGQPAGTVRLLPLPDRRGRPGHHPASRHRQYRPRPDRRGTRPPRAG*

AnnotationID:7170 GeneID:7170

AnnotatorUID: diggins

Modification Date/Time: 2004-08-16 18:06:03

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16898

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:31409

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33842

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 7170_cdd.html

URL:

GC ORFID: `50172`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `6422547`	Stop: `6420670`
Length: `1878`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGTCCGGCGACGTCGAGCATACGGTTGGCGAATCCCCATTCGTTGTCGAACCAGGCCAGCAGGTTGACCAG GCGAGGCCCGGAAACGCGGGTCTGGCTGCCATCGACGATGGCCGAATGGGGGTCGTGGTTGAAATCGCAACT GGCGTGCGGCAGCTCGGTATAAGCCAGCAGTCCGCGCAGCGGGCCGCTTTCGGCGGCCTCGCGAAGCACCCG GTTGATCTCGGCGGCGGAGGTGTCGCGGGAAGTCTGCAGGGTGATGTCCAGCGCCGAGACGTTCACCGTGGG CACGCGTATGGCTTTGGCCTGGATGCGCCCGGCAAGTTCCGGCAACAGGCGTTCGATGCCGCGCGCCAGACC GGTGGACACCGGGATCACCGACTGGAACGCCGAACGGGTACGGCGCAGGTCCTCATGGTGGTAGGCGTCGAT CACCGGCTGGTCGTTCATCGCCGAGTGGATGGTGGTGATCGACACGTATTCCAGGCCGATCGCCTCGTTCAG CAGCTTGAGCAGCGGCACCCCGCAATTGGTCGTGCAGGAGGCGTTGGAGACCAGCGTTTCGCGGCCGCTGAG GTCCTGCTGGTTGACCCCATAGACGATGGTGGCGTCGATGTCCGCCTCGCTCGCCATCGGCTGCGAGAACAG CACCCGCGGCGCGCCGGCGCGGAGGAAACGCTCGGCCTGGGCGCGATTGGTGTACTGGCCGGAGCACTCCAG CACCAGGTCGACCCGCAGCGCCTGCCAGTCGATGGCTTCCGGAGTCGGGCTGCGCAGCACCTTCACGCAATC GCCGTTGATGTGCAGGCAGTCGCCGTCGACCTTCACTTCGCCGGGAAAGCGGCCATGGGTGGAGTCGAAGCG GGTCAGGTACTCGACGCTGGCCTGGTCGGCCAGGTCGTTCAGCGCGACGATCTCGAAGCCCAGTTGCTCCGG GCGCTCGTGCAGCGCGCGCAGGACGCAGCGGCCGATACGGCCATAGCCATTGAGCGCGACGCGAAAAGGCGG GGTGGACATCGGCAGGGAGAGCTCCGGCAAGGGGCCAGTGAAAGGCGCCAATTATGCGGGGGATGGGCCCGC CTGGGAACCGTCCGCGACCCGCGCGGCGCGGCATGCGCCGCGGCGACGGCTCGCGCGCTGGCGCTGAAACGA TTCATGCGACACCCGGCTGGCGCGACCGCGTTCCGCTGTGCAAGGCTCGCCCGCATCCACCGACCGCCAGGA GCGCCAGATGCCCCGCTTCGCCGCCAACCTCAGCATGCTCTACCCCCGCCACGACTTCCTCGATCGCTTCGC CGCTGCCGCGGCGGACGGCTACGAGGGCGTGGAGTACCTGTTCCCCTATGCCTATCCTGCGGCCGAACTGAA GGCCCGGCTGGACGACCACGGCTTGCGCCAGGTGCTGTTCAATGCCGCACCCGGCGACTGGGACAAGGGCGA GCGCGGCCTGGCCAGCCTGCCGGGGCGCGAGGCCGAATTCCGCCGCGCCATCGCCCAGGCCATCGACTATGC CCAGGTCCTCGGCAACCGCCACATCCATGTCATGGCCGGACTGCTGCCGGCCGGCGCCGACCGCATCCGCCA CCGCGAGACCTACCTCGACAACCTCGCCCATGCCGCCCGCGAAGCCGCCGGCGCCAGGCTGACGGTGCTCAT AGAGCCGATCAACAACCGCGACATGCCGGGCTTCTTCCTCACCCGCCAGGACGACGCCCAGGCCATCTGCCG CGAGGTCGGCGCGGACAACCTGCAGGTACAGTTCGACTGCTACCACTGCCAGATCGTCGAGGGCGACCTGGC CACCACCCTGCGTCGCGACATCGGCAATATCGGCCACGTCCAGATCGCCGGGGTACCCGACCGCCACGAGCC GGATGA