ViewGene

Locus Name:
GeneID:
Location:

GeneID:7137
TrivialName: PA14_05760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05760
PAO1 Ortholog Locus:
Sequence Length:1551
Protein Length:516
Start: 508165
Stop: 509715
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAB56653.1| (AL939105) putative membrane transport protein [Streptomyces coelicolor A3(2)]
Identities = 98/373 (26%), Positives = 136/373 (36%), Gaps = 44/373 (11%)
Sequence:
GTGCTGCACCGCCTGCACGGTGAGGTCCTCGCCGAGCGCCACGCAGTCGCCGCCGGCGTAGATGCCGGGGAT
GCTGGTGCGCATCTGTCCGTCGACCTGGATGCGCTCGCCGTCGCGCCGCAGTTGCGCTGCCAGCGGATCGCC
CAGGCTGGCGCCTTCGAAGGCCTGGCCGATGGCCTTGAAGATGGCGTCGGCGGCCAGTTCGAAGTGCTCGCC
GGTGTCGCCCAGGCGACCGTTCTCCAGGCGCGTGCGGGCGAAGCGCATGCCGCGCACCCGGCCTTGCTCGTC
AAGCAGTACCCGTTCCGGTCGGGCCCAGGTCAGCAGGCGCACCTGGCTGGCCTTGGCGATCTCCTGCTCGTG
GCCGGTGGCGCCCATTTCCTCGAAGCCACGGCGGTAGACCAGGTTGACGTCGCGGGCGCCGAGCCGGCTCAT
CTGCACCGCCATGTCGATGGCGGTGTTGCCGGCGCCGATGACGATGCAACGGTCGGCGACGGGCAGGTCGAG
CAGGTCGTCGCTCTGCCGCAGCTCGCGGATGTAGTCGGTGGCGGCGAGCAGGCCGGGGGCGTCCTCGTCTTC
CAGGCCGAGGCGCTTGCTGGCGGCCAGGCCGATGCCGAGGAACACCGCGTCGTACTCGTCGTGCAGGGCGCC
GAGCGCCAGGTTGTCGCCGAGACGCTGGCCGTGGCGCAGTTCGATACCGCCGATCTGCAGGAGGAATTCCAC
TTCGCGCCGGGCGAAGTCGTCCACCAGCTTGTAGCGGGCGATGCCGTACTCGTTGAGGCCGCCGACCTTGGC
GCGGGCCTCGAAGAGCACCACGTCGTGGCCGTGCATGGCCAGGCGGTGGGCGCAGGACAGCCCGGCCGGCCC
GGCGCCGACCACGGCGATGCGCTTGCCGGTGGCCGGCGAGCGCTTGAACGGATGTTCGCCGAAGCCGGCGTG
GTCGAGGGCGTAGCGTTGCAACTGGCCGATCAGCACCGGTGCGCATTCCTGGGCGTTGTTGCGTACGCAGGC
CCGCTGGCAGAGGATTTCCGTGGGGCAGACGCGGGCGCAGCTGCCGCCGAGGATGTTCGCCGAGAGGATCTT
CTGCGCCGCGCCCTGGACATTCTCCTGGGCGATGCTGCGGATGAACCCGGGGATGTCGATCTCGGTCGGGCA
GGCGTTGACGCAGGGCGCGTCGTAGCAGTACAGGCAGCGGGCGCTTTCCAGGGCGGCCTGGCGGGCGTTGAG
CGGCGGCGCGAGGTCGGCGAAGCGCTCGGCGAGCGTGTCCGCGCCGGCGTCCGGACGGGGGAGGTGGTTCAG
GGAATCGATCACGGTTGTAGCCTCTCTTCTGGTTTCTTCTCGGGGCAGTCAACGGCAATACGGCACCGTCCG
GCCTCTACGGGCCGGTCCGGTATTGCGGGAAGGATCAGCGCTCGACGGCGACCGGGCGCTGGCGTTCGGCGC
GGCGGCCGAGCACTTCGTACACCGACGGGTAGGCCGGGCGCTCCACGTAGCGTCCGGCGCCGGGTTCGGCGC
GCAGGTCGCCGGCGGCCCAGAGCAGCTTGCCCTGGCTGA
Translation:
MLHRLHGEVLAERHAVAAGVDAGDAGAHLSVDLDALAVAPQLRCQRIAQAGAFEGLADGLEDGVGGQFEVLA
GVAQATVLQARAGEAHAAHPALLVKQYPFRSGPGQQAHLAGLGDLLLVAGGAHFLEATAVDQVDVAGAEPAH
LHRHVDGGVAGADDDATVGDGQVEQVVALPQLADVVGGGEQAGGVLVFQAEALAGGQADAEEHRVVLVVQGA
ERQVVAETLAVAQFDTADLQEEFHFAPGEVVHQLVAGDAVLVEAADLGAGLEEHHVVAVHGQAVGAGQPGRP
GADHGDALAGGRRALERMFAEAGVVEGVALQLADQHRCAFLGVVAYAGPLAEDFRGADAGAAAAEDVRREDL
LRRALDILLGDAADEPGDVDLGRAGVDAGRVVAVQAAGAFQGGLAGVERRREVGEALGERVRAGVRTGEVVQ
GIDHGCSLSSGFFSGQSTAIRHRPASTGRSGIAGRISARRRPGAGVRRGGRALRTPTGRPGAPRSVRRRVRR
AGRRRPRAACPG*
AnnotationID:7137GeneID:7137
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 12:12:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:16861
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:31344
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 50139How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 6309507Stop: 6311057
Length: 1551
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCTGCACCGCCTGCACGGTGAGGTCCTCGCCGAGCGCCACGCAGTCGCCGCCGGCGTAGATGCCGGGGAT
GCTGGTGCGCATCTGTCCGTCGACCTGGATGCGCTCGCCGTCGCGCCGCAGTTGCGCTGCCAGCGGATCGCC
CAGGCTGGCGCCTTCGAAGGCCTGGCCGATGGCCTTGAAGATGGCGTCGGCGGCCAGTTCGAAGTGCTCGCC
GGTGTCGCCCAGGCGACCGTTCTCCAGGCGCGTGCGGGCGAAGCGCATGCCGCGCACCCGGCCTTGCTCGTC
AAGCAGTACCCGTTCCGGTCGGGCCCAGGTCAGCAGGCGCACCTGGCTGGCCTTGGCGATCTCCTGCTCGTG
GCCGGTGGCGCCCATTTCCTCGAAGCCACGGCGGTAGACCAGGTTGACGTCGCGGGCGCCGAGCCGGCTCAT
CTGCACCGCCATGTCGATGGCGGTGTTGCCGGCGCCGATGACGATGCAACGGTCGGCGACGGGCAGGTCGAG
CAGGTCGTCGCTCTGCCGCAGCTCGCGGATGTAGTCGGTGGCGGCGAGCAGGCCGGGGGCGTCCTCGTCTTC
CAGGCCGAGGCGCTTGCTGGCGGCCAGGCCGATGCCGAGGAACACCGCGTCGTACTCGTCGTGCAGGGCGCC
GAGCGCCAGGTTGTCGCCGAGACGCTGGCCGTGGCGCAGTTCGATACCGCCGATCTGCAGGAGGAATTCCAC
TTCGCGCCGGGCGAAGTCGTCCACCAGCTTGTAGCGGGCGATGCCGTACTCGTTGAGGCCGCCGACCTTGGC
GCGGGCCTCGAAGAGCACCACGTCGTGGCCGTGCATGGCCAGGCGGTGGGCGCAGGACAGCCCGGCCGGCCC
GGCGCCGACCACGGCGATGCGCTTGCCGGTGGCCGGCGAGCGCTTGAACGGATGTTCGCCGAAGCCGGCGTG
GTCGAGGGCGTAGCGTTGCAACTGGCCGATCAGCACCGGTGCGCATTCCTGGGCGTTGTTGCGTACGCAGGC
CCGCTGGCAGAGGATTTCCGTGGGGCAGACGCGGGCGCAGCTGCCGCCGAGGATGTTCGCCGAGAGGATCTT
CTGCGCCGCGCCCTGGACATTCTCCTGGGCGATGCTGCGGATGAACCCGGGGATGTCGATCTCGGTCGGGCA
GGCGTTGACGCAGGGCGCGTCGTAGCAGTACAGGCAGCGGGCGCTTTCCAGGGCGGCCTGGCGGGCGTTGAG
CGGCGGCGCGAGGTCGGCGAAGCGCTCGGCGAGCGTGTCCGCGCCGGCGTCCGGACGGGGGAGGTGGTTCAG
GGAATCGATCACGGTTGTAGCCTCTCTTCTGGTTTCTTCTCGGGGCAGTCAACGGCAATACGGCACCGTCCG
GCCTCTACGGGCCGGTCCGGTATTGCGGGAAGGATCAGCGCTCGACGGCGACCGGGCGCTGGCGTTCGGCGC
GGCGGCCGAGCACTTCGTACACCGACGGGTAGGCCGGGCGCTCCACGTAGCGTCCGGCGCCGGGTTCGGCGC
GCAGGTCGCCGGCGGCCCAGAGCAGCTTGCCCTGGCTGA