ViewGene

Locus Name:
GeneID:
Location:

GeneID: 7124

TrivialName: PA14_05170

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_05170

PAO1 Ortholog Locus:

Sequence Length: 1440

Protein Length: 479

Start: 450951

Stop: 452390

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAA25961.1| (M55524) ORF 5 [Pseudomonas aeruginosa] Identities = 473/479 (98%), Positives = 474/479 (98%)

Sequence:

GTGCGCCTCGCGCACCGCGGCGGCGGGCTTGGTCTTGCTCACGGCGAGCAGGCCGACCGTGGCCGGATCGCG
CCCCGCAGCTTGCGCTGCCTCACGGATGCGTGCGGCAACCTTTGCAATATTCTCTGCTATCGTGGACATTAC
CTGCGCCCTATGGAAGTGCGGTCGGCGTCGGCTAGACGCCCTCGAAACCGCCGGCCTCGATGGCCATCTTCC
TGTTCCAGTGTCGAGGTTCCGCGTCTGGCGCAGGACACCACGCGTGTCCTGGAAGCACCCTGGTTCATCCGG
TGTTTTCCTTGTCCGAGACGGCGGCTTTGGCGGCATTCTACCTGCTTGCTTGTAATTGGGGAGTCCCATGGA
TATTACCGAGCTGCTCGCCTTCAGTGCCAAACAGGGCGCTTCGGACCTGCACCTCTCCGCCGGCCTGCCGCC
CATGATCCGGGTGGATGGCGATGTACGCCGGATCAACCTGCCACCGCTGGAACACAAGCAGGTGCATGCGCT
GATCTACGACATCATGAACGACAAGCAGCGCAAGGACTTCGAGGAATTCCTCGAGACCGACTTCTCCTTCGA
GGTGCCGGGCGTCGCGCGTTTCCGGGTCAACGCCTTCAACCAGAACCGTGGCGCCGGCGCGGTATTCCGGAC
CATTCCCTCCAAGGTACTGACCATGGAGGAGCTTGGCATGGGAGAAGTGTTCAAACGTGTTTCAGACGTCCC
GCGCGGGCTGGTACTGGTCACCGGGCCGACCGGTTCGGGCAAGTCCACCACCCTGGCGGCGATGCTCGACTA
CCTGAACAACACCAAGTACCACCACATCCTCACCATCGAGGACCCGATCGAATTCGTCCACGAATCGAAGAA
GTGCCTGGTCAACCAGCGCGAGGTGCATCGCGACACCCTCGGCTTCAGCGAAGCGCTGCGCTCGGCGCTGCG
GGAGGACCCGGACATCATCCTGGTCGGCGAGATGCGCGACCTGGAAACCATCCGCCTGGCCCTGACCGCGGC
GGAGACCGGCCACCTGGTATTCGGCACCCTGCACACCACCTCGGCGGCGAAGACCATCGACCGGGTGGTCGA
CGTGTTCCCGGCCGAGGAAAAGGCCATGGTTCGCTCGATGCTCTCCGAGTCGCTGCAATCGGTGATCTCGCA
GACCCTGATCAAGAAGATCGGCGGCGGCCGGGTGGCGGCCCACGAGATCATGATCGGCACCCCGGCGATCCG
CAACCTGATCCGCGAGGACAAGGTCGCGCAGATGTATTCGGCGATCCAGACCGGCGGCTCGCTGGGCATGCA
GACCCTCGACATGTGCCTCAAGGGCCTGGTCGCCAAGGGCCTGATCAGCCGCGAGAATGCCCGCGAGAAGGC
GAAGATCCCGGAAAACTTCTGATCCTGGCGCCGATCCGCCGCGCTTCGCCCGAATCCCGGAACTGCGTCTAG

Translation:

MRLAHRGGGLGLAHGEQADRGRIAPRSLRCLTDACGNLCNILCYRGHYLRPMEVRSASARRPRNRRPRWPSS
CSSVEVPRLAQDTTRVLEAPWFIRCFPCPRRRLWRHSTCLLVIGESHGYYRAARLQCQTGRFGPAPLRRPAA
HDPGGWRCTPDQPATAGTQAGACADLRHHERQAAQGLRGIPRDRLLLRGAGRRAFPGQRLQPEPWRRRGIPD
HSLQGTDHGGAWHGRSVQTCFRRPARAGTGHRADRFGQVHHPGGDARLPEQHQVPPHPHHRGPDRIRPRIEE
VPGQPARGASRHPRLQRSAALGAAGGPGHHPGRRDARPGNHPPGPDRGGDRPPGIRHPAHHLGGEDHRPGGR
RVPGRGKGHGSLDALRVAAIGDLADPDQEDRRRPGGGPRDHDRHPGDPQPDPRGQGRADVFGDPDRRLAGHA
DPRHVPQGPGRQGPDQPRECPREGEDPGKLLILAPIRRASPESRNCV*

AnnotationID:7124 GeneID:7124

AnnotatorUID: diggins

Modification Date/Time: 2005-03-25 07:07:26

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16850

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:31320

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:7124

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

203116 gb|AAA25961.1| (M55524) ORF 5 [Pseudomonas aeruginosa] 525 90.28 90.28 46 2656.0

GC ORFID: `50126`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `6252293`	Stop: `6253732`
Length: `1440`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCGCCTCGCGCACCGCGGCGGCGGGCTTGGTCTTGCTCACGGCGAGCAGGCCGACCGTGGCCGGATCGCG CCCCGCAGCTTGCGCTGCCTCACGGATGCGTGCGGCAACCTTTGCAATATTCTCTGCTATCGTGGACATTAC CTGCGCCCTATGGAAGTGCGGTCGGCGTCGGCTAGACGCCCTCGAAACCGCCGGCCTCGATGGCCATCTTCC TGTTCCAGTGTCGAGGTTCCGCGTCTGGCGCAGGACACCACGCGTGTCCTGGAAGCACCCTGGTTCATCCGG TGTTTTCCTTGTCCGAGACGGCGGCTTTGGCGGCATTCTACCTGCTTGCTTGTAATTGGGGAGTCCCATGGA TATTACCGAGCTGCTCGCCTTCAGTGCCAAACAGGGCGCTTCGGACCTGCACCTCTCCGCCGGCCTGCCGCC CATGATCCGGGTGGATGGCGATGTACGCCGGATCAACCTGCCACCGCTGGAACACAAGCAGGTGCATGCGCT GATCTACGACATCATGAACGACAAGCAGCGCAAGGACTTCGAGGAATTCCTCGAGACCGACTTCTCCTTCGA GGTGCCGGGCGTCGCGCGTTTCCGGGTCAACGCCTTCAACCAGAACCGTGGCGCCGGCGCGGTATTCCGGAC CATTCCCTCCAAGGTACTGACCATGGAGGAGCTTGGCATGGGAGAAGTGTTCAAACGTGTTTCAGACGTCCC GCGCGGGCTGGTACTGGTCACCGGGCCGACCGGTTCGGGCAAGTCCACCACCCTGGCGGCGATGCTCGACTA CCTGAACAACACCAAGTACCACCACATCCTCACCATCGAGGACCCGATCGAATTCGTCCACGAATCGAAGAA GTGCCTGGTCAACCAGCGCGAGGTGCATCGCGACACCCTCGGCTTCAGCGAAGCGCTGCGCTCGGCGCTGCG GGAGGACCCGGACATCATCCTGGTCGGCGAGATGCGCGACCTGGAAACCATCCGCCTGGCCCTGACCGCGGC GGAGACCGGCCACCTGGTATTCGGCACCCTGCACACCACCTCGGCGGCGAAGACCATCGACCGGGTGGTCGA CGTGTTCCCGGCCGAGGAAAAGGCCATGGTTCGCTCGATGCTCTCCGAGTCGCTGCAATCGGTGATCTCGCA GACCCTGATCAAGAAGATCGGCGGCGGCCGGGTGGCGGCCCACGAGATCATGATCGGCACCCCGGCGATCCG CAACCTGATCCGCGAGGACAAGGTCGCGCAGATGTATTCGGCGATCCAGACCGGCGGCTCGCTGGGCATGCA GACCCTCGACATGTGCCTCAAGGGCCTGGTCGCCAAGGGCCTGATCAGCCGCGAGAATGCCCGCGAGAAGGC GAAGATCCCGGAAAACTTCTGATCCTGGCGCCGATCCGCCGCGCTTCGCCCGAATCCCGGAACTGCGTCTAG