ViewGene
Locus Name:
GeneID:
Location:

GeneID:7101
TrivialName: PA14_04260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04260
PAO1 Ortholog Locus:
Sequence Length:1101
Protein Length:366
Start: 380313
Stop: 381413
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAB51502.1| (AP003005) unknown protein [Mesorhizobium loti]
Identities = 63/212 (29%), Positives = 87/212 (41%), Gaps = 13/212 (6%)
Sequence:
GTGCGGGCAGCGTGCGCCGTCGCGGTTCTGCTGGCGCACGCGGAAGCCCGGCTGGCCGGCCACGTTCAGGTG
GTAGACGGTATCGGTGCCGACATAGACGACGTTTTCCAGCACGCCTTCCAACTGGCCGTCGGCGGCCAGTTC
GGTGCGCTCCGGGCGGATCGCCAGGGTCACCGCGCCGCTGCCCGGGGTCGTCGCGGCCAGCCGCTGGCCGTC
CGCCAGGCGCACGCCGTCGGCGTCGGCCTGGCCCTCGAGGAAGTTGGTTTCGCCGATGAAGTCGGCGACCGC
CCGGTTCAGCGGCGCCTCGTAGATGTCGCTGGGTGTGCCGACCTGCAGCACCTTGCCCTTGCTCATCACCGC
GATGCGGTCGGACATGGTCAGCGCTTCCTCCTGGTCATGGGTGACGAAGATGAAGGTGATCCCGGTCTCGTG
CTGCAGGCGCTTCAGCTCGATCTGCATTTCCTTGCGCAGCTTCAGGTCCAGCGCCGACAGCGACTCGTCGAG
CAGCAGCACCTTGGGCCGGCTGGCCAGCGCGCGGGCCAGGGCGATGCGTTGCTGCTGGCCACCGGACAACTG
GTCGGCGCGGCGCTTGCCGACCTCCGGCAGCTTCACCAGCTCGAGCATGCGGCTCACGGTGGCGTCGATCTC
GCTGCGCGGGCGGCCCTGCATCTCCAGGCCGAAGCCGATGTTCTCGGCGACGCTCATGTGCGGGAACAGCGC
ATAACTCTGGAACACCGTGTTGACCGGGCGGCGGAACGGCGGCAGGCCTTCCATGCGTTCGCCATAGAGGCG
GATGCTGCCGGAGCTGGGTTGTTCGAAACCGGCGATGAGGCGGAGGAGGGTGGTCTTGCCGCAGCCGGAAGG
GCCGAGGAGGGTGAAGAATTCGTTGGCGTGGATATCCAGGGACACATCGTCAAGGGCCTTCAGGCCTTGGCC
GGGGGTACCGAATTCCATGCAGATCCGCTCGATGGCTATCGCGCTGGTCATGCTGAATTCCATGCAGTCAAG
CAGTTGTTATTGTTGAGGTTTTGCGGTTTCTGGGGCCCGCTTCACCTGCTGCGGTTCGATAATGACCGGGGC
GCCGCGGGCGCAGAACGATAG
Translation:
MRAACAVAVLLAHAEARLAGHVQVVDGIGADIDDVFQHAFQLAVGGQFGALRADRQGHRAAARGRRGQPLAV
RQAHAVGVGLALEEVGFADEVGDRPVQRRLVDVAGCADLQHLALAHHRDAVGHGQRFLLVMGDEDEGDPGLV
LQALQLDLHFLAQLQVQRRQRLVEQQHLGPAGQRAGQGDALLLATGQLVGAALADLRQLHQLEHAAHGGVDL
AARAALHLQAEADVLGDAHVREQRITLEHRVDRAAERRQAFHAFAIEADAAGAGLFETGDEAEEGGLAAAGR
AEEGEEFVGVDIQGHIVKGLQALAGGTEFHADPLDGYRAGHAEFHAVKQLLLLRFCGFWGPLHLLRFDNDRG
AAGAER*
AnnotationID:7101GeneID:7101
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 14:02:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16829




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31274




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 50103How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6181655Stop: 6182755

          
Length: 1101


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCGGGCAGCGTGCGCCGTCGCGGTTCTGCTGGCGCACGCGGAAGCCCGGCTGGCCGGCCACGTTCAGGTG 
GTAGACGGTATCGGTGCCGACATAGACGACGTTTTCCAGCACGCCTTCCAACTGGCCGTCGGCGGCCAGTTC 
GGTGCGCTCCGGGCGGATCGCCAGGGTCACCGCGCCGCTGCCCGGGGTCGTCGCGGCCAGCCGCTGGCCGTC 
CGCCAGGCGCACGCCGTCGGCGTCGGCCTGGCCCTCGAGGAAGTTGGTTTCGCCGATGAAGTCGGCGACCGC 
CCGGTTCAGCGGCGCCTCGTAGATGTCGCTGGGTGTGCCGACCTGCAGCACCTTGCCCTTGCTCATCACCGC 
GATGCGGTCGGACATGGTCAGCGCTTCCTCCTGGTCATGGGTGACGAAGATGAAGGTGATCCCGGTCTCGTG 
CTGCAGGCGCTTCAGCTCGATCTGCATTTCCTTGCGCAGCTTCAGGTCCAGCGCCGACAGCGACTCGTCGAG 
CAGCAGCACCTTGGGCCGGCTGGCCAGCGCGCGGGCCAGGGCGATGCGTTGCTGCTGGCCACCGGACAACTG 
GTCGGCGCGGCGCTTGCCGACCTCCGGCAGCTTCACCAGCTCGAGCATGCGGCTCACGGTGGCGTCGATCTC 
GCTGCGCGGGCGGCCCTGCATCTCCAGGCCGAAGCCGATGTTCTCGGCGACGCTCATGTGCGGGAACAGCGC 
ATAACTCTGGAACACCGTGTTGACCGGGCGGCGGAACGGCGGCAGGCCTTCCATGCGTTCGCCATAGAGGCG 
GATGCTGCCGGAGCTGGGTTGTTCGAAACCGGCGATGAGGCGGAGGAGGGTGGTCTTGCCGCAGCCGGAAGG 
GCCGAGGAGGGTGAAGAATTCGTTGGCGTGGATATCCAGGGACACATCGTCAAGGGCCTTCAGGCCTTGGCC 
GGGGGTACCGAATTCCATGCAGATCCGCTCGATGGCTATCGCGCTGGTCATGCTGAATTCCATGCAGTCAAG 
CAGTTGTTATTGTTGAGGTTTTGCGGTTTCTGGGGCCCGCTTCACCTGCTGCGGTTCGATAATGACCGGGGC 
GCCGCGGGCGCAGAACGATAG