ViewGene

Locus Name:
GeneID:
Location:

GeneID: 7091

TrivialName: PA14_03850

AnnotatorUID: danlee

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_03850

PAO1 Ortholog Locus:

Sequence Length: 297

Protein Length: 98

Start: 346183

Stop: 345887

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Replaced by GeneID 7365 (PA14_03855), full-length gene corresponding to PAO1 PA0295

Sequence:

GTGCTGTTCATCGACAACCTGGTGATCCCGGCCGGCGCCCAGCATCCACGCGAGGCGCACCGTTTCATCGAC
TACCTGATGCAACCGAAGATCGCCGCACAGATCACCGCCGCCACCCTCTACCCCAGCGGCAACGCCGACGCC
GCCGGCTTCCTCGATCCCGCCCTGCGCCAGCAACCCGGCCTGTATCCGGACCGCGACACCAGCCGCCGCCTG
TTCGCCCTGGAAACGCCGCCGGAAAAACTCCGGCCGGTGGTCGACGAGATCTGGAAGGCCTTCCGCGGCGCC
AGCCACTGA

Translation:

MLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRL
FALETPPEKLRPVVDEIWKAFRGASH*

AnnotationID:7091 GeneID:7091

AnnotatorUID: danlee

Modification Date/Time: 2005-11-23 15:03:21

Gene Name:

Confidence Code: 3

GeneProduct: putative periplasmic polyamine binding protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: ()

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: INACTIVE

Pathway:

Homology:

>gb|AAL41626.1| (AE009029) ABC transporter, substrate binding protein [putrescine]
           [Agrobacterium tumefaciens str. C58 (U. Washington)]
          Length = 365

 Score = 75.9 bits (185), Expect = 4e-14
 Identities = 31/89 (34%), Positives = 59/89 (66%)

Structural Features:

Genomic Context:

Comment:

Replaced by GeneID 7365 (PA14_03855), full-length gene corresponding to PAO1 PA0295

ReferenceID:16818

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:31255

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33632

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 7091_cdd.html

URL:

Homologs By Global Alignment

Gene ID:7091

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

8069 PA0295_tr translation of PA0295 353 27.76 27.76 255 513.0

203112 gb|AAG03684.1|AE004467_6 (AE004467) probable periplasmic polyamine binding protein [Pseudomonas aeruginosa PAO1] 353 27.76 27.76 255 513.0

GC ORFID: `50093`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `6147524`	Stop: `6147228`
Length: `297`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0295 translation of PA0295`	Homolog Bit Score `202.0`
Other Homologs: `t_PA0295 translation of PA0295 (BLASTP 202)`
GC ORF Sequence
`GTGCTGTTCATCGACAACCTGGTGATCCCGGCCGGCGCCCAGCATCCACGCGAGGCGCACCGTTTCATCGAC TACCTGATGCAACCGAAGATCGCCGCACAGATCACCGCCGCCACCCTCTACCCCAGCGGCAACGCCGACGCC GCCGGCTTCCTCGATCCCGCCCTGCGCCAGCAACCCGGCCTGTATCCGGACCGCGACACCAGCCGCCGCCTG TTCGCCCTGGAAACGCCGCCGGAAAAACTCCGGCCGGTGGTCGACGAGATCTGGAAGGCCTTCCGCGGCGCC AGCCACTGA`