ViewGene

Locus Name:
GeneID:
Location:

GeneID: 7085

TrivialName: PA14_03640

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_03640

PAO1 Ortholog Locus:

Sequence Length: 1569

Protein Length: 522

Start: 328969

Stop: 327401

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 165/556 (29%), Positives = 209/556 (37%), Gaps = 91/556 (16%)

Sequence:

GTGCGGCAAGACCACCCTGCTGCGGATCATCGCCGGGCTGGAAACCCCGGACGCCGGCAACATCGTGTTCCA
TGGCGAGGACGTCTCGCAGCACGACGTGCGCGACCGCAACGTCGGCTTCGTCTTCCAGCACTACGCGCTGTT
CCGCCACATGACGGTGTTCGACAACGTCGCCTTCGGCCTGCGCATGAAGCCCAAGGGCGAGCGGCCGGGCGA
GTCCGCGATCAAGGCCAAGGTCCACGAGCTGCTCAACATGGTGCAGCTCGACTGGCTCGCCGACCGCTATCC
AGAGCAACTCTCCGGCGGCCAGCGGCAGCGTATCGCCCTGGCCCGCGCGCTGGCGGTGGAGCCGAAGATCCT
GCTCCTCGACGAACCCTTCGGCGCCCTCGACGCCAAGGTGCGCAAGGAGCTGCGCCGCTGGCTGGCGCGCCT
GCACGAGGAGATCAACCTGACCTCGGTGTTCGTCACCCACGACCAGGAAGAGGCGATGGAAGTGGCCGACCG
CATCGTGGTGATGAACAAAGGCGTGATCGAGCAGATCGGCTCGCCCGGCGAGGTCTACGAGAACCCGGCCAG
CGATTTCGTCTACCACTTCCTCGGCGACTCCAACCGCCTGCAACTGGGCAACGACCAGCACCTGCTGTTCCG
CCCCCACGAAGTGTCGCTGTCGCGTTCCGCGGTGGCCGAGCACCGCGCCGCCGAGGTCCGCGACATCCGTCC
GCTGGGGGCGATCACCCGGGTAACGCTGAAGGTCGACGGCCAGGACGAACTGATCGAAGCCGAAGTGGTGAA
GGACCACGACAGCCTGGCCGGCCTGGCCCGCGGCGAGACCCTCTACTTCAAGCCGAAGGCCTTCCAGCCGGT
GGCCAATCTCTGATCCCCGGCGGGTTCAGCCCGCCGTGCGTTCCGCCAGGCCGCGCAGTCCCGCGCGGCCCT
TCGGCGACACCTGCAACGCCCGCGAGCCGTCCTGCGGCCGCAACCAGCCCTGGCGCAGACAGGCCTCCAGCA
ACGCCGCCCCCAGCGCGCCGCCGAGGTGCGGCTTGCGTTCGCTCCAGTCGGGGCAGGCGCAGGCGAACTGCC
GACGGCGGCGGCGGACCTCCGCCAGGTCGATCCCCAACCCGGCCAGCCCGGCCTCGCCGGTCGCGCTCAGGC
GCAGCGTCCTGCCCTCCTGCTCGATCCAGCCGGCATCCAGCATCCGTGCGAACACACCGACCGCGAGTTCGC
CGGCCAGGTGGTCGTAGCAGGTCCGCGCCTCGCGCAACGCCGACGGCGTGCCGTGGCTCGGCGGCAGGCTGC
GCCGCTGCGGCTGCAGGGCCAGGGAGGCGCTGGCCAGCGCTTCCACCGCCTGCCCCACTTCCGGCCCGGCCA
GGCGATAGAAGCGATTGCGCCCGCGCGCCTCCAGGCTCAGCACGCCGCCCTCGACCAGCCGTCCCAGGTGGC
CGCTGGCGGAGGACGGCGAAACGCCTGCCAGCAGCGCCAGCTCGCTGGCCGGGCGGGCGCTGCCATCCATCA
GTGCCCAGATCATCTGCGCGCGACCGGGATCGGCGAGCAGCGCCGCCAGCGAACTGA

Translation:

MRQDHPAADHRRAGNPGRRQHRVPWRGRLAARRARPQRRLRLPALRAVPPHDGVRQRRLRPAHEAQGRAAGR
VRDQGQGPRAAQHGAARLARRPLSRATLRRPAAAYRPGPRAGGGAEDPAPRRTLRRPRRQGAQGAAPLAGAP
ARGDQPDLGVRHPRPGRGDGSGRPHRGDEQRRDRADRLARRGLREPGQRFRLPLPRRLQPPATGQRPAPAVP
PPRSVAVAFRGGRAPRRRGPRHPSAGGDHPGNAEGRRPGRTDRSRSGEGPRQPGRPGPRRDPLLQAEGLPAG
GQSLIPGGFSPPCVPPGRAVPRGPSATPATPASRPAAATSPGADRPPATPPPARRRGAACVRSSRGRRRRTA
DGGGGPPPGRSPTRPARPRRSRSGAASCPPARSSRHPASVRTHRPRVRRPGGRSRSAPRATPTACRGSAAGC
AAAAAGPGRRWPALPPPAPLPARPGDRSDCARAPPGSARRPRPAVPGGRWRRTAKRLPAAPARWPGGRCHPS
VPRSSARDRDRRAAPPAN*

AnnotationID:7085 GeneID:7085

AnnotatorUID: diggins

Modification Date/Time: 2004-08-04 11:11:37

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16810

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:31243

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33620

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 7085_cdd.html

URL:

GC ORFID: `50087`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `6130310`	Stop: `6128742`
Length: `1569`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCGGCAAGACCACCCTGCTGCGGATCATCGCCGGGCTGGAAACCCCGGACGCCGGCAACATCGTGTTCCA TGGCGAGGACGTCTCGCAGCACGACGTGCGCGACCGCAACGTCGGCTTCGTCTTCCAGCACTACGCGCTGTT CCGCCACATGACGGTGTTCGACAACGTCGCCTTCGGCCTGCGCATGAAGCCCAAGGGCGAGCGGCCGGGCGA GTCCGCGATCAAGGCCAAGGTCCACGAGCTGCTCAACATGGTGCAGCTCGACTGGCTCGCCGACCGCTATCC AGAGCAACTCTCCGGCGGCCAGCGGCAGCGTATCGCCCTGGCCCGCGCGCTGGCGGTGGAGCCGAAGATCCT GCTCCTCGACGAACCCTTCGGCGCCCTCGACGCCAAGGTGCGCAAGGAGCTGCGCCGCTGGCTGGCGCGCCT GCACGAGGAGATCAACCTGACCTCGGTGTTCGTCACCCACGACCAGGAAGAGGCGATGGAAGTGGCCGACCG CATCGTGGTGATGAACAAAGGCGTGATCGAGCAGATCGGCTCGCCCGGCGAGGTCTACGAGAACCCGGCCAG CGATTTCGTCTACCACTTCCTCGGCGACTCCAACCGCCTGCAACTGGGCAACGACCAGCACCTGCTGTTCCG CCCCCACGAAGTGTCGCTGTCGCGTTCCGCGGTGGCCGAGCACCGCGCCGCCGAGGTCCGCGACATCCGTCC GCTGGGGGCGATCACCCGGGTAACGCTGAAGGTCGACGGCCAGGACGAACTGATCGAAGCCGAAGTGGTGAA GGACCACGACAGCCTGGCCGGCCTGGCCCGCGGCGAGACCCTCTACTTCAAGCCGAAGGCCTTCCAGCCGGT GGCCAATCTCTGATCCCCGGCGGGTTCAGCCCGCCGTGCGTTCCGCCAGGCCGCGCAGTCCCGCGCGGCCCT TCGGCGACACCTGCAACGCCCGCGAGCCGTCCTGCGGCCGCAACCAGCCCTGGCGCAGACAGGCCTCCAGCA ACGCCGCCCCCAGCGCGCCGCCGAGGTGCGGCTTGCGTTCGCTCCAGTCGGGGCAGGCGCAGGCGAACTGCC GACGGCGGCGGCGGACCTCCGCCAGGTCGATCCCCAACCCGGCCAGCCCGGCCTCGCCGGTCGCGCTCAGGC GCAGCGTCCTGCCCTCCTGCTCGATCCAGCCGGCATCCAGCATCCGTGCGAACACACCGACCGCGAGTTCGC CGGCCAGGTGGTCGTAGCAGGTCCGCGCCTCGCGCAACGCCGACGGCGTGCCGTGGCTCGGCGGCAGGCTGC GCCGCTGCGGCTGCAGGGCCAGGGAGGCGCTGGCCAGCGCTTCCACCGCCTGCCCCACTTCCGGCCCGGCCA GGCGATAGAAGCGATTGCGCCCGCGCGCCTCCAGGCTCAGCACGCCGCCCTCGACCAGCCGTCCCAGGTGGC CGCTGGCGGAGGACGGCGAAACGCCTGCCAGCAGCGCCAGCTCGCTGGCCGGGCGGGCGCTGCCATCCATCA GTGCCCAGATCATCTGCGCGCGACCGGGATCGGCGAGCAGCGCCGCCAGCGAACTGA