ViewGene

Locus Name:
GeneID:
Location:

GeneID:7081
TrivialName: PA14_03500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03500
PAO1 Ortholog Locus:
Sequence Length:1839
Protein Length:612
Start: 322014
Stop: 320176
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC45786.1| (AP005936) blr0521 [Bradyrhizobium japonicum USDA 110]
Identities = 93/323 (28%), Positives = 109/323 (33%), Gaps = 40/323 (12%)
Sequence:
ATGGCGCTCCCGACGCCGTCAGGACGCCCCGATGCTGATCGCCAACGGCCTGCGCAAGGTCGACATGCAGGA
CCTGCTGGTCTTCCTCCAGGTCCACCAACGACAGAACCTCGTCGAGGTCGCCGAACAGCTGAACCTCAGTCC
GTCGACGGTCAGCTACTGCCTGAAGAAGCTGCGCCAGGCCTTCGACGACGAGCTGTTCATCGCCACCCGCGG
CGGCATGCAGCCGACCCACAAGAGTCGCGCCATGCTGCCCCATGTGGAGGAAATGCTCGCCCGCATCAACGC
CTGTCACGCCGCCCAGGGCAGCTTCGACCCGCGTGGCGAGCCGCGTACCTTTACCCTCTGCGCGCCGGAATA
CGTCGAGCTGCTGATCCTTCCGGCACTCCTGCGACGGCTCGCCGCCAACGGCCCGAGGATCGGCCTGGACAT
CCGCCGCCTGGGTCCCGAACTGCCCACCGAAGCATTGCTCGACGGCCAGGTCGACCTGGTCTTCGACTTCGG
TCCCGAGTACCACCGACCGGCACCGGAGCTACAGGCGCTCGCCCTGTTCAGCGACGAACTGCTCTGCGTGCA
GGATCGTGCCCAGCCGCGCCACGAGCGCCTGGAACTGGACGAGTTCTGCCGGCGCCGCTTCGTCTTCCCGAC
CCCGCTCGACGCCAGCAACGCCAACCTGGTGGACACGTGGCTGCGACGCCAGGGCCGCAGCCGCGAAGTCGC
CGCGCGCGCCAACAGCTACGTCGCCGCCCTGCAACTGCTGTCGGGCAGCGACTTCGTGCTGATGCTGCCGCG
ACGTATCCACGCGCTGCTCGACGATGGCCGCCATCGCGCCTGCCTCGCACCGTCAGGGCTGCCGCCGTTCGC
CCTGCACCTGTCATGGAGCCGCGCCGCCGACCAGGACCCGGCGAACCTCTGGCTGCGCGAACAGGTGCTGAT
CGTCTGCGCCGAGCTGGGTTTGCTCTAGCCTGCGTCATCCTGCACTTCGAGGCTCGCCGCCAGGGAGCGCCA
GAGCACTTCGGCGAATACCTGCTGGATGCCGCCGGCCAGGTAGTCGAACATCTGCTGCGCTTCCCGCCACTG
GCTGCACACCAGCCAGAGATCCGGCTCGAGGGCGTCCCTGCGCACCTGGTACTCCAGGCAACCCGGCGCCTC
CAGCCCCGGTTCGACCAGTTGTTGCAGGCGCAGGCCAAGCCGTTCCGACTGACCGTTGCGCGCGCGAATACG
GATGACCTGGCTGGCGCTCATGACGGACGCTCCTCCGGACGAACGAGCGACGCCTCAGTGGGCGCCGCGCTC
CAGTGGCTTGAGGATCGGGTCGCCCTCCTTGAGCAACTCCCAGACCAGCAACTTGGCCGGCTTCATCGGATC
GGGATTGCGTGCCAGCAGGTGCGGCACGTTCGCCGGCTCGTACCAGCTCTGGCCCACCGTGTAGGTTTCCAC
CGGGCCGCCTTCCAGTTGCGTCTGCACGGTGCCTTCGAGCACGTAGACGAACACCGAGCCGGGATGCACATG
GGGCGCGGAGACCTGGCCGGGCTTGAACGACACCGTCAGCATCAACCCACGATGGCCGGGAATCTCGGCCAG
GGCCTGGTCGCGCAAGGTTTCCACCTTCTCCGCAGCATGGGCGCTGGCCAGCGTCGGCAGCGCGGCGAGCAG
CAGGCAGGCGATCGATCGATTGGCCTTCATCGCCGCCCACCTCACTCCGGTTGCATGCCCATGCCGACGCCG
AAGCGGTTCCAGGCGTTGATGGCCGAGACCGCCAGGGTCAGTTCGGCGATCTCCTTGTCGTCGAAGTGCTCG
CGCAGTTCGTCGAGCAGGCCGTGCGGCAACGGACCCTGA
Translation:
MALPTPSGRPDADRQRPAQGRHAGPAGLPPGPPTTEPRRGRRTAEPQSVDGQLLPEEAAPGLRRRAVHRHPR
RHAADPQESRHAAPCGGNARPHQRLSRRPGQLRPAWRAAYLYPLRAGIRRAADPSGTPATARRQRPEDRPGH
PPPGSRTAHRSIARRPGRPGLRLRSRVPPTGTGATGARPVQRRTALRAGSCPAAPRAPGTGRVLPAPLRLPD
PARRQQRQPGGHVAATPGPQPRSRRARQQLRRRPATAVGQRLRADAAATYPRAARRWPPSRLPRTVRAAAVR
PAPVMEPRRRPGPGEPLAARTGADRLRRAGFALACVILHFEARRQGAPEHFGEYLLDAAGQVVEHLLRFPPL
AAHQPEIRLEGVPAHLVLQATRRLQPRFDQLLQAQAKPFRLTVARANTDDLAGAHDGRSSGRTSDASVGAAL
QWLEDRVALLEQLPDQQLGRLHRIGIACQQVRHVRRLVPALAHRVGFHRAAFQLRLHGAFEHVDEHRAGMHM
GRGDLAGLERHRQHQPTMAGNLGQGLVAQGFHLLRSMGAGQRRQRGEQQAGDRSIGLHRRPPHSGCMPMPTP
KRFQALMAETARVSSAISLSSKCSRSSSSRPCGNGP*
AnnotationID:7081GeneID:7081
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:13826
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:31235
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 50083How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 6123355Stop: 6121517
Length: 1839
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCGCTCCCGACGCCGTCAGGACGCCCCGATGCTGATCGCCAACGGCCTGCGCAAGGTCGACATGCAGGA
CCTGCTGGTCTTCCTCCAGGTCCACCAACGACAGAACCTCGTCGAGGTCGCCGAACAGCTGAACCTCAGTCC
GTCGACGGTCAGCTACTGCCTGAAGAAGCTGCGCCAGGCCTTCGACGACGAGCTGTTCATCGCCACCCGCGG
CGGCATGCAGCCGACCCACAAGAGTCGCGCCATGCTGCCCCATGTGGAGGAAATGCTCGCCCGCATCAACGC
CTGTCACGCCGCCCAGGGCAGCTTCGACCCGCGTGGCGAGCCGCGTACCTTTACCCTCTGCGCGCCGGAATA
CGTCGAGCTGCTGATCCTTCCGGCACTCCTGCGACGGCTCGCCGCCAACGGCCCGAGGATCGGCCTGGACAT
CCGCCGCCTGGGTCCCGAACTGCCCACCGAAGCATTGCTCGACGGCCAGGTCGACCTGGTCTTCGACTTCGG
TCCCGAGTACCACCGACCGGCACCGGAGCTACAGGCGCTCGCCCTGTTCAGCGACGAACTGCTCTGCGTGCA
GGATCGTGCCCAGCCGCGCCACGAGCGCCTGGAACTGGACGAGTTCTGCCGGCGCCGCTTCGTCTTCCCGAC
CCCGCTCGACGCCAGCAACGCCAACCTGGTGGACACGTGGCTGCGACGCCAGGGCCGCAGCCGCGAAGTCGC
CGCGCGCGCCAACAGCTACGTCGCCGCCCTGCAACTGCTGTCGGGCAGCGACTTCGTGCTGATGCTGCCGCG
ACGTATCCACGCGCTGCTCGACGATGGCCGCCATCGCGCCTGCCTCGCACCGTCAGGGCTGCCGCCGTTCGC
CCTGCACCTGTCATGGAGCCGCGCCGCCGACCAGGACCCGGCGAACCTCTGGCTGCGCGAACAGGTGCTGAT
CGTCTGCGCCGAGCTGGGTTTGCTCTAGCCTGCGTCATCCTGCACTTCGAGGCTCGCCGCCAGGGAGCGCCA
GAGCACTTCGGCGAATACCTGCTGGATGCCGCCGGCCAGGTAGTCGAACATCTGCTGCGCTTCCCGCCACTG
GCTGCACACCAGCCAGAGATCCGGCTCGAGGGCGTCCCTGCGCACCTGGTACTCCAGGCAACCCGGCGCCTC
CAGCCCCGGTTCGACCAGTTGTTGCAGGCGCAGGCCAAGCCGTTCCGACTGACCGTTGCGCGCGCGAATACG
GATGACCTGGCTGGCGCTCATGACGGACGCTCCTCCGGACGAACGAGCGACGCCTCAGTGGGCGCCGCGCTC
CAGTGGCTTGAGGATCGGGTCGCCCTCCTTGAGCAACTCCCAGACCAGCAACTTGGCCGGCTTCATCGGATC
GGGATTGCGTGCCAGCAGGTGCGGCACGTTCGCCGGCTCGTACCAGCTCTGGCCCACCGTGTAGGTTTCCAC
CGGGCCGCCTTCCAGTTGCGTCTGCACGGTGCCTTCGAGCACGTAGACGAACACCGAGCCGGGATGCACATG
GGGCGCGGAGACCTGGCCGGGCTTGAACGACACCGTCAGCATCAACCCACGATGGCCGGGAATCTCGGCCAG
GGCCTGGTCGCGCAAGGTTTCCACCTTCTCCGCAGCATGGGCGCTGGCCAGCGTCGGCAGCGCGGCGAGCAG
CAGGCAGGCGATCGATCGATTGGCCTTCATCGCCGCCCACCTCACTCCGGTTGCATGCCCATGCCGACGCCG
AAGCGGTTCCAGGCGTTGATGGCCGAGACCGCCAGGGTCAGTTCGGCGATCTCCTTGTCGTCGAAGTGCTCG
CGCAGTTCGTCGAGCAGGCCGTGCGGCAACGGACCCTGA