ViewGene

Locus Name:
GeneID:
Location:

GeneID: 7080

TrivialName: PA14_03460

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_03460

PAO1 Ortholog Locus:

Sequence Length: 2931

Protein Length: 976

Start: 319805

Stop: 316875

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 145/493 (29%), Positives = 170/493 (34%), Gaps = 78/493 (15%)

Sequence:

TTGGCTTCCACGAAGAGCCAATTACCAGAAATACCAGGTAGCCAATTTCGCCATGGAACTGCAACTGATCCT
CGACGGCCGCCACGACCTGGTCGGCCAGCTCTATCGCCAGCTGCGCGACGCGATCCTCCACGGTCGCCTGGC
CACCGGCGATCGCCTGCCAGCCACGCGCTACCTCGCCGAACGCCTGGAAGTGTCGCGCAAGACCGTCAGCGA
AGCCTACGAGCGCCTCACCAGCGAGGGCTTCCTCGAAGGCCGGGTCGGCAGCGGCACCTTCGTCGCCCGCGG
GCCCGCCGGGGAAGCGCCGCCGCAGCGCGCCGACGGTCCGTTGCGGCCGGCCGCGCGCTGGGCACGCATCGA
ACCGCAGTCCGGTCTGATGGACCAGCGAGCACCGCTCCGCTACAGCTTCGCCGGCGGCACGACCGACAAGCG
CCGCTTTCCCTTCGATACCTGGCGTACCTGCGTGCTCCAGGCGCTACGCCTGCAACAGCGCTCGCCGGCGTT
CTACAAGGAAACCGAAGGCGACCCCGAACTGCGCCTGGCGATCTCCCGCTACCTGGCGATCAACCGCGCCGT
GCAGTGCGACTGGAACGCCCTGATGGTCACCCAGGGCGCCCAGCAGGGACTCGACCTGCTGGCCCGGGTGAT
GCTCGACCCCGGCGACCTGGCGGTGGTCGAGGAACCCGGTTATCCGCCGGCCCGCGCCAGCCTGCTGGCCAC
CGGCGCCGAGGTACGCGGAGTGCCGGTGGACGCCGAGGGGCTGCGCGTCGACCTGCTGCCGGACAACGCCAA
GCTGGTCTACGTCACCCCGTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCCTCGAGCGGCGCCTGCAGTT
GCTGGACTGGGCGCAGCGCCACCGGGCGCTGATCATCGAGGACGACTACGACAGCGAGTACCGCTTCGACGG
GCGTTCGCTGGAGTCGCTGCGCAGCCTCGACCGGAACGGCCAGGTGGCCTACCTCGGGACCTTTTCCAAGAC
CCTCTTCCCCGAGCTGCGCCTCGGCTACCTGCTGCCGCCGGCGAGCCTGCGCGAAGCGGTGCTGGCGGCGCG
CAAGCTGGTCGACCGGCACAGCGAGACCTTGCAGCAACGCGCCCTCGCGCTGTTCATCCAGCGCGGCGACTT
CGCCCGCCATACGCGCCGCCTGCAACGCGAATACGCCCAGCGTCGCCGGCGCCTGCTGGAACGCCTGCACGG
CGACCTGAGCCCCTGGCTCGAAGCGCTGCCGGCGGTGGCCGGGATCCACCTCGCGGCGCGCTGTCGCGAACC
GCTGGATGTGCTGCGCATCGCCCGTCATTTGCGCCAGCAAGGCCTGGAGGTCGGCACCCTGCCGCCCTTCTA
CGCGGAAACCCCGGCACAGGCCGGCTTCCTCTTCGGCTTCGGCTGCATCGAACGGGACGACATCGACCCGGC
GTTGGACCTGTTGCGCGCCGAGCTGCGGCGCTAGGCGCGCTCCCGCCCATCCACGGCCGACAACTCGGCGGC
GTGCGTAGGAGCCGATCTCCCCGGCAAGAGGCTCGATTGCAACCGCGCCCATGCCCAGCGGCGCATGACGCG
CCGCGTTATCCGCCCTATGGGAGGCGCCGCCCCTTGCAAAGGCCCGGCGAGGACGGCTCAGGGCTGCAGCAG
TTTCGCCAGTCGTTCGCCGTCCAGGCCGAGCATGCGGGCAGCCTTGCTCTCGGCCAGTTGCTCCGCGTCGTC
CTCGGGCAGGCTGGCGGCCTGGGTCGCCAGGCTGAGGATCAGCTCTTCGCGGGAAAGCACGCCACCGAACTG
GTACGCCGCAGCGATCAGCCGGCGCAGCTCCAGCGGCAGCCGCCAACGCGCCCGCAGGGCCGAGCCGAAGCT
GGCGCCGAAACGCCCCAGCAGCTCGTCGAGCCGCGCCTCGTCCAGCGCGCCGCCGCCATCGCACCAATCCTG
CAATGTCCGCAGCAGCGCCAGGTCGCCCAGGCGATGCAGCAGCCCTGCGGTATAGCAGCGCTCGACGTCCGC
GCCGAGGGCGTCGGCCAGTTCCCAGGCGATGTCCGCGCAACGTTGCGAAAGATCCCAGAAGTGCATGGCGCG
CTCGGCCAGCAGCGGCTCGCCGAGCTGGATGGCCCGCTGCAGACTGAAACCGAGCACCAGGTTCAGGCTGTG
CCCGAGTCCCAGCCGCCGCAGGGCCTGGCCCAGGGTCTGGCAGGCCGGACCGACGTGCCGGGCGGCGCTGTT
GGCGGCGGCGATCAGGCCAGCGGTGATCTGCGGGTCGCGACCGAACTCATCCTCCAGCACGCGCAGCGGATG
CTCCTCGGCGCTCAGGCAACGATCGCTGGCGGCACGCACGTCGGCCAGCAACGGCGCCCCCTCCGCGGAGTC
GCGCGCGCGTTCGAGGAAAGCCTCCAGGTTCTCGCCCGCGTCCCGCTCCGGCAGCGGACAGGCGACCACTTC
GTCGCCCTTCAGCAACAACCCTCGCAGGCGTTGCATCAGGTTCTCGGCCTGGAACGGCTTCACCAGGTAGGC
GGTCGGCGCCAGTGCCACGGCGGCGCGCACGCTGGCCTGGTCGGCGCGGTCGCTGATCAGGATGAACGGCTG
CTCGGCGACCGAGCGGCGCAGGCGCGCTTCGCGCAGCAGCTCGAAGCCATCCACCTGCGGCAGGTTCAGCTC
GGCCAGGATCAACGCGAAGCGCCGGCGCCGGCAATGCGCCAGCGCTTCCCCGCCATCGCCGCAGAGGACCAG
CCGGGCATCGCAACGCACGCCGAGGACCAGTTGGCCAAGCAAGTCGCGACTCCAGGGGTCCGGGTCGGCAAT
CAGGATGACGGGGGCCTTTTTCGCGGCACTCATGGCGTTCCTCTTCGAACCTGGCGAACCGAGCGGGACGCA
CCAGGCATGACAGGCGGGCACGACACGGCCCGCGGGCACACAAGGGTATGA

Translation:

MASTKSQLPEIPGSQFRHGTATDPRRPPRPGRPALSPAARRDPPRSPGHRRSPASHALPRRTPGSVAQDRQR
SLRAPHQRGLPRRPGRQRHLRRPRARRGSAAAARRRSVAAGRALGTHRTAVRSDGPASTAPLQLRRRHDRQA
PLSLRYLAYLRAPGATPATALAGVLQGNRRRPRTAPGDLPLPGDQPRRAVRLERPDGHPGRPAGTRPAGPGD
ARPRRPGGGRGTRLSAGPRQPAGHRRRGTRSAGGRRGAARRPAAGQRQAGLRHPVAPVPAGHADEPRAAPAV
AGLGAAPPGADHRGRLRQRVPLRRAFAGVAAQPRPERPGGLPRDLFQDPLPRAAPRLPAAAGEPARSGAGGA
QAGRPAQRDLAATRPRAVHPARRLRPPYAPPATRIRPASPAPAGTPARRPEPLARSAAGGGRDPPRGALSRT
AGCAAHRPSFAPARPGGRHPAALLRGNPGTGRLPLRLRLHRTGRHRPGVGPVARRAAALGALPPIHGRQLGG
VRRSRSPRQEARLQPRPCPAAHDAPRYPPYGRRRPLQRPGEDGSGLQQFRQSFAVQAEHAGSLALGQLLRVV
LGQAGGLGRQAEDQLFAGKHATELVRRSDQPAQLQRQPPTRPQGRAEAGAETPQQLVEPRLVQRAAAIAPIL
QCPQQRQVAQAMQQPCGIAALDVRAEGVGQFPGDVRATLRKIPEVHGALGQQRLAELDGPLQTETEHQVQAV
PESQPPQGLAQGLAGRTDVPGGAVGGGDQASGDLRVATELILQHAQRMLLGAQATIAGGTHVGQQRRPLRGV
ARAFEESLQVLARVPLRQRTGDHFVALQQQPSQALHQVLGLERLHQVGGRRQCHGGAHAGLVGAVADQDERL
LGDRAAQARFAQQLEAIHLRQVQLGQDQREAPAPAMRQRFPAIAAEDQPGIATHAEDQLAKQVATPGVRVGN
QDDGGLFRGTHGVPLRTWRTERDAPGMTGGHDTARGHTRV*

AnnotationID:7080 GeneID:7080

AnnotatorUID: diggins

Modification Date/Time: 2004-08-03 13:01:36

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16807

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:31233

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33613

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 7080_cdd.html

URL:

GC ORFID: `50082`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `6121146`	Stop: `6118216`
Length: `2931`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGGCTTCCACGAAGAGCCAATTACCAGAAATACCAGGTAGCCAATTTCGCCATGGAACTGCAACTGATCCT CGACGGCCGCCACGACCTGGTCGGCCAGCTCTATCGCCAGCTGCGCGACGCGATCCTCCACGGTCGCCTGGC CACCGGCGATCGCCTGCCAGCCACGCGCTACCTCGCCGAACGCCTGGAAGTGTCGCGCAAGACCGTCAGCGA AGCCTACGAGCGCCTCACCAGCGAGGGCTTCCTCGAAGGCCGGGTCGGCAGCGGCACCTTCGTCGCCCGCGG GCCCGCCGGGGAAGCGCCGCCGCAGCGCGCCGACGGTCCGTTGCGGCCGGCCGCGCGCTGGGCACGCATCGA ACCGCAGTCCGGTCTGATGGACCAGCGAGCACCGCTCCGCTACAGCTTCGCCGGCGGCACGACCGACAAGCG CCGCTTTCCCTTCGATACCTGGCGTACCTGCGTGCTCCAGGCGCTACGCCTGCAACAGCGCTCGCCGGCGTT CTACAAGGAAACCGAAGGCGACCCCGAACTGCGCCTGGCGATCTCCCGCTACCTGGCGATCAACCGCGCCGT GCAGTGCGACTGGAACGCCCTGATGGTCACCCAGGGCGCCCAGCAGGGACTCGACCTGCTGGCCCGGGTGAT GCTCGACCCCGGCGACCTGGCGGTGGTCGAGGAACCCGGTTATCCGCCGGCCCGCGCCAGCCTGCTGGCCAC CGGCGCCGAGGTACGCGGAGTGCCGGTGGACGCCGAGGGGCTGCGCGTCGACCTGCTGCCGGACAACGCCAA GCTGGTCTACGTCACCCCGTCGCACCAGTTCCCGCTGGGCATGCCGATGAGCCTCGAGCGGCGCCTGCAGTT GCTGGACTGGGCGCAGCGCCACCGGGCGCTGATCATCGAGGACGACTACGACAGCGAGTACCGCTTCGACGG GCGTTCGCTGGAGTCGCTGCGCAGCCTCGACCGGAACGGCCAGGTGGCCTACCTCGGGACCTTTTCCAAGAC CCTCTTCCCCGAGCTGCGCCTCGGCTACCTGCTGCCGCCGGCGAGCCTGCGCGAAGCGGTGCTGGCGGCGCG CAAGCTGGTCGACCGGCACAGCGAGACCTTGCAGCAACGCGCCCTCGCGCTGTTCATCCAGCGCGGCGACTT CGCCCGCCATACGCGCCGCCTGCAACGCGAATACGCCCAGCGTCGCCGGCGCCTGCTGGAACGCCTGCACGG CGACCTGAGCCCCTGGCTCGAAGCGCTGCCGGCGGTGGCCGGGATCCACCTCGCGGCGCGCTGTCGCGAACC GCTGGATGTGCTGCGCATCGCCCGTCATTTGCGCCAGCAAGGCCTGGAGGTCGGCACCCTGCCGCCCTTCTA CGCGGAAACCCCGGCACAGGCCGGCTTCCTCTTCGGCTTCGGCTGCATCGAACGGGACGACATCGACCCGGC GTTGGACCTGTTGCGCGCCGAGCTGCGGCGCTAGGCGCGCTCCCGCCCATCCACGGCCGACAACTCGGCGGC GTGCGTAGGAGCCGATCTCCCCGGCAAGAGGCTCGATTGCAACCGCGCCCATGCCCAGCGGCGCATGACGCG CCGCGTTATCCGCCCTATGGGAGGCGCCGCCCCTTGCAAAGGCCCGGCGAGGACGGCTCAGGGCTGCAGCAG TTTCGCCAGTCGTTCGCCGTCCAGGCCGAGCATGCGGGCAGCCTTGCTCTCGGCCAGTTGCTCCGCGTCGTC CTCGGGCAGGCTGGCGGCCTGGGTCGCCAGGCTGAGGATCAGCTCTTCGCGGGAAAGCACGCCACCGAACTG GTACGCCGCAGCGATCAGCCGGCGCAGCTCCAGCGGCAGCCGCCAACGCGCCCGCAGGGCCGAGCCGAAGCT GGCGCCGAAACGCCCCAGCAGCTCGTCGAGCCGCGCCTCGTCCAGCGCGCCGCCGCCATCGCACCAATCCTG CAATGTCCGCAGCAGCGCCAGGTCGCCCAGGCGATGCAGCAGCCCTGCGGTATAGCAGCGCTCGACGTCCGC GCCGAGGGCGTCGGCCAGTTCCCAGGCGATGTCCGCGCAACGTTGCGAAAGATCCCAGAAGTGCATGGCGCG CTCGGCCAGCAGCGGCTCGCCGAGCTGGATGGCCCGCTGCAGACTGAAACCGAGCACCAGGTTCAGGCTGTG CCCGAGTCCCAGCCGCCGCAGGGCCTGGCCCAGGGTCTGGCAGGCCGGACCGACGTGCCGGGCGGCGCTGTT GGCGGCGGCGATCAGGCCAGCGGTGATCTGCGGGTCGCGACCGAACTCATCCTCCAGCACGCGCAGCGGATG CTCCTCGGCGCTCAGGCAACGATCGCTGGCGGCACGCACGTCGGCCAGCAACGGCGCCCCCTCCGCGGAGTC GCGCGCGCGTTCGAGGAAAGCCTCCAGGTTCTCGCCCGCGTCCCGCTCCGGCAGCGGACAGGCGACCACTTC GTCGCCCTTCAGCAACAACCCTCGCAGGCGTTGCATCAGGTTCTCGGCCTGGAACGGCTTCACCAGGTAGGC GGTCGGCGCCAGTGCCACGGCGGCGCGCACGCTGGCCTGGTCGGCGCGGTCGCTGATCAGGATGAACGGCTG CTCGGCGACCGAGCGGCGCAGGCGCGCTTCGCGCAGCAGCTCGAAGCCATCCACCTGCGGCAGGTTCAGCTC GGCCAGGATCAACGCGAAGCGCCGGCGCCGGCAATGCGCCAGCGCTTCCCCGCCATCGCCGCAGAGGACCAG CCGGGCATCGCAACGCACGCCGAGGACCAGTTGGCCAAGCAAGTCGCGACTCCAGGGGTCCGGGTCGGCAAT CAGGATGACGGGGGCCTTTTTCGCGGCACTCATGGCGTTCCTCTTCGAACCTGGCGAACCGAGCGGGACGCA CCAGGCATGACAGGCGGGCACGACACGGCCCGCGGGCACACAAGGGTATGA