ViewGene

Locus Name:
GeneID:
Location:

GeneID:7064
TrivialName: PA14_03230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03230
PAO1 Ortholog Locus:
Sequence Length:3084
Protein Length:1027
Start: 285438
Stop: 288521
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15]
Identities = 117/445 (26%), Positives = 165/445 (37%), Gaps = 115/445 (25%)
Sequence:
ATGCTGGTGCTGCCAGACATGGGTCATTTCGTGGATGAACAGGCCCTGGCGCTGCAGGCTCTCCAGGCTCCA
GTCCGCCACGCCGCGCAACTCCTCGCCGAAGTAGATGTGGCCGTTCGGCGCCATCACGTAGTCCTTGCCCTG
CCAGGGGACATAGTCCTCGTCGCGCAGGCGGACCGTGGAATAGTCGATGGAGTCGCCGAATACGTCTTTCGC
CAGGCTGATTTCCCCTTCGCTGAGAGCACGTCCGGCCTCGGCGTCGGGGCCACTCAGGAGCTTGCCGACTGC
AACCGCCGCGCCAACCGCCGCTGCTATCCCGGCAACTGCGGAGGCGGGCGATCTCGTGTGTTTCATATCGAC
CTTGGCGATGTTCATCGCATCCTTCTGCAGCAGCTGGGTGGCGCCTTCGGCGTCGGTGACGCCCTCGATGAC
CTCGCCGTTGGCCATGGTGATGGTATAGGGCACGTTGGGCATGGCCGTCTGCCCGTCCAGTTGCTTGAGGAC
GAACCGCCGCTGCGTCTCGCCCACCTCGAACTGCGGCAGCTCGGCTTCCAGGCTGGCCGCGCCGACATGACT
GTGCTTCGCCGCCTTGACCACGAAGTTGCCGGGCATGCCCAGCTCGATGTTGCCGCCCTTGAGGGTCAGGTA
GGCGCCGCCGCACATCAGGGTGATGTGCTCCTTCGCGGTGACCAGCACGTGCTGCTGGCTGGCGCTGACCTC
CACGCTCTGCTCGGCCTCCAGGCGGATGTCGTTCTTCTGCGCCTGCAGCAGCATCGGCCCCTGGTGGGTGAT
CTGGCGCAGCTCGCCGCCCTGGGCGAACAGGCCGATGTCGCTGCCGGCGTTGATCACCACCTTCTGCCCGGC
GGTCACCTGCTGGTTCTGCCGGGCCACGCTGTCGACGTGCTCGCCGGCGGCCAGGGTCAGGCTCGTCGGCGT
CGCCGCGGCGATCCCTGCCGGACCGCTCAAGGCGATCGCTGGCTTGCCTCCGTTGCTCTTGCCGGACTCGTC
GTTGGCACCGTGGCCGAGGTCGCGCACGGCTTCCTGGAGGGTTTGCTGCGGCGCCGCGTCGTGCCCCACGCC
CTGGTGCTCCCCGGCGTAGTCGCCCAGCTCGCGGGCCAGCTCCAGCGCCGCCTCCAGCACCTGCACCACGAC
GCCTCGGTCGAGATGGCCGGCGCCGGCCCTGAGCTGCTCCTCGGTGCTCAGCAGCAGGCCCCTGGCCGCACG
CACCGCGCCATGTTCGTCGGTGCGCAGTTCGAAGCCCTCGCCGCGCGGCTTGCCGCCTTCGGGCCGAGGATG
GGTCAGGTAGCCCAGGTGCAGCGCGCTGGCACCGTGGTCGCTCATCAGCGCCGCACTGATCTGCGCCGTGGT
GTCGTCGATGCGCAGCTCGTTGGCCCGACTGCCCTTGTACTCCTTGCTCTTGATGGTGCTGAGGATCTTGTG
GTCGGGCAGCGCGTAGGGTGGTCGGTTGGTCGCCCGGTAGGTGCGCCCGGTGACGATCGGCTGGTCGCAGTC
GCCGTCCAGGTAATCGACGATCACCTCCTGGCCAATCCGCGGGATCGCCATGTTTCCCCAGTCGGCACCCGC
CCAGTTCTGCGCGACCCGTATCCAGCAGGTACTGAACTCATCGTGACGTCCCTCGCGATCCCAGGGGAACTG
GACTTTCACCCGCCCCCACTCGTCGCAATGGATCTCTTCCCCTGCCGGGCCGACTACCGTCGCGATCTGCGG
ACCATCGATACGCGGCCGAGGCAGCGGTGCGGGACGCCATTCGACGTCCTCGGGCACCAGTTCGGCGCGCAG
GTCGTAGCTCACCCCCAGAGGGGCGTCGGCGGACTCTTCCTCCTGGCCGGCATACTGGGTGCCGCGATGGAC
CACCCGCACCGGCCGCCACCAGGCGTTGAAGTCGGCACGCGGATGACCTTCCAGGGCAAAGGCGTGGCCCGG
GATCAGCCGCGGGTCGTCGCCGCTGACCGATGCCACCCGTGCATCGCGCCGATGTCCTCTGAGGCGGCTTTC
GCTGAAAGGCCGGCCCGCGCCGCTCTGCTTGTAGCGACCGGGGTAGTCGTAGCGCTCGTAGGACGAGTCCTG
ATGCTCGAGCGCCTCGCCAGCGAGATGATGCTCCTGGTCGTAGGTCGGGCGCTTGAAGCTGTAGTCCCGCTG
GGTCTGTCGAGCCGTACGAACATTTTCGCTGTAGCGGAAGGAATGAAGCACCGGCTGCGGGTTGTCGCCCTC
CGGCTGGGCGCTGAACAGTACCGGGCCGCCGGCGATACGCTCCTGGACGTAGAGCCGGTCGCTGCAGACCAG
GGTGTGGCGGTGTTCGTCGAAGCGGAAGTAGTAGACCAGGccttcctcGAAAGCCAGCCGGTCGTGCAGGTA
GTGATCGCTGTCGCCGGCCTGCACGCAGTATTCGCGCGGCAGGTGCTCATGGTAGATGCGCTGTTCGTAGTC
GAGCACCCGGTGTTCCTTGAGCAGCGCCTGGAGAATCTCCGGAACACTCTTCTCCTGGAAGATCCGCCAGTT
GCAGCACAGCTCCAGGCGCGCCAACTGCGGTTCCAGCAGCAGTTCGTAGCGGGTCCGGCGAAAACCCGAGCT
GCCCTGGGTGAAGTGGCTGACGATGCCATGGACGTAGCGGGCCGGACGGCCGTCCTGCCAGAGGGTGAAGGT
GCCCGGCTGGTCGAGTACCTGCTTGAAATCGATGGCGTTCTTGTCGCTGGCCAGCTTCAGGTTCAGGCGGAA
AGGCTCGCAGAGCGCTTCTTCCAGTTCGAACTCGACGACATCGAACGCGAGTTTCCCTTCGCCGACGACGAA
GGTGAATTTCAGGTCCCTTTGACGCATGGATCGTTCCTTGTTCCTGGCGGGCGGTTCCTCCCCCATCCGTTG
GAGAAGCGAGCCCCACGTTACTCTTGCTCAGCCGCTGCCGAAAGTCTTGGCTCTGTGTCGATTTCGCGAAGT
AGCGGACATTTTCGGCTCGACGGAGAACCGGCCGTACAGGTGTACGACCGGTGTGCCTGTCAACTCACCCTG
CCACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGA
Translation:
MLVLPDMGHFVDEQALALQALQAPVRHAAQLLAEVDVAVRRHHVVLALPGDIVLVAQADRGIVDGVAEYVFR
QADFPFAESTSGLGVGATQELADCNRRANRRCYPGNCGGGRSRVFHIDLGDVHRILLQQLGGAFGVGDALDD
LAVGHGDGIGHVGHGRLPVQLLEDEPPLRLAHLELRQLGFQAGRADMTVLRRLDHEVAGHAQLDVAALEGQV
GAAAHQGDVLLRGDQHVLLAGADLHALLGLQADVVLLRLQQHRPLVGDLAQLAALGEQADVAAGVDHHLLPG
GHLLVLPGHAVDVLAGGQGQARRRRRGDPCRTAQGDRWLASVALAGLVVGTVAEVAHGFLEGLLRRRVVPHA
LVLPGVVAQLAGQLQRRLQHLHHDASVEMAGAGPELLLGAQQQAPGRTHRAMFVGAQFEALAARLAAFGPRM
GQVAQVQRAGTVVAHQRRTDLRRGVVDAQLVGPTALVLLALDGAEDLVVGQRVGWSVGRPVGAPGDDRLVAV
AVQVIDDHLLANPRDRHVSPVGTRPVLRDPYPAGTELIVTSLAIPGELDFHPPPLVAMDLFPCRADYRRDLR
TIDTRPRQRCGTPFDVLGHQFGAQVVAHPQRGVGGLFLLAGILGAAMDHPHRPPPGVEVGTRMTFQGKGVAR
DQPRVVAADRCHPCIAPMSSEAAFAERPARAALLVATGVVVALVGRVLMLERLASEMMLLVVGRALEAVVPL
GLSSRTNIFAVAEGMKHRLRVVALRLGAEQYRAAGDTLLDVEPVAADQGVAVFVEAEVVDQAFLESQPVVQV
VIAVAGLHAVFARQVLMVDALFVVEHPVFLEQRLENLRNTLLLEDPPVAAQLQARQLRFQQQFVAGPAKTRA
ALGEVADDAMDVAGRTAVLPEGEGARLVEYLLEIDGVLVAGQLQVQAERLAERFFQFELDDIEREFPFADDE
GEFQVPLTHGSFLVPGGRFLPHPLEKRAPRYSCSAAAESLGSVSISRSSGHFRLDGEPAVQVYDRCACQLTL
PPGSASRRSRRCRRLRGSR*
AnnotationID:7064GeneID:7064
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:13796
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:31202
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 50066How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 6086779Stop: 6089862
Length: 3084
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCTGGTGCTGCCAGACATGGGTCATTTCGTGGATGAACAGGCCCTGGCGCTGCAGGCTCTCCAGGCTCCA
GTCCGCCACGCCGCGCAACTCCTCGCCGAAGTAGATGTGGCCGTTCGGCGCCATCACGTAGTCCTTGCCCTG
CCAGGGGACATAGTCCTCGTCGCGCAGGCGGACCGTGGAATAGTCGATGGAGTCGCCGAATACGTCTTTCGC
CAGGCTGATTTCCCCTTCGCTGAGAGCACGTCCGGCCTCGGCGTCGGGGCCACTCAGGAGCTTGCCGACTGC
AACCGCCGCGCCAACCGCCGCTGCTATCCCGGCAACTGCGGAGGCGGGCGATCTCGTGTGTTTCATATCGAC
CTTGGCGATGTTCATCGCATCCTTCTGCAGCAGCTGGGTGGCGCCTTCGGCGTCGGTGACGCCCTCGATGAC
CTCGCCGTTGGCCATGGTGATGGTATAGGGCACGTTGGGCATGGCCGTCTGCCCGTCCAGTTGCTTGAGGAC
GAACCGCCGCTGCGTCTCGCCCACCTCGAACTGCGGCAGCTCGGCTTCCAGGCTGGCCGCGCCGACATGACT
GTGCTTCGCCGCCTTGACCACGAAGTTGCCGGGCATGCCCAGCTCGATGTTGCCGCCCTTGAGGGTCAGGTA
GGCGCCGCCGCACATCAGGGTGATGTGCTCCTTCGCGGTGACCAGCACGTGCTGCTGGCTGGCGCTGACCTC
CACGCTCTGCTCGGCCTCCAGGCGGATGTCGTTCTTCTGCGCCTGCAGCAGCATCGGCCCCTGGTGGGTGAT
CTGGCGCAGCTCGCCGCCCTGGGCGAACAGGCCGATGTCGCTGCCGGCGTTGATCACCACCTTCTGCCCGGC
GGTCACCTGCTGGTTCTGCCGGGCCACGCTGTCGACGTGCTCGCCGGCGGCCAGGGTCAGGCTCGTCGGCGT
CGCCGCGGCGATCCCTGCCGGACCGCTCAAGGCGATCGCTGGCTTGCCTCCGTTGCTCTTGCCGGACTCGTC
GTTGGCACCGTGGCCGAGGTCGCGCACGGCTTCCTGGAGGGTTTGCTGCGGCGCCGCGTCGTGCCCCACGCC
CTGGTGCTCCCCGGCGTAGTCGCCCAGCTCGCGGGCCAGCTCCAGCGCCGCCTCCAGCACCTGCACCACGAC
GCCTCGGTCGAGATGGCCGGCGCCGGCCCTGAGCTGCTCCTCGGTGCTCAGCAGCAGGCCCCTGGCCGCACG
CACCGCGCCATGTTCGTCGGTGCGCAGTTCGAAGCCCTCGCCGCGCGGCTTGCCGCCTTCGGGCCGAGGATG
GGTCAGGTAGCCCAGGTGCAGCGCGCTGGCACCGTGGTCGCTCATCAGCGCCGCACTGATCTGCGCCGTGGT
GTCGTCGATGCGCAGCTCGTTGGCCCGACTGCCCTTGTACTCCTTGCTCTTGATGGTGCTGAGGATCTTGTG
GTCGGGCAGCGCGTAGGGTGGTCGGTTGGTCGCCCGGTAGGTGCGCCCGGTGACGATCGGCTGGTCGCAGTC
GCCGTCCAGGTAATCGACGATCACCTCCTGGCCAATCCGCGGGATCGCCATGTTTCCCCAGTCGGCACCCGC
CCAGTTCTGCGCGACCCGTATCCAGCAGGTACTGAACTCATCGTGACGTCCCTCGCGATCCCAGGGGAACTG
GACTTTCACCCGCCCCCACTCGTCGCAATGGATCTCTTCCCCTGCCGGGCCGACTACCGTCGCGATCTGCGG
ACCATCGATACGCGGCCGAGGCAGCGGTGCGGGACGCCATTCGACGTCCTCGGGCACCAGTTCGGCGCGCAG
GTCGTAGCTCACCCCCAGAGGGGCGTCGGCGGACTCTTCCTCCTGGCCGGCATACTGGGTGCCGCGATGGAC
CACCCGCACCGGCCGCCACCAGGCGTTGAAGTCGGCACGCGGATGACCTTCCAGGGCAAAGGCGTGGCCCGG
GATCAGCCGCGGGTCGTCGCCGCTGACCGATGCCACCCGTGCATCGCGCCGATGTCCTCTGAGGCGGCTTTC
GCTGAAAGGCCGGCCCGCGCCGCTCTGCTTGTAGCGACCGGGGTAGTCGTAGCGCTCGTAGGACGAGTCCTG
ATGCTCGAGCGCCTCGCCAGCGAGATGATGCTCCTGGTCGTAGGTCGGGCGCTTGAAGCTGTAGTCCCGCTG
GGTCTGTCGAGCCGTACGAACATTTTCGCTGTAGCGGAAGGAATGAAGCACCGGCTGCGGGTTGTCGCCCTC
CGGCTGGGCGCTGAACAGTACCGGGCCGCCGGCGATACGCTCCTGGACGTAGAGCCGGTCGCTGCAGACCAG
GGTGTGGCGGTGTTCGTCGAAGCGGAAGTAGTAGACCAGGccttcctcGAAAGCCAGCCGGTCGTGCAGGTA
GTGATCGCTGTCGCCGGCCTGCACGCAGTATTCGCGCGGCAGGTGCTCATGGTAGATGCGCTGTTCGTAGTC
GAGCACCCGGTGTTCCTTGAGCAGCGCCTGGAGAATCTCCGGAACACTCTTCTCCTGGAAGATCCGCCAGTT
GCAGCACAGCTCCAGGCGCGCCAACTGCGGTTCCAGCAGCAGTTCGTAGCGGGTCCGGCGAAAACCCGAGCT
GCCCTGGGTGAAGTGGCTGACGATGCCATGGACGTAGCGGGCCGGACGGCCGTCCTGCCAGAGGGTGAAGGT
GCCCGGCTGGTCGAGTACCTGCTTGAAATCGATGGCGTTCTTGTCGCTGGCCAGCTTCAGGTTCAGGCGGAA
AGGCTCGCAGAGCGCTTCTTCCAGTTCGAACTCGACGACATCGAACGCGAGTTTCCCTTCGCCGACGACGAA
GGTGAATTTCAGGTCCCTTTGACGCATGGATCGTTCCTTGTTCCTGGCGGGCGGTTCCTCCCCCATCCGTTG
GAGAAGCGAGCCCCACGTTACTCTTGCTCAGCCGCTGCCGAAAGTCTTGGCTCTGTGTCGATTTCGCGAAGT
AGCGGACATTTTCGGCTCGACGGAGAACCGGCCGTACAGGTGTACGACCGGTGTGCCTGTCAACTCACCCTG
CCACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGA