ViewGene
Locus Name:
GeneID:
Location:

GeneID:7059
TrivialName: PA14_02920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02920
PAO1 Ortholog Locus:
Sequence Length:975
Protein Length:324
Start: 257000
Stop: 257974
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAB58160.1| (U97042) CeoA [Burkholderia cepacia]
Identities = 56/152 (36%), Positives = 69/152 (45%), Gaps = 27/152 (17%)
Sequence:
ATGCTCGGCGCCGGGCATGGCGGCGATGGCCGCACTGGTGCGCCACCCCGAGGACGGACGGGCTCTCGGCGT
GCTCAGCGTGGCCGGGCCGAGCGCACGCTTCGGCGAGGCGCGCATGCACGAACTGGCGCCCCTGCTCCTGGC
CGCGGCGCAGGACCTGTCCCACGCCAGCCAGGCGTCCGAGCTGTTTCGCTGAGCCATCCGGCCCGGCCCCAG
TCCTTTCCCGACATCGGCGTTCGAATAGCGAACGCTTTCTTGCCTGCCACGGAGCCCGCATGCAGCGGGCCT
TTCCGCACTTCCATGGAGGTCCTGGCGGCGCTGCCGTCTCGAAGCGCTCTTGCGCGGGGCCAACTCCTCGTT
CAAATAATCTCCTTCGTTAAATCTGGAACGAAGTTCTGGAATCCTGAGACGAACAAGAAAACAACGATTGGG
GACCGCCTTGGACGCACCGCTTCGCATCGCCCTCATCGGCGCCGGCAACATGGGCCGCCAGCATTACCATCG
CTTGCAGCGAATCGCCGGCGCGCGCCTGTGTGCGGTGGCCGATCCCCAGGGCCAGGCGTTCGCCGCGGACGC
CGGCGTGCCCTGGTTCGGCGATCATCGGAGGTTGCTGGAAGAAGCCCGGCCGCAAGCGGCGATCGTCGCCAA
TCCGAACAACCTGCATGTCGCCACCGCCCTCGACTGCCTCGCCGCCGGGGTGCCGCTGCTGCTGGAAAAACC
GGTCGGCGTGCAGCTCGACGAAGTGAGCGAGCTGGTGGCCGTCGCCCGGCGATCTGGCGTTCCGCTGCTGGT
CGGTCACCATCGTCGGCACAATCCGCTGGTCGTGCGGGCGCGCCAATTGATCGCCGAGGGCGCGCTCGGTCG
GTTGCTGTCGGTCACCGCGCTCTGGCAGTTGAAGAAGCCCGACAGTTATTTCGAGGTGGCCTGGCGTCGCGA
GCCCGGCGCGGGAATGTTGCTGACCAACCTGATCCATGA
Translation:
MLGAGHGGDGRTGAPPRGRTGSRRAQRGRAERTLRRGAHARTGAPAPGRGAGPVPRQPGVRAVSLSHPARPQ
SFPDIGVRIANAFLPATEPACSGPFRTSMEVLAALPSRSALARGQLLVQIISFVKSGTKFWNPETNKKTTIG
DRLGRTASHRPHRRRQHGPPALPSLAANRRRAPVCGGRSPGPGVRRGRRRALVRRSSEVAGRSPAASGDRRQ
SEQPACRHRPRLPRRRGAAAAGKTGRRAARRSERAGGRRPAIWRSAAGRSPSSAQSAGRAGAPIDRRGRARS
VAVGHRALAVEEARQLFRGGLASRARRGNVADQPDP*
AnnotationID:7059GeneID:7059
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 18:06:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13787




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31192




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 50061How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6058341Stop: 6059315

          
Length: 975


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCTCGGCGCCGGGCATGGCGGCGATGGCCGCACTGGTGCGCCACCCCGAGGACGGACGGGCTCTCGGCGT 
GCTCAGCGTGGCCGGGCCGAGCGCACGCTTCGGCGAGGCGCGCATGCACGAACTGGCGCCCCTGCTCCTGGC 
CGCGGCGCAGGACCTGTCCCACGCCAGCCAGGCGTCCGAGCTGTTTCGCTGAGCCATCCGGCCCGGCCCCAG 
TCCTTTCCCGACATCGGCGTTCGAATAGCGAACGCTTTCTTGCCTGCCACGGAGCCCGCATGCAGCGGGCCT 
TTCCGCACTTCCATGGAGGTCCTGGCGGCGCTGCCGTCTCGAAGCGCTCTTGCGCGGGGCCAACTCCTCGTT 
CAAATAATCTCCTTCGTTAAATCTGGAACGAAGTTCTGGAATCCTGAGACGAACAAGAAAACAACGATTGGG 
GACCGCCTTGGACGCACCGCTTCGCATCGCCCTCATCGGCGCCGGCAACATGGGCCGCCAGCATTACCATCG 
CTTGCAGCGAATCGCCGGCGCGCGCCTGTGTGCGGTGGCCGATCCCCAGGGCCAGGCGTTCGCCGCGGACGC 
CGGCGTGCCCTGGTTCGGCGATCATCGGAGGTTGCTGGAAGAAGCCCGGCCGCAAGCGGCGATCGTCGCCAA 
TCCGAACAACCTGCATGTCGCCACCGCCCTCGACTGCCTCGCCGCCGGGGTGCCGCTGCTGCTGGAAAAACC 
GGTCGGCGTGCAGCTCGACGAAGTGAGCGAGCTGGTGGCCGTCGCCCGGCGATCTGGCGTTCCGCTGCTGGT 
CGGTCACCATCGTCGGCACAATCCGCTGGTCGTGCGGGCGCGCCAATTGATCGCCGAGGGCGCGCTCGGTCG 
GTTGCTGTCGGTCACCGCGCTCTGGCAGTTGAAGAAGCCCGACAGTTATTTCGAGGTGGCCTGGCGTCGCGA 
GCCCGGCGCGGGAATGTTGCTGACCAACCTGATCCATGA