ViewGene
Locus Name:
GeneID:
Location:

GeneID:7048
TrivialName: PA14_02440
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02440
PAO1 Ortholog Locus:
Sequence Length:519
Protein Length:172
Start: 219672
Stop: 220190
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaced by GeneID7368 (PA14_02435). Homology: gb|AAG03584.1|AE004457_5 (AE004457) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 170/172 (98%), Positives = 171/172 (99%)
Sequence:
GTGCCGTCCTCCGGCTCGTTGCTCTACGCGCTGGAGGTGCCGTCCAGTGGCGGCGAGACGCGCTTCACCAAC
CTGGCGCGCGCCTACGAGAGCCTCGACGAGGCGACCCGGCGCGAGATCGATGGCCTGCGCCTGATCAACTAC
AACCCCTTCATCCGCCTGCGCGAGGGCGGCTACGGCGGCGGTTTCGCCACCTACCGCACGCCGGACATCGAA
CCGATCCAGGGCAGCGAGCACCCACTGGTACGCACCCACCCGGAAAGCGGCCGGCGCGTACTGTTCCTCAGC
GCCCACACCGAGGTGGAGATTCCCGGCTACGACCCCGCGCGGGGCCAGGCGCTGATCGGTCGCCTGCGCGAA
CATCTGGCGCGCCCGGAACTGAGCTACAGCCACGCCTGGTCGGTGGGCGACATCGTCTGGTGGGACAACCAG
GCCGTGCTGCATGCGCGCAACGCCTTCCCGGCCAGCGAGCGGCGGCGCCTGAAGCGCATCAGCCTGGCGGGC
AGCCGTCCGTTCTGA
Translation:
MPSSGSLLYALEVPSSGGETRFTNLARAYESLDEATRREIDGLRLINYNPFIRLREGGYGGGFATYRTPDIE
PIQGSEHPLVRTHPESGRRVLFLSAHTEVEIPGYDPARGQALIGRLREHLARPELSYSHAWSVGDIVWWDNQ
AVLHARNAFPASERRRLKRISLAGSRPF*
AnnotationID:7048GeneID:7048
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 16:04:15
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2175,pfam02668
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAM35718.1| (AE011715) taurine dioxygenase [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 286

 Score =  120 bits (300), Expect = 5e-27
 Identities = 66/172 (38%), Positives = 96/172 (55%), Gaps = 2/172 (1%)

>emb|CAE39689.1| (BX640436) putative taurine catabolism dioxygenase [Bordetella
           parapertussis]
          Length = 307

 Score =  120 bits (300), Expect = 5e-27
 Identities = 64/172 (37%), Positives = 92/172 (53%)

>gb|AAO58624.1| (AE016874) dioxygenase, TauD/TfdA family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 298

 Score =  119 bits (298), Expect = 8e-27
 Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 2/173 (1%)








 
Structural Features:
COG2175, TauD, Probable taurine catabolism dioxygenase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 286 residues, only  60.1% aligned
Score =  165 bits (420), Expect = 2e-42
Identities = 72/173 (41%), Positives = 97/173 (56%), Gaps = 3/173 (1%)

pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family.
CD-Length = 282 residues, only  61.3% aligned
Score = 97.4 bits (242), Expect = 9e-22
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 14/179 (7%)






   
Genomic Context:






   
Comment:
Replaced by GeneID7368 (PA14_02435).


















    ReferenceID:16771




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31170




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33555




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:7048_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7048
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8068
                           PA0194_tr
                           translation of PA0194
                           299
                           57.19
                           57.19
                           127
                           898.0
     

     
     
203106
                           gb|AAG03584.1|AE004457_5
                           (AE004457) hypothetical protein PA0194 [Pseudomonas aeruginosa PAO1]
                           299
                           57.19
                           57.19
                           127
                           898.0
     

     






      

          
GC ORFID: 50050How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6021013Stop: 6021531

          
Length: 519


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0194 translation of PA0194Homolog Bit Score 350.0

          
Other Homologs:  t_PA0194 translation of PA0194 (BLASTP 350)

          
GC ORF Sequence

           
GTGCCGTCCTCCGGCTCGTTGCTCTACGCGCTGGAGGTGCCGTCCAGTGGCGGCGAGACGCGCTTCACCAAC 
CTGGCGCGCGCCTACGAGAGCCTCGACGAGGCGACCCGGCGCGAGATCGATGGCCTGCGCCTGATCAACTAC 
AACCCCTTCATCCGCCTGCGCGAGGGCGGCTACGGCGGCGGTTTCGCCACCTACCGCACGCCGGACATCGAA 
CCGATCCAGGGCAGCGAGCACCCACTGGTACGCACCCACCCGGAAAGCGGCCGGCGCGTACTGTTCCTCAGC 
GCCCACACCGAGGTGGAGATTCCCGGCTACGACCCCGCGCGGGGCCAGGCGCTGATCGGTCGCCTGCGCGAA 
CATCTGGCGCGCCCGGAACTGAGCTACAGCCACGCCTGGTCGGTGGGCGACATCGTCTGGTGGGACAACCAG 
GCCGTGCTGCATGCGCGCAACGCCTTCCCGGCCAGCGAGCGGCGGCGCCTGAAGCGCATCAGCCTGGCGGGC 
AGCCGTCCGTTCTGA