ViewGene
Locus Name:
GeneID:
Location:

GeneID:7047
TrivialName: PA14_02430
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02430
PAO1 Ortholog Locus:
Sequence Length:519
Protein Length:172
Start: 219291
Stop: 219807
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Replaced by GeneID7368 (PA14_02435). Homology: gb|AAG03584.1|AE004457_5 (AE004457) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 111/120 (92%), Positives = 112/120 (93%)
Sequence:
ATGAGCCAATCCGCCACCGCCCGGCAACCCGAACCCGAGGTCGCCGAGGCATTCCGCATCACCCCCCTGGAG
GCGCCGCTGGGCGCCGAAGTCCGTGGCCTCGACGCGCGCCGGCCGCTGGCGCCGGAGCAGGTCCTGGCGCTC
AAGCAGGCGCTGCGCGAGCACCACATCCTGGTGTTCCGCCAGCAGCACCTCGACGATGAGCAGTACTTGCGC
TTCGCCACCCTGTTCGGCTCGGTGTTCCAGCCGCCGGCGGACATCCCGGTGCTGTCCTCGGGTGGCGACGGC
aaggtgCCggagatcGtcaaggtGgccaacaCCGGCGAcgggCGAACTGGGCAACTTCGCCCTGCcgggCAC
ACATCGaccacCAATGGACGCCGGTGCCGTCCTCCGGCTCGTTGCTCTACGCGCTGGAGGTGCCGTCCAGTG
GCGGCGAGACGCGCTTCACCAACCTGGCGCGCGCCTACGAGAGCCTCGACGAGGCGACCCGGCGCGAGATCG
ATGGCCTGCGCCTGA
Translation:
MSQSATARQPEPEVAEAFRITPLEAPLGAEVRGLDARRPLAPEQVLALKQALREHHILVFRQQHLDDEQYLR
FATLFGSVFQPPADIPVLSSGGDGKVPEIVKVANTGDGRTGQLRPAGHTSTTNGRRCRPPARCSTRWRCRPV
AARRASPTWRAPTRASTRRPGARSMACA*
AnnotationID:7047GeneID:7047
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 16:04:31
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2175
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAM40090.1| (AE012177) taurine dioxygenase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 300

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 7/121 (5%)

>dbj|BAC00965.1| (AB086390) alpha-ketoglutarate-dependent dioxygenase [Pseudomonas
          putida]
          Length = 277

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 27/65 (41%), Positives = 40/65 (61%)

>emb|CAE35362.1| (BX640452) putative taurine catabolism dioxygenase [Bordetella
           bronchiseptica]
          Length = 307

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 14/115 (12%)






 
Structural Features:
COG2175, TauD, Probable taurine catabolism dioxygenase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 286 residues, only  50.3% aligned
Score = 76.1 bits (187), Expect = 2e-15
Identities = 42/154 (27%), Positives = 60/154 (38%), Gaps = 11/154 (7%)

CD-Length = 286 residues, only  50.3% aligned
Score = 76.1 bits (187), Expect = 2e-15






   
Genomic Context:






   
Comment:
Replaced by GeneID7368 (PA14_02435).


















    ReferenceID:13764




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31168




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33554




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:7047_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7047
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8067
                           PA0194_tr
                           translation of PA0194
                           334
                           35.32
                           36.22
                           197
                           551.0
     

     
     
203105
                           gb|AAG03584.1|AE004457_5
                           (AE004457) hypothetical protein PA0194 [Pseudomonas aeruginosa PAO1]
                           334
                           35.32
                           36.22
                           197
                           551.0
     

     






      

          
GC ORFID: 50049How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6020630Stop: 6021148

          
Length: 519


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0194 translation of PA0194Homolog Bit Score 221.0

          
Other Homologs:  t_PA0194 translation of PA0194 (BLASTP 221)

          
GC ORF Sequence

           
ATGAGCCAATCCGCCACCGCCCGGCAACCCGAACCCGAGGTCGCCGAGGCATTCCGCATCACCCCCCTGGAG 
GCGCCGCTGGGCGCCGAAGTCCGTGGCCTCGACGCGCGCCGGCCGCTGGCGCCGGAGCAGGTCCTGGCGCTC 
AAGCAGGCGCTGCGCGAGCACCACATCCTGGTGTTCCGCCAGCAGCACCTCGACGATGAGCAGTACTTGCGC 
TTCGCCACCCTGTTCGGCTCGGTGTTCCAGCCGCCGGCGGACATCCCGGTGCTGTCCTCGGGTGGCGACGGC 
aaggtgCCggagatcGtcaaggtGgccaacaCCGGCGAcgggCGAACTGGGCAACTTCGCCCTGCcgggCAC 
ACATCGaccacCAATGGACGCCGGTGCCGTCCTCCGGCTCGTTGCTCTACGCGCTGGAGGTGCCGTCCAGTG 
GCGGCGAGACGCGCTTCACCAACCTGGCGCGCGCCTACGAGAGCCTCGACGAGGCGACCCGGCGCGAGATCG 
ATGGCCTGCGCCTGA