ViewGene

Locus Name:
GeneID:
Location:

GeneID: 7037

TrivialName: PA14_02080

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_02080

PAO1 Ortholog Locus:

Sequence Length: 1338

Protein Length: 445

Start: 190479

Stop: 189142

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAM37943.1| (AE011953) PilL protein [Xanthomonas axonopodis pv. citri str. 306] Identities = 111/429 (25%), Positives = 165/429 (38%), Gaps = 54/429 (12%)

Sequence:

TTGCAAACGCCCGTATCAACCCAGCGGCTTGCGCCAGCGCGCCAGGGCGCCGCCCTTCGCGCTGGCCTGCGC
CGCTTCGGCAACGCGCTCCTCGGGCAGCAGCAGGTTGAGCAGGATGGCGGTGATGCCGCCGCTGGTGATCGC
CGAGTCGAACAGGGTCTTCACCACCGCCGGCATCTGGTCGAGCAGGGTCGGCTGCGCGGCCACGCCGAGGCC
GACGCCGAACGAGGCGGCGATGATCAGCACGCTGCGGCGGTCCATCGCGGTCTGGCCGAGAATGCGGATGCC
GGCGGCGGCGACGCTGCCGAACATCACCAGGGTGGCGCCGCCGAGCACCGGCTTGGGGATCTGCTGGAGGAT
CGCGCCGATCCAGGGGAACAGGCCGAGCGCCAGCAACACGCCGCCGATATAGATCCCGACGTGCCGGCTGGC
CACCCCGGTGAGCTGGATCACCCCGTTGTTCTGCGCGAAGGTGGTGTTCGGGAAGGCGCTGAAGGTGGCTGC
CAGCAGGCAACTGACGCCGTCGCCGAGCACTCCGCCGCGCAACCGCTGCAGATACGCCGGCCCCTCCAGGGG
CTGCCGCGAGAGCATGCAGTTGGCGGTCAGGTCGCCGACCGTCTCGATGCTGCTGATCAGGTAGATCAGCGC
CACCGGCAGGAAGGCCATCCAGTCGAAGGCGAAGCCGAAGCGGAACGGCTGCGGCAGGCTGACCAGCGGCAG
CTCGGGCAACGCCCGCGGAACGAACAGGCCGGTCGCCCAGGCCGCCAGGGTACCCAGCGCCAGGCCGATGAC
GATGGCGGCCAGGCGCAGCCAGGGCAGGCGCGAGCGGTTCAGCAGGACGATGCTCAGCAGCACCAGCGCGCC
CAGCGCGAGATTGGCCGGTGCGCCGAAGTCCGTGGCCCCGGCTCCGCCGCCGAGGTCGGTGATGCCGACCTT
GATCAGGCTGACGCCGATCAGGGTGATGACGATGCCGGTGACCAGCGGCGTGATCACCCGGCGAAGATGGCC
GAGGAACCGACTGAGGACGATCTGCACGAAGGCGCCGAAGAAGCACACGCCGAAGATCATCGCGAGGATCTC
CTCGGGACCGCCGCCGCGCTGCTTCACCAGCATCCCGGCGGCCAGCACGGCGCCGAGGAAGGCGAAGCTGGT
GCCTTGCAGGCAGATCATCCCGGCGCCGATGCCGAACGGCCGGCGCGCCTGGATCAGGGTGCCGGCGCCGGA
AACCATCAGCGCCATGCTGATCAGGTACGGCAGGTGCTCGCCGAGGCCGAGCAGCGAGCCGATCACCAGCGG
CGGAGTGACGATGCCGACGAAGCTGGCCAGCACGTGCTGTAG

Translation:

MQTPVSTQRLAPARQGAALRAGLRRFGNALLGQQQVEQDGGDAAAGDRRVEQGLHHRRHLVEQGRLRGHAEA
DAERGGDDQHAAAVHRGLAENADAGGGDAAEHHQGGAAEHRLGDLLEDRADPGEQAERQQHAADIDPDVPAG
HPGELDHPVVLREGGVREGAEGGCQQATDAVAEHSAAQPLQIRRPLQGLPREHAVGGQVADRLDAADQVDQR
HRQEGHPVEGEAEAERLRQADQRQLGQRPRNEQAGRPGRQGTQRQADDDGGQAQPGQARAVQQDDAQQHQRA
QREIGRCAEVRGPGSAAEVGDADLDQADADQGDDDAGDQRRDHPAKMAEEPTEDDLHEGAEEAHAEDHREDL
LGTAAALLHQHPGGQHGAEEGEAGALQADHPGADAERPARLDQGAGAGNHQRHADQVRQVLAEAEQRADHQR
RSDDADEAGQHVL*

AnnotationID:7037 GeneID:7037

AnnotatorUID: diggins

Modification Date/Time: 2004-07-27 20:08:09

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16756

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:31148

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33515

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 7037_cdd.html

URL:

GC ORFID: `50039`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5991818`	Stop: `5990481`
Length: `1338`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCAAACGCCCGTATCAACCCAGCGGCTTGCGCCAGCGCGCCAGGGCGCCGCCCTTCGCGCTGGCCTGCGC CGCTTCGGCAACGCGCTCCTCGGGCAGCAGCAGGTTGAGCAGGATGGCGGTGATGCCGCCGCTGGTGATCGC CGAGTCGAACAGGGTCTTCACCACCGCCGGCATCTGGTCGAGCAGGGTCGGCTGCGCGGCCACGCCGAGGCC GACGCCGAACGAGGCGGCGATGATCAGCACGCTGCGGCGGTCCATCGCGGTCTGGCCGAGAATGCGGATGCC GGCGGCGGCGACGCTGCCGAACATCACCAGGGTGGCGCCGCCGAGCACCGGCTTGGGGATCTGCTGGAGGAT CGCGCCGATCCAGGGGAACAGGCCGAGCGCCAGCAACACGCCGCCGATATAGATCCCGACGTGCCGGCTGGC CACCCCGGTGAGCTGGATCACCCCGTTGTTCTGCGCGAAGGTGGTGTTCGGGAAGGCGCTGAAGGTGGCTGC CAGCAGGCAACTGACGCCGTCGCCGAGCACTCCGCCGCGCAACCGCTGCAGATACGCCGGCCCCTCCAGGGG CTGCCGCGAGAGCATGCAGTTGGCGGTCAGGTCGCCGACCGTCTCGATGCTGCTGATCAGGTAGATCAGCGC CACCGGCAGGAAGGCCATCCAGTCGAAGGCGAAGCCGAAGCGGAACGGCTGCGGCAGGCTGACCAGCGGCAG CTCGGGCAACGCCCGCGGAACGAACAGGCCGGTCGCCCAGGCCGCCAGGGTACCCAGCGCCAGGCCGATGAC GATGGCGGCCAGGCGCAGCCAGGGCAGGCGCGAGCGGTTCAGCAGGACGATGCTCAGCAGCACCAGCGCGCC CAGCGCGAGATTGGCCGGTGCGCCGAAGTCCGTGGCCCCGGCTCCGCCGCCGAGGTCGGTGATGCCGACCTT GATCAGGCTGACGCCGATCAGGGTGATGACGATGCCGGTGACCAGCGGCGTGATCACCCGGCGAAGATGGCC GAGGAACCGACTGAGGACGATCTGCACGAAGGCGCCGAAGAAGCACACGCCGAAGATCATCGCGAGGATCTC CTCGGGACCGCCGCCGCGCTGCTTCACCAGCATCCCGGCGGCCAGCACGGCGCCGAGGAAGGCGAAGCTGGT GCCTTGCAGGCAGATCATCCCGGCGCCGATGCCGAACGGCCGGCGCGCCTGGATCAGGGTGCCGGCGCCGGA AACCATCAGCGCCATGCTGATCAGGTACGGCAGGTGCTCGCCGAGGCCGAGCAGCGAGCCGATCACCAGCGG CGGAGTGACGATGCCGACGAAGCTGGCCAGCACGTGCTGTAG