ViewGene
Locus Name:
GeneID:
Location:

GeneID:703
TrivialName: PA14_26970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26970
PAO1 Ortholog Locus:PA2870
Sequence Length:1578
Protein Length:525
Start: 2347231
Stop: 2345654
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06258.1|AE004713_7 (AE004713) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 525/525 (100%), Positives = 525/525 (100%)
Sequence:
ATGACTGTGCCGCTGCTCGATCCGACAAAGCTGCGCCGGCAACGCCAGATCATGGGGCTGTTGCTCGGCTTG
GTGCTGCTCATGGCGCTGATCGCCGGGGCTGCGCTGTGGCTGGCGGTGCGCCAGGCCCAGCAACTGGCCCAG
CCGAACCTGCACAACGAGCTGTGGCAGACCTACTCGCTGCGCGCCGAACTGGATCGCACGCTGGACGCCGCG
CGGCACACCGAGAGCGGCGAAGGCCAAGCCGACGACCTGGCGATCCGTCTCGAAGTCCTCGCCAGCCTGATC
GCGCCGCTGCGCCGCCAGTCGTTGTTCAGGCATCTCGCCGAACCGCGTCCGGAGGTACAGGCCACCCTGCAA
CGCCTGATCGAGCTCAGCGATCGCTGGTCGGACCAGGCCCCCTGGGGCGATCCCGTCGCCGCGCGCCGCCTG
GCCGCGGAGATCGTCCAGCAGGTCCCGCCCTTGCTCGAACCGACCCACCAGATCGTCGTCGCCAGCAACATC
GCCCTGACCAACCAGTTGGACGTCGACCGCAAGCGCCTGCACCGGGCGTTCTACGCGTTGTTCTGGGCGCTG
CTCGGGATCGGTGCCGGCGGTGCCCTGCTGGTGCTGCGCCTGGTCGCTGACTTCAAGCGCGCGCAGCAACTG
GCCGGGCATCTGATCGAGCTTAACGCCACCCTGGAGAAACGCGTCGGCGAGCGCACCCGCCAGCTCAGCGAA
GGCAAGGCGCTGCTGCATTTCATCCTCGAGGCCAGCCCGAGCGACGTGGTCCTGCTCAGCGCCTGCGGCGCC
AGCATCCATTACGTCAGCCCGCGCCTGCTCAAGCGCCTGGGTTGCCAGGCCCAGGACGACTTCAACCTGCCC
CGGCTGTTCGCCAGCGCCAGCGAATACAGCCGCCTCCAGAACGCCCTGGAGGCGCGCGGCCAGGTGGATGGC
TGGGAAGCCCAGCTATGCGGGGAAACGCCTTGCTGGGCGGTGATCTGCGCGCGCCACCTGGAAATCGACGGC
GAGCCGGCGACCCTGATCTGGTGCTACGACATCAGCCGGCGCAAGGCCATGGAACAGGAACTGCGCCTGCTG
GCCAGCACCGATACCCTGACCGGCCTGCACAACCGCCACTCGTTCCTGCACCAGGCGGAACTCATGCTCAAG
GCCGCCGAACGCTTCCGCCACCCCTGCGTGGCGCTGATGCTGGACATCGACCATTTCAAGAACATCAACGAC
AGCCACGGCCACCTGACCGGCGACCGCGCCCTGCAACGTGTCGCCGAGACCCTGCGCCAGGGCCTGCGCGAG
GTGGACCTGCTCGGTCGCCTGGGCGGCGAGGAATTCGCCGCGCTGCTTCCGGAGGTCAGCCTGGACCAGGCG
CTGGACGTCGCCGAACGGCTGCGCGCCGGCGTCGAGGCGCTACGGGTGAGCAATCCCGACGGCGAACCGTTG
CGAATGACCGTGAGCATCGGCGTCGCCCTGCGCAGGGACGCCGGGGACGACCTGGAAAGCCTGCTGGTGCGC
GCCGACAGCGCGCTCTACCAGGCCAAGAGCGGCGGGCGCAACCGCACCGAGTACGCGCCCGCCTGA
Translation:
MTVPLLDPTKLRRQRQIMGLLLGLVLLMALIAGAALWLAVRQAQQLAQPNLHNELWQTYSLRAELDRTLDAA
RHTESGEGQADDLAIRLEVLASLIAPLRRQSLFRHLAEPRPEVQATLQRLIELSDRWSDQAPWGDPVAARRL
AAEIVQQVPPLLEPTHQIVVASNIALTNQLDVDRKRLHRAFYALFWALLGIGAGGALLVLRLVADFKRAQQL
AGHLIELNATLEKRVGERTRQLSEGKALLHFILEASPSDVVLLSACGASIHYVSPRLLKRLGCQAQDDFNLP
RLFASASEYSRLQNALEARGQVDGWEAQLCGETPCWAVICARHLEIDGEPATLIWCYDISRRKAMEQELRLL
ASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRALQRVAETLRQGLRE
VDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEALRVSNPDGEPLRMTVSIGVALRRDAGDDLESLLVR
ADSALYQAKSGGRNRTEYAPA*
AnnotationID:712GeneID:703
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 07:07:01
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA2870
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN33799.1|AE014558_1 (AE014558) response regulator/GGDEF domain protein [Brucella suis
           1330]
          Length = 461

 Score =  137 bits (344), Expect = 2e-31
 Identities = 79/178 (44%), Positives = 109/178 (61%), Gaps = 4/178 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1409




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18551




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36206




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:703_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:703
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1189
                           PA2870_tr
                           translation of PA2870
                           525
                           99.99
                           99.99
                           0
                           2660.0
     

     
     
45112
                           gb|AAG06258.1|AE004713_7
                           (AE004713) hypothetical protein PA2870 [Pseudomonas aeruginosa PAO1]
                           525
                           99.99
                           99.99
                           0
                           2660.0
     

     
     
45243
                           gb|AAG08228.1|AE004897_6
                           (AE004897) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           611
                           28.15
                           41.08
                           155
                           335.0
     

     
     
1197
                           PA4843_tr
                           translation of PA4843
                           611
                           28.15
                           41.08
                           155
                           335.0
     

     
     
45120
                           gb|AAO54829.1|
                           (AE016860) GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           593
                           27.48
                           37.94
                           159
                           365.0
     

     






      

          
GC ORFID: 43705How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2870Glimmer Score: 

          
Start: 2606695Stop: 2608272

          
Length: 1578


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2870 translation of PA2870Homolog Bit Score 1029.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3021 (ORF: BLASTX 131.0), t_PA3177 (ORF: BLASTX 129.0), t_PA0290 (ORF: BLASTX 127.0), t_PA3702 (ORF: BLASTX 117.0), psyr_15may02_Scaffold3_revised_gene4587 (ORF: BLASTX 111.0), psyr_15may02_Scaffold8_revised_gene7692 (ORF: BLASTX 104.0), t_PA2870 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGTGCCGCTGCTCGATCCGACAAAGCTGCGCCGGCAACGCCAGATCATGGGGCTGTTGCTCGGCTTG 
GTGCTGCTCATGGCGCTGATCGCCGGGGCTGCGCTGTGGCTGGCGGTGCGCCAGGCCCAGCAACTGGCCCAG 
CCGAACCTGCACAACGAGCTGTGGCAGACCTACTCGCTGCGCGCCGAACTGGATCGCACGCTGGACGCCGCG 
CGGCACACCGAGAGCGGCGAAGGCCAAGCCGACGACCTGGCGATCCGTCTCGAAGTCCTCGCCAGCCTGATC 
GCGCCGCTGCGCCGCCAGTCGTTGTTCAGGCATCTCGCCGAACCGCGTCCGGAGGTACAGGCCACCCTGCAA 
CGCCTGATCGAGCTCAGCGATCGCTGGTCGGACCAGGCCCCCTGGGGCGATCCCGTCGCCGCGCGCCGCCTG 
GCCGCGGAGATCGTCCAGCAGGTCCCGCCCTTGCTCGAACCGACCCACCAGATCGTCGTCGCCAGCAACATC 
GCCCTGACCAACCAGTTGGACGTCGACCGCAAGCGCCTGCACCGGGCGTTCTACGCGTTGTTCTGGGCGCTG 
CTCGGGATCGGTGCCGGCGGTGCCCTGCTGGTGCTGCGCCTGGTCGCTGACTTCAAGCGCGCGCAGCAACTG 
GCCGGGCATCTGATCGAGCTTAACGCCACCCTGGAGAAACGCGTCGGCGAGCGCACCCGCCAGCTCAGCGAA 
GGCAAGGCGCTGCTGCATTTCATCCTCGAGGCCAGCCCGAGCGACGTGGTCCTGCTCAGCGCCTGCGGCGCC 
AGCATCCATTACGTCAGCCCGCGCCTGCTCAAGCGCCTGGGTTGCCAGGCCCAGGACGACTTCAACCTGCCC 
CGGCTGTTCGCCAGCGCCAGCGAATACAGCCGCCTCCAGAACGCCCTGGAGGCGCGCGGCCAGGTGGATGGC 
TGGGAAGCCCAGCTATGCGGGGAAACGCCTTGCTGGGCGGTGATCTGCGCGCGCCACCTGGAAATCGACGGC 
GAGCCGGCGACCCTGATCTGGTGCTACGACATCAGCCGGCGCAAGGCCATGGAACAGGAACTGCGCCTGCTG 
GCCAGCACCGATACCCTGACCGGCCTGCACAACCGCCACTCGTTCCTGCACCAGGCGGAACTCATGCTCAAG 
GCCGCCGAACGCTTCCGCCACCCCTGCGTGGCGCTGATGCTGGACATCGACCATTTCAAGAACATCAACGAC 
AGCCACGGCCACCTGACCGGCGACCGCGCCCTGCAACGTGTCGCCGAGACCCTGCGCCAGGGCCTGCGCGAG 
GTGGACCTGCTCGGTCGCCTGGGCGGCGAGGAATTCGCCGCGCTGCTTCCGGAGGTCAGCCTGGACCAGGCG 
CTGGACGTCGCCGAACGGCTGCGCGCCGGCGTCGAGGCGCTACGGGTGAGCAATCCCGACGGCGAACCGTTG 
CGAATGACCGTGAGCATCGGCGTCGCCCTGCGCAGGGACGCCGGGGACGACCTGGAAAGCCTGCTGGTGCGC 
GCCGACAGCGCGCTCTACCAGGCCAAGAGCGGCGGGCGCAACCGCACCGAGTACGCGCCCGCCTGA