ViewGene

Locus Name:
GeneID:
Location:

GeneID:7024
TrivialName: PA14_01590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01590
PAO1 Ortholog Locus:
Sequence Length:1554
Protein Length:517
Start: 145441
Stop: 146994
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA49824.1| (X70360) carR [Azospirillum brasilense]
Identities = 55/186 (29%), Positives = 73/186 (39%), Gaps = 14/186 (7%)
Sequence:
ATGGTCGTTACCGACCATGCCTGTTGTCGTCAGCCTTCAGAGGCTGGGGAAGGCGAATTGCGAGGCCTCGTG
GCTGGCCCGCTGCGGCCAGCGCTGGGTGATGGCCTTGCGCCGGGTGTAGAAGCGCACGCCGTCCGGGCCGTA
GGCGTGGAGGTCGCCGAACAGCGAGCGCTTCCAGCCGCCGAAGCTGTGGTAGGCTACCGGCACCGGCAGCGG
GACGTTGACGCCGACCATGCCGACCTCGATCTCGTCGCAGAACAGGCGGGCGGCCTCGCCGTCGCGAGTGAA
GATGCAGGTGCCGTTGCCGTATTCGTGGTCGTTGATCAACTGCATGGCCTCTTCCAGGCTGTTGACGCGAAC
CACGCACAGCACCGGGCCGAAGATCTCTTCCTTGTAGATGGTCATTTCCGGGGTCACCCGGTCGAACAGGCT
GCCGCCGAGGAAGAAGCCGTTCTCGTGGCCGGCGACCTGGTAGCCGCGGCCGTCCACCACCAGCTCCGCGCC
CTGGGCCACGCCGCTGTCGATGTAGCCGGTGACCTTGGCCTGCGCGGCGGCAGTGACCAGCGGGCCCATGTC
GAGGCCGCAGGAAGTGCCGGCGCCGATCTTCAGCGCCTTGATCTGCGGAACCAGCTTGGCGATCAGCGCGTC
GGCCACCTGGTCGCCGACGCATACCGCCACCGAGATCGCCATGCAGCGCTCGCCGCAGGAGCCGTAGGCGGC
ACCCATCAGCGCGCTGACGGCGTTGTCGAGGTCGGCGTCGGGCATCAGCACCGCATGGTTCTTCGCGCCGCC
CAGGGCCTGCACGCGCTTGCCGCGCTTGGTGCCCTCGGCATAGATGTATTCGGCGATGGGGGTCGAGCCGAC
GAAGCTGATGGCTTTCACTTCCGGCGCCTGGAGCAGGCCGTCCACGGCTTCCTTGTCGCCGTGCACCACGTT
CAGCACGCCCTTCGGCAGGCCGGCTTCGTGGAACAGCTCGGCGATCAGCAGGGTGGAGCTGGGGTCGCGCTC
GGAGGGCTTGAGGATGAAGGTGTTGCCGCAGGCGATGGCCAGCGGGTACATCCACAGCGGCACCATCGCCGG
GAAGTTGAACGGGGTGATCCCGGCGACCACGCCGATCGGCTGGAAGTCGCTCCAGGCGTCGATGTTCGGGCC
GACGTTGCGGCTGTACTCGCCCTTGAGGATTTCCGGGGCGGCGCAGGCGTACTCGACGTTCTCGATGCCGCG
CTTGAGTTCGCCGGCGGCGTCTTCCAGGGTCTTGCCGTGCTCTTCGCTGATCAGCTTGGAAATCCGCGCCTC
GTTCTGCTCCAGCAGTTGCTTGAAGCGGTACAGCACCTGTGCGCGCTTGGCCGGCGGGGTGTTGCGCCAGGC
CGGGAAGGCGGCCCTGGCGGCATCGATGGCTTTCTGCAGGGTCTTGCCGTCGGCCAGCGGGACCTTGTGGAT
GGCTTCGCCGGTGGAGGGGTTGAAGACGTCGGCGCTGCGGCCGTTGTCGGCGACCATTTCGCCGTTGATCAG
GTGGTGGAGGGTGCCCATCTTGTCTTGTTCTCTCTTCGCTAG
Translation:
MVVTDHACCRQPSEAGEGELRGLVAGPLRPALGDGLAPGVEAHAVRAVGVEVAEQRALPAAEAVVGYRHRQR
DVDADHADLDLVAEQAGGLAVASEDAGAVAVFVVVDQLHGLFQAVDANHAQHRAEDLFLVDGHFRGHPVEQA
AAEEEAVLVAGDLVAAAVHHQLRALGHAAVDVAGDLGLRGGSDQRAHVEAAGSAGADLQRLDLRNQLGDQRV
GHLVADAYRHRDRHAALAAGAVGGTHQRADGVVEVGVGHQHRMVLRAAQGLHALAALGALGIDVFGDGGRAD
EADGFHFRRLEQAVHGFLVAVHHVQHALRQAGFVEQLGDQQGGAGVALGGLEDEGVAAGDGQRVHPQRHHRR
EVERGDPGDHADRLEVAPGVDVRADVAAVLALEDFRGGAGVLDVLDAALEFAGGVFQGLAVLFADQLGNPRL
VLLQQLLEAVQHLCALGRRGVAPGREGGPGGIDGFLQGLAVGQRDLVDGFAGGGVEDVGAAAVVGDHFAVDQ
VVEGAHLVLFSLR*
AnnotationID:7024GeneID:7024
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 05:05:14
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:13724
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:31122
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 50026How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5946780Stop: 5948333
Length: 1554
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGTCGTTACCGACCATGCCTGTTGTCGTCAGCCTTCAGAGGCTGGGGAAGGCGAATTGCGAGGCCTCGTG
GCTGGCCCGCTGCGGCCAGCGCTGGGTGATGGCCTTGCGCCGGGTGTAGAAGCGCACGCCGTCCGGGCCGTA
GGCGTGGAGGTCGCCGAACAGCGAGCGCTTCCAGCCGCCGAAGCTGTGGTAGGCTACCGGCACCGGCAGCGG
GACGTTGACGCCGACCATGCCGACCTCGATCTCGTCGCAGAACAGGCGGGCGGCCTCGCCGTCGCGAGTGAA
GATGCAGGTGCCGTTGCCGTATTCGTGGTCGTTGATCAACTGCATGGCCTCTTCCAGGCTGTTGACGCGAAC
CACGCACAGCACCGGGCCGAAGATCTCTTCCTTGTAGATGGTCATTTCCGGGGTCACCCGGTCGAACAGGCT
GCCGCCGAGGAAGAAGCCGTTCTCGTGGCCGGCGACCTGGTAGCCGCGGCCGTCCACCACCAGCTCCGCGCC
CTGGGCCACGCCGCTGTCGATGTAGCCGGTGACCTTGGCCTGCGCGGCGGCAGTGACCAGCGGGCCCATGTC
GAGGCCGCAGGAAGTGCCGGCGCCGATCTTCAGCGCCTTGATCTGCGGAACCAGCTTGGCGATCAGCGCGTC
GGCCACCTGGTCGCCGACGCATACCGCCACCGAGATCGCCATGCAGCGCTCGCCGCAGGAGCCGTAGGCGGC
ACCCATCAGCGCGCTGACGGCGTTGTCGAGGTCGGCGTCGGGCATCAGCACCGCATGGTTCTTCGCGCCGCC
CAGGGCCTGCACGCGCTTGCCGCGCTTGGTGCCCTCGGCATAGATGTATTCGGCGATGGGGGTCGAGCCGAC
GAAGCTGATGGCTTTCACTTCCGGCGCCTGGAGCAGGCCGTCCACGGCTTCCTTGTCGCCGTGCACCACGTT
CAGCACGCCCTTCGGCAGGCCGGCTTCGTGGAACAGCTCGGCGATCAGCAGGGTGGAGCTGGGGTCGCGCTC
GGAGGGCTTGAGGATGAAGGTGTTGCCGCAGGCGATGGCCAGCGGGTACATCCACAGCGGCACCATCGCCGG
GAAGTTGAACGGGGTGATCCCGGCGACCACGCCGATCGGCTGGAAGTCGCTCCAGGCGTCGATGTTCGGGCC
GACGTTGCGGCTGTACTCGCCCTTGAGGATTTCCGGGGCGGCGCAGGCGTACTCGACGTTCTCGATGCCGCG
CTTGAGTTCGCCGGCGGCGTCTTCCAGGGTCTTGCCGTGCTCTTCGCTGATCAGCTTGGAAATCCGCGCCTC
GTTCTGCTCCAGCAGTTGCTTGAAGCGGTACAGCACCTGTGCGCGCTTGGCCGGCGGGGTGTTGCGCCAGGC
CGGGAAGGCGGCCCTGGCGGCATCGATGGCTTTCTGCAGGGTCTTGCCGTCGGCCAGCGGGACCTTGTGGAT
GGCTTCGCCGGTGGAGGGGTTGAAGACGTCGGCGCTGCGGCCGTTGTCGGCGACCATTTCGCCGTTGATCAG
GTGGTGGAGGGTGCCCATCTTGTCTTGTTCTCTCTTCGCTAG