ViewGene
Locus Name:
GeneID:
Location:

GeneID:7006
TrivialName: PA14_00920
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00920
PAO1 Ortholog Locus:PA0078
Sequence Length:1272
Protein Length:423
Start: 93967
Stop: 92696
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
INACTIVATED, replaced with GeneID7367(PA14_00925). Homology: gb|AAG03468.1|AE004447_1 (AE004447) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 423/423 (100%), Positives = 423/423 (100%)
Sequence:
ATGCCGCGTCCCGGCGGCCGCGCCCCGGAACCGGCCGGCGGCCCCCGCGGCGGCGATCCCTACACGCCGCCG
CCGATGGCCAGCCTGGCGCCGCTGAGCGGCCGCGGCGACGGCCTCAACCCGCTGGAGCAGGCCGCCGGCCCA
CTGCTGGCGATGCTCACCCGCCTGCGCAACACCATCGCCCATCCGGCGCCGGCCAGCCTGCGCGCGCAACTG
CTCGGCTACCTGCGCCAGTTCGAGGAGAAGGCACGCCAGGCCGGCGTGGCGCCGGACGAAGTGATGCTGGCG
CGCTACGTGCTCTGCACCGCCCTCGACGAAGCGGTGCTCAGCACGCCGTGGGGCAGCACCAGCGACTGGGGC
AAGCAGAGCCTGCTGATCACCCTGCACAACGAGGCCTGGGGCGGCGAGAAGGTCTTCCAGTTGCTCGAACAC
TGCCTGCAGAACCCGCACCAGCGCCTGCACCTGCTGGAGCTGCTGTACCTGTGCACCAGCCTCGGCTTCGAA
GGCCGCTACCGGGTCATGCACGACGGCCGCAGCCAACTGGAGGCGCTGCGCGAGCGCACCGCGGCGGTGATC
CGCAGCACCCGCGGCGAGTACGAGCACGAACTGTCGCCGCACTGGCGCGGCCTCAGCGTGATGCGCGACCGC
CTTTCGCAATACCTGCCGCCGTGGGTCGGTATCGCCATCGGCCTGGCCTTGCTGCTGGCCTTGCTGTTCGGC
CTGCGGATGAAGCTGGCCGCCGACGCCGAGCCGGTGTTCAAGCGCATCCACGCCATCGGCGAGATCCCGGTG
CAGGCCATCGACCGCCCAGCGGTGCAGCCGCGGGTGATCGAACGGCCACGCCTGGCGCGCTTCCTCGCAGAC
GACATCAAGGCCCAGCGGGTGGCGGTGGAGGACGCCGTCGACCGCTCGGTGGTGACCATCCGCGGCGACGAG
CTGTTCGCCAGCGCCAGCGCCAGCGTGCGCGACGAGTTCCAGCCGCTGCTGCTGCGCATCGCCGACGCCCTG
CGCAAGGTCAAGGGCCAGGTGCTGGTCACCGGCCATAGCGACAACCGGCCGATCGCCACGCTGCGCTACCCG
TCCAACTGGAAACTGTCCCAGGCCCGCGCCCAGGAGGTCGCCGACCTGCTCGGCGCGACCACCGGCGACGCC
GGCCGCTTCACCGCCGAAGGGCGCAGCGACACCGAGCCGGTGGCGACCAACGCCAGCGCCGAAGGCCGCGCA
CGCAACCGCCGGGTGGAAATCACCGTATTCGCGGAGGGCGCGCAATGA
Translation:
MPRPGGRAPEPAGGPRGGDPYTPPPMASLAPLSGRGDGLNPLEQAAGPLLAMLTRLRNTIAHPAPASLRAQL
LGYLRQFEEKARQAGVAPDEVMLARYVLCTALDEAVLSTPWGSTSDWGKQSLLITLHNEAWGGEKVFQLLEH
CLQNPHQRLHLLELLYLCTSLGFEGRYRVMHDGRSQLEALRERTAAVIRSTRGEYEHELSPHWRGLSVMRDR
LSQYLPPWVGIAIGLALLLALLFGLRMKLAADAEPVFKRIHAIGEIPVQAIDRPAVQPRVIERPRLARFLAD
DIKAQRVAVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRKVKGQVLVTGHSDNRPIATLRYP
SNWKLSQARAQEVADLLGATTGDAGRFTAEGRSDTEPVATNASAEGRARNRRVEITVFAEGAQ*
AnnotationID:7006GeneID:7006
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 12:12:59
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1360,pfam00691
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>emb|CAE31314.1| (BX640439) putative outer membrane protein [Bordetella
           bronchiseptica]
          Length = 426

 Score =  366 bits (939), Expect = e-100
 Identities = 199/407 (48%), Positives = 253/407 (62%), Gaps = 5/407 (1%)








 
Structural Features:
COG1360, MotB, Flagellar motor protein [Cell motility and secretion]
CD-Length = 244 residues,  97.5% aligned
Score =  154 bits (391), Expect = 1e-38
Identities = 59/239 (24%), Positives = 93/239 (38%), Gaps = 3/239 (1%)

pfam00691, OmpA, OmpA family. 
CD-Length = 96 residues, 100.0% aligned
Score = 78.8 bits (194), Expect = 1e-15
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 5/100 (5%)






   
Genomic Context:






   
Comment:
GeneID7006 (PA14_00920) replaced by GeneID7367 (PA14_00925).


















    ReferenceID:13692




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31087




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33429




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:7006_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7006
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8062
                           PA0078_tr
                           translation of PA0078
                           449
                           94.20
                           94.20
                           26
                           2168.0
     

     
     
203092
                           gb|AAG03468.1|AE004447_1
                           (AE004447) hypothetical protein PA0078 [Pseudomonas aeruginosa PAO1]
                           449
                           94.20
                           94.20
                           26
                           2168.0
     

     
     
203093
                           emb|CAE31314.1|
                           (BX640439) putative outer membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           435
                           46.20
                           58.62
                           21
                           940.0
     

     
     
203094
                           emb|CAE40138.1|
                           (BX640425) putative outer membrane protein [Bordetella parapertussis]
                           435
                           46.20
                           58.62
                           21
                           940.0
     

     
     
203096
                           gb|AAG05057.1|AE004594_9
                           (AE004594) hypothetical protein PA1668 [Pseudomonas aeruginosa PAO1]
                           449
                           24.72
                           34.07
                           186
                           474.0
     

     






      

          
GC ORFID: 50008How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5895305Stop: 5894034

          
Length: 1272


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0078 translation of PA0078Homolog Bit Score 839.0

          
Other Homologs:  t_PA0078 translation of PA0078 (BLASTP 839), t_PA1668 translation of PA1668 (BLASTP 186)

          
GC ORF Sequence

           
ATGCCGCGTCCCGGCGGCCGCGCCCCGGAACCGGCCGGCGGCCCCCGCGGCGGCGATCCCTACACGCCGCCG 
CCGATGGCCAGCCTGGCGCCGCTGAGCGGCCGCGGCGACGGCCTCAACCCGCTGGAGCAGGCCGCCGGCCCA 
CTGCTGGCGATGCTCACCCGCCTGCGCAACACCATCGCCCATCCGGCGCCGGCCAGCCTGCGCGCGCAACTG 
CTCGGCTACCTGCGCCAGTTCGAGGAGAAGGCACGCCAGGCCGGCGTGGCGCCGGACGAAGTGATGCTGGCG 
CGCTACGTGCTCTGCACCGCCCTCGACGAAGCGGTGCTCAGCACGCCGTGGGGCAGCACCAGCGACTGGGGC 
AAGCAGAGCCTGCTGATCACCCTGCACAACGAGGCCTGGGGCGGCGAGAAGGTCTTCCAGTTGCTCGAACAC 
TGCCTGCAGAACCCGCACCAGCGCCTGCACCTGCTGGAGCTGCTGTACCTGTGCACCAGCCTCGGCTTCGAA 
GGCCGCTACCGGGTCATGCACGACGGCCGCAGCCAACTGGAGGCGCTGCGCGAGCGCACCGCGGCGGTGATC 
CGCAGCACCCGCGGCGAGTACGAGCACGAACTGTCGCCGCACTGGCGCGGCCTCAGCGTGATGCGCGACCGC 
CTTTCGCAATACCTGCCGCCGTGGGTCGGTATCGCCATCGGCCTGGCCTTGCTGCTGGCCTTGCTGTTCGGC 
CTGCGGATGAAGCTGGCCGCCGACGCCGAGCCGGTGTTCAAGCGCATCCACGCCATCGGCGAGATCCCGGTG 
CAGGCCATCGACCGCCCAGCGGTGCAGCCGCGGGTGATCGAACGGCCACGCCTGGCGCGCTTCCTCGCAGAC 
GACATCAAGGCCCAGCGGGTGGCGGTGGAGGACGCCGTCGACCGCTCGGTGGTGACCATCCGCGGCGACGAG 
CTGTTCGCCAGCGCCAGCGCCAGCGTGCGCGACGAGTTCCAGCCGCTGCTGCTGCGCATCGCCGACGCCCTG 
CGCAAGGTCAAGGGCCAGGTGCTGGTCACCGGCCATAGCGACAACCGGCCGATCGCCACGCTGCGCTACCCG 
TCCAACTGGAAACTGTCCCAGGCCCGCGCCCAGGAGGTCGCCGACCTGCTCGGCGCGACCACCGGCGACGCC 
GGCCGCTTCACCGCCGAAGGGCGCAGCGACACCGAGCCGGTGGCGACCAACGCCAGCGCCGAAGGCCGCGCA 
CGCAACCGCCGGGTGGAAATCACCGTATTCGCGGAGGGCGCGCAATGA