ViewGene
Locus Name:
GeneID:
Location:

GeneID:7004
TrivialName: PA14_00870
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00870
PAO1 Ortholog Locus:
Sequence Length:2382
Protein Length:793
Start: 87026
Stop: 84645
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaced by GeneID7401 (PA14_00875). Homology: gb|AAG03464.1|AE004446_12 (AE004446) serine/threonine protein kinase PpkA [Pseudomonas aeruginosa PAO1]
Identities = 786/793 (99%), Positives = 788/793 (99%)
Sequence:
TTGCTGGCCAAGGACCCGGCCGAGCGCTTCCCCACCGCCGGCGCGTTGATCGCCGCCCTCGACCGCCTGGCG
CCGAGCGCCCTGGAAGCCACCCAGATCCGTCCGCTGGCGACGCCGCAGGGCTCGCCGCGAGCGAGCAACCCG
CCGCCGGCCGAACCCGCGCCCCTGCCGCCCGCCGACCTCGGCGGCCTGCAACCGGTGTCGATCCAGTTGCCG
CCGGTCACGCCCAGCGCCGGCGGCGCCACGCCGCCTCCGCCTCCGCCGTCGCAAGCGGCGAAACCGCCATCG
CCCCCGCCGCCTCCGTTGCCGCCGGCGAAGCCACGTGCCGGCGGCAGCCGCACGCCGTTGATCGCCGCCGCC
GCGGCCGCCGTGCTCCTGGCGATCGGCGGCGGCGCCTGGTGGCTGCTGGGCTCGGACGACGCACCGAGCCCT
GTCGATCCAGCGCCGCTGGGACAGACGCCGACGGACAAGCCGCAGCAGCAGACCCCAGTGGCCGATGCCGAA
CAGGACGGCGGCGAGCGTCCGCTGCTGATGCCGGGCAAGAAGACGCTGTTCCAGCGCGTCCTGACCAAACCC
GGCGCGGCCATCTCCGCCGAGGCTGGCGGCCCGCCCCGGGCCGGCGCGGTGCCGGCCTTCTCGGTGCTCTAC
GTGTACGCCCGCAAGCAGGTCGGCGGCAGCCCCTGGCTGCGCGTCGGCGCCTCCAGCAACGGCGAGGGCGAC
GGCTGGCTGCCGGCCAGCGCGGTGAGCGACTGGAAGCAGAGCCTGGTGCTGAAGTTCACCGAACGCTCCGGC
CGCGCGCCGGTGATGTTCCTCAACAGCGCCGAGCAGGTCGAACGCCTGCTCGGCGATACCCGCGCGGCGCGC
GACACCCTGACCCAGGCGGTGGACCACAAGGGCGATCCGCAGGTGGTCGCGGTCGAGCCCAACGACCGGGCG
ATCCCCCAGGACCAGTTCTACCTGCTGCCGATCTTCGACTCGAAGGAGAGCTTCGACGCCGACGGCCAGCCG
GCGCAGTTGCTGGAGGTCGCTTCGATCGACCCCGGCGGCAGCGCCACGGCACCCCAGGCGCCGGGCCAGGCC
GGGCGGGGCGGCGCCAGCGGCGCGGCGAGCGACACCTTCCGCACCGGCATCGTCCTGGTGGTGGACACCTCG
GTGTCGATGCAGCCCTACATCGACCGCGTGCGCGAGGTGATCGACGGCCTGCAGCGGCAGATCGGCGAGCGC
GGCGACCTGGACAAGGTCAGCTTCGGCCTGGTCGGCTTCCGCAACAACACCGACAAGACCCCCGGCCTGGAA
TACGTCAGCAAGACCCTGGTGCCGCTGCAACCGGGCAACGACGCGCAGCGCTTCGCCGAGTTGAGCAGCCAG
GTGCGCGCCACCGACGTCTCCAGCCACTCGTTCAACGAAGACGCCTTCGCCGGGATCATGCAGGCGGTCGAC
GAAATGGACTGGTCGCCCTACGCCGGGCGCGTGGTGCTGCTGGTCACCGACGCCGGCGCGCTGCGCAAGAAC
GACCCGCTCGGGCGCACCCAGATGAACGAGGCCGAGGTCCGCCAGGCGGCGCTGCGCAAGGGCGTGAAGATC
TATGCCCTGCACCTGCGCACCCCGGCCGGGAAGAACAACCACGGCTACGCCGAGCAGCAGTACCGCAGCCTC
ACCGCCGACGCCAACCCGAAGATCGCCGACCTCTACATCCCGGTGGCCGGCGGCGAGGTGAACGCCTTCGGC
AACACGGTGAAGGAGATCGGCACGGTGTTCGCCGACCTGGTCCACGACGCCGGCAACCGCAAGCCGCAGGCG
CCGCGCTTCGACGCCGCGCCAAGCGTGGCGAGCAAGTCGGCGGCCATCGGCTACGCCATGCAGATGGAATTC
CTCGGTCGCCGCGACCCGGTGCGCGCGCCGCAGGTCGTCACCGCCTGGACCGCCGACCGCGACCTGACCAAC
CCGGCGCTGCCGGCGTTCCAGGTCTGCGTGCTGCTGAGCAAGCTGCAACTCAACGAACTGCAACAGTCGCTG
AAACTGATCGTCGACGCGGCCAAGCGCACCCAGACCTCGCCCAAGGACTTCTTCCAGGAAATCGCCAGCGCC
AGCGCCTACATGAGCCGCGACCCGGCGCAACTGGTGAAGGGCAGCAACCTGGCGCAGAGCGGCGTGCTCGGC
GAATACCTGGAAGGCCTGCCGTACCGCAGCAAGTCGCTGAACATGACCCAGGACCTCTGGCTGTCGCTGAGC
GTCGCCGAACAGCAGGACTTCATCGACGAACTGGAGTCGAAGATCCGCCTCTACGAAACCTTCCACAACGAC
GTCGCCAACTGGGTCCGGTTCGGCGACGCCGACGCCGGCGACGCGCTGTACCGCGTGCCGCTGTCGACGCTG
CCATGA
Translation:
MLAKDPAERFPTAGALIAALDRLAPSALEATQIRPLATPQGSPRASNPPPAEPAPLPPADLGGLQPVSIQLP
PVTPSAGGATPPPPPPSQAAKPPSPPPPPLPPAKPRAGGSRTPLIAAAAAAVLLAIGGGAWWLLGSDDAPSP
VDPAPLGQTPTDKPQQQTPVADAEQDGGERPLLMPGKKTLFQRVLTKPGAAISAEAGGPPRAGAVPAFSVLY
VYARKQVGGSPWLRVGASSNGEGDGWLPASAVSDWKQSLVLKFTERSGRAPVMFLNSAEQVERLLGDTRAAR
DTLTQAVDHKGDPQVVAVEPNDRAIPQDQFYLLPIFDSKESFDADGQPAQLLEVASIDPGGSATAPQAPGQA
GRGGASGAASDTFRTGIVLVVDTSVSMQPYIDRVREVIDGLQRQIGERGDLDKVSFGLVGFRNNTDKTPGLE
YVSKTLVPLQPGNDAQRFAELSSQVRATDVSSHSFNEDAFAGIMQAVDEMDWSPYAGRVVLLVTDAGALRKN
DPLGRTQMNEAEVRQAALRKGVKIYALHLRTPAGKNNHGYAEQQYRSLTADANPKIADLYIPVAGGEVNAFG
NTVKEIGTVFADLVHDAGNRKPQAPRFDAAPSVASKSAAIGYAMQMEFLGRRDPVRAPQVVTAWTADRDLTN
PALPAFQVCVLLSKLQLNELQQSLKLIVDAAKRTQTSPKDFFQEIASASAYMSRDPAQLVKGSNLAQSGVLG
EYLEGLPYRSKSLNMTQDLWLSLSVAEQQDFIDELESKIRLYETFHNDVANWVRFGDADAGDALYRVPLSTL
P*
AnnotationID:7004GeneID:7004
AnnotatorUID: danlee
Modification Date/Time: 2006-03-06 17:05:33
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:16730




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31083




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33428




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:7004_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7004
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8061
                           PA0074_tr
                           translation of PA0074
                           1032
                           76.25
                           76.35
                           239
                           4046.0
     

     
     
203090
                           gb|AAG03464.1|AE004446_12
                           (AE004446) serine/threonine protein kinase PpkA [Pseudomonas aeruginosa PAO1]
                           1032
                           76.25
                           76.35
                           239
                           4046.0
     

     
     
203091
                           gb|AAD03499.2|
                           (AF035395) serine/threonine protein kinase PpkA [Pseudomonas aeruginosa]
                           1032
                           76.16
                           76.35
                           239
                           4044.0
     

     






      

          
GC ORFID: 50006How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5888363Stop: 5885982

          
Length: 2382


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0074 translation of PA0074Homolog Bit Score 1563.0

          
Other Homologs:  t_PA0074 translation of PA0074 (BLASTP 1563), t_PA0074 translation of PA0074 (BLASTP 147)

          
GC ORF Sequence

           
TTGCTGGCCAAGGACCCGGCCGAGCGCTTCCCCACCGCCGGCGCGTTGATCGCCGCCCTCGACCGCCTGGCG 
CCGAGCGCCCTGGAAGCCACCCAGATCCGTCCGCTGGCGACGCCGCAGGGCTCGCCGCGAGCGAGCAACCCG 
CCGCCGGCCGAACCCGCGCCCCTGCCGCCCGCCGACCTCGGCGGCCTGCAACCGGTGTCGATCCAGTTGCCG 
CCGGTCACGCCCAGCGCCGGCGGCGCCACGCCGCCTCCGCCTCCGCCGTCGCAAGCGGCGAAACCGCCATCG 
CCCCCGCCGCCTCCGTTGCCGCCGGCGAAGCCACGTGCCGGCGGCAGCCGCACGCCGTTGATCGCCGCCGCC 
GCGGCCGCCGTGCTCCTGGCGATCGGCGGCGGCGCCTGGTGGCTGCTGGGCTCGGACGACGCACCGAGCCCT 
GTCGATCCAGCGCCGCTGGGACAGACGCCGACGGACAAGCCGCAGCAGCAGACCCCAGTGGCCGATGCCGAA 
CAGGACGGCGGCGAGCGTCCGCTGCTGATGCCGGGCAAGAAGACGCTGTTCCAGCGCGTCCTGACCAAACCC 
GGCGCGGCCATCTCCGCCGAGGCTGGCGGCCCGCCCCGGGCCGGCGCGGTGCCGGCCTTCTCGGTGCTCTAC 
GTGTACGCCCGCAAGCAGGTCGGCGGCAGCCCCTGGCTGCGCGTCGGCGCCTCCAGCAACGGCGAGGGCGAC 
GGCTGGCTGCCGGCCAGCGCGGTGAGCGACTGGAAGCAGAGCCTGGTGCTGAAGTTCACCGAACGCTCCGGC 
CGCGCGCCGGTGATGTTCCTCAACAGCGCCGAGCAGGTCGAACGCCTGCTCGGCGATACCCGCGCGGCGCGC 
GACACCCTGACCCAGGCGGTGGACCACAAGGGCGATCCGCAGGTGGTCGCGGTCGAGCCCAACGACCGGGCG 
ATCCCCCAGGACCAGTTCTACCTGCTGCCGATCTTCGACTCGAAGGAGAGCTTCGACGCCGACGGCCAGCCG 
GCGCAGTTGCTGGAGGTCGCTTCGATCGACCCCGGCGGCAGCGCCACGGCACCCCAGGCGCCGGGCCAGGCC 
GGGCGGGGCGGCGCCAGCGGCGCGGCGAGCGACACCTTCCGCACCGGCATCGTCCTGGTGGTGGACACCTCG 
GTGTCGATGCAGCCCTACATCGACCGCGTGCGCGAGGTGATCGACGGCCTGCAGCGGCAGATCGGCGAGCGC 
GGCGACCTGGACAAGGTCAGCTTCGGCCTGGTCGGCTTCCGCAACAACACCGACAAGACCCCCGGCCTGGAA 
TACGTCAGCAAGACCCTGGTGCCGCTGCAACCGGGCAACGACGCGCAGCGCTTCGCCGAGTTGAGCAGCCAG 
GTGCGCGCCACCGACGTCTCCAGCCACTCGTTCAACGAAGACGCCTTCGCCGGGATCATGCAGGCGGTCGAC 
GAAATGGACTGGTCGCCCTACGCCGGGCGCGTGGTGCTGCTGGTCACCGACGCCGGCGCGCTGCGCAAGAAC 
GACCCGCTCGGGCGCACCCAGATGAACGAGGCCGAGGTCCGCCAGGCGGCGCTGCGCAAGGGCGTGAAGATC 
TATGCCCTGCACCTGCGCACCCCGGCCGGGAAGAACAACCACGGCTACGCCGAGCAGCAGTACCGCAGCCTC 
ACCGCCGACGCCAACCCGAAGATCGCCGACCTCTACATCCCGGTGGCCGGCGGCGAGGTGAACGCCTTCGGC 
AACACGGTGAAGGAGATCGGCACGGTGTTCGCCGACCTGGTCCACGACGCCGGCAACCGCAAGCCGCAGGCG 
CCGCGCTTCGACGCCGCGCCAAGCGTGGCGAGCAAGTCGGCGGCCATCGGCTACGCCATGCAGATGGAATTC 
CTCGGTCGCCGCGACCCGGTGCGCGCGCCGCAGGTCGTCACCGCCTGGACCGCCGACCGCGACCTGACCAAC 
CCGGCGCTGCCGGCGTTCCAGGTCTGCGTGCTGCTGAGCAAGCTGCAACTCAACGAACTGCAACAGTCGCTG 
AAACTGATCGTCGACGCGGCCAAGCGCACCCAGACCTCGCCCAAGGACTTCTTCCAGGAAATCGCCAGCGCC 
AGCGCCTACATGAGCCGCGACCCGGCGCAACTGGTGAAGGGCAGCAACCTGGCGCAGAGCGGCGTGCTCGGC 
GAATACCTGGAAGGCCTGCCGTACCGCAGCAAGTCGCTGAACATGACCCAGGACCTCTGGCTGTCGCTGAGC 
GTCGCCGAACAGCAGGACTTCATCGACGAACTGGAGTCGAAGATCCGCCTCTACGAAACCTTCCACAACGAC 
GTCGCCAACTGGGTCCGGTTCGGCGACGCCGACGCCGGCGACGCGCTGTACCGCGTGCCGCTGTCGACGCTG 
CCATGA