ViewGene

Locus Name:
GeneID:
Location:

GeneID:7003
TrivialName: PA14_00840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00840
PAO1 Ortholog Locus:
Sequence Length:1476
Protein Length:491
Start: 83936
Stop: 82461
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA55649.1| (X79027) unknown [Microbacterium ammoniaphilum]
Identities = 116/352 (32%), Positives = 128/352 (36%), Gaps = 80/352 (22%)
Sequence:
TTGGCTGATGCGCGCCGGCCTGCTGCTCTCGCTGGCCTGGGCCGACTATCGCGGCGAGGCGCGCCTGTCGCT
CTGCGCGATCTTCGCCCTGGCGGCGGTGATCACCCCGCTGCTGGTGCTGTTCGGCCTCAAGTACGGCCTGGT
CAGCACCCTCACCGAGCGGCTGGAGCGCGCGCCTTCGGTGCGCGAGATCATTCCGGTCGGCGGCGCCCGCTA
CCGTGCCGAGGACATCGCCGCCCTGGCCGCACGCGCGGATGTCGCCTTCGCCGTGCCGCGCACCCGGCAGAT
CGCCGCCACCGCCGACCTCAGCGGCGGCGGCGAGACCGCCCTGAGCGTCGAGATGATTCCCAGCGCCGCCGG
CGACCCGCTGCTGGCCGGCCTGCCGCAACCCGACCGGCCGACCCGCGTGGTGCTCAGCCACGGCGCCGCGGA
AAAACTCGGCGCCCAGCCTGGCGAGCGCATCGTCGCGCGCATCGGCCGGCGCATGGATGGCCAGGCACAGAG
CCAGCGCCTGGAGCTGGAAGTGCTCGCGGTGCTGCCGCAGGAGCGTTTCGCCCGCGACGCGCTGTTCGCCCC
GCTAGCCCTGCTGGAAGCCGCCGAGGACTATCGCGACGGTCGCGCGGTGGCCGCCTACGGCTGGCCGGGGAA
GGCCGGCGAGACCCCGCGCGCACGCATCTACCCGGGCTTCCGCCTGTACGCCCGAGACCTCGATGCGGTGGA
AGGGCTGCGCCGGCACTTCGTCGCGAGTGGCGTGGAAGTCGCCACCCAGGCCGAGGCCATCGCCCAGGTGCG
CAGCCTCAGCCGCAACCTCGGCCTGGTGTTCTGGATCGTCGCCGCGCTGGCCATCGGCGGTGCCTTCGCGGC
CATCGCCGCCAGCAGCCTGGCCGCCGTCGAACGCAAGCGCCGCGCCCTGGCGGTGCTGCGTCTGCTGGGCTT
CCCGACCGCCGCGCTGGTCGGCTTCGTCATGTTCCTGGCGCTGTTCAGCGCCGTCTTCGGCCTGTTCCTCGC
CGGGCTGCTGTACGCCGCCACGGCCGGCGCGCTGAACCACCTGTTCGACAACCAGAGCGGCGAGTTCGTCTG
CCGCCTGCTGCCCAGCCACTACCTGACGGCGCTGCTCGCCACGCTGCTGTGCAGCGTCCTGGCCGCCGCCAG
CGGCGGCTGGCGCGCGGCGCGGATCGAAGCCGCAGAGGGATTACGCGATGTTTGAGAAAGCCATTCTTCCGC
TCGCCCTCGGCGCCTGCCTGGCATTTGCCGCGCCGGCCTGGGCCGAAGGCGACTCGCCGGACAATCCCAAGC
CGCTGGCCGACGACGTCGCCCTGCCGCTGCCGTGTGGCGGCGAGATGGTCTTCCGGCATGTCTACGTACTCG
CCGAAGGCGCCCTCGACGATCGCGAGGTCAACCTCGGCTACGCCTTCAACGAAGGCGAGGCGGGCTACCAGC
AGTCGTTCATCTCCGGCTACCGGCGCGACTACGTGA
Translation:
MADARRPAALAGLGRLSRRGAPVALRDLRPGGGDHPAAGAVRPQVRPGQHPHRAAGARAFGARDHSGRRRPL
PCRGHRRPGRTRGCRLRRAAHPADRRHRRPQRRRRDRPERRDDSQRRRRPAAGRPAATRPADPRGAQPRRRG
KTRRPAWRAHRRAHRPAHGWPGTEPAPGAGSARGAAAGAFRPRRAVRPASPAGSRRGLSRRSRGGRLRLAGE
GRRDPARTHLPGLPPVRPRPRCGGRAAPALRREWRGSRHPGRGHRPGAQPQPQPRPGVLDRRRAGHRRCLRG
HRRQQPGRRRTQAPRPGGAASAGLPDRRAGRLRHVPGAVQRRLRPVPRRAAVRRHGRRAEPPVRQPERRVRL
PPAAQPLPDGAARHAAVQRPGRRQRRLARGADRSRRGITRCLRKPFFRSPSAPAWHLPRRPGPKATRRTIPS
RWPTTSPCRCRVAARWSSGMSTYSPKAPSTIARSTSATPSTKARRATSSRSSPATGATT*
AnnotationID:7003GeneID:7003
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:57
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:16728
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:31081
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 50005How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5885273Stop: 5883798
Length: 1476
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGGCTGATGCGCGCCGGCCTGCTGCTCTCGCTGGCCTGGGCCGACTATCGCGGCGAGGCGCGCCTGTCGCT
CTGCGCGATCTTCGCCCTGGCGGCGGTGATCACCCCGCTGCTGGTGCTGTTCGGCCTCAAGTACGGCCTGGT
CAGCACCCTCACCGAGCGGCTGGAGCGCGCGCCTTCGGTGCGCGAGATCATTCCGGTCGGCGGCGCCCGCTA
CCGTGCCGAGGACATCGCCGCCCTGGCCGCACGCGCGGATGTCGCCTTCGCCGTGCCGCGCACCCGGCAGAT
CGCCGCCACCGCCGACCTCAGCGGCGGCGGCGAGACCGCCCTGAGCGTCGAGATGATTCCCAGCGCCGCCGG
CGACCCGCTGCTGGCCGGCCTGCCGCAACCCGACCGGCCGACCCGCGTGGTGCTCAGCCACGGCGCCGCGGA
AAAACTCGGCGCCCAGCCTGGCGAGCGCATCGTCGCGCGCATCGGCCGGCGCATGGATGGCCAGGCACAGAG
CCAGCGCCTGGAGCTGGAAGTGCTCGCGGTGCTGCCGCAGGAGCGTTTCGCCCGCGACGCGCTGTTCGCCCC
GCTAGCCCTGCTGGAAGCCGCCGAGGACTATCGCGACGGTCGCGCGGTGGCCGCCTACGGCTGGCCGGGGAA
GGCCGGCGAGACCCCGCGCGCACGCATCTACCCGGGCTTCCGCCTGTACGCCCGAGACCTCGATGCGGTGGA
AGGGCTGCGCCGGCACTTCGTCGCGAGTGGCGTGGAAGTCGCCACCCAGGCCGAGGCCATCGCCCAGGTGCG
CAGCCTCAGCCGCAACCTCGGCCTGGTGTTCTGGATCGTCGCCGCGCTGGCCATCGGCGGTGCCTTCGCGGC
CATCGCCGCCAGCAGCCTGGCCGCCGTCGAACGCAAGCGCCGCGCCCTGGCGGTGCTGCGTCTGCTGGGCTT
CCCGACCGCCGCGCTGGTCGGCTTCGTCATGTTCCTGGCGCTGTTCAGCGCCGTCTTCGGCCTGTTCCTCGC
CGGGCTGCTGTACGCCGCCACGGCCGGCGCGCTGAACCACCTGTTCGACAACCAGAGCGGCGAGTTCGTCTG
CCGCCTGCTGCCCAGCCACTACCTGACGGCGCTGCTCGCCACGCTGCTGTGCAGCGTCCTGGCCGCCGCCAG
CGGCGGCTGGCGCGCGGCGCGGATCGAAGCCGCAGAGGGATTACGCGATGTTTGAGAAAGCCATTCTTCCGC
TCGCCCTCGGCGCCTGCCTGGCATTTGCCGCGCCGGCCTGGGCCGAAGGCGACTCGCCGGACAATCCCAAGC
CGCTGGCCGACGACGTCGCCCTGCCGCTGCCGTGTGGCGGCGAGATGGTCTTCCGGCATGTCTACGTACTCG
CCGAAGGCGCCCTCGACGATCGCGAGGTCAACCTCGGCTACGCCTTCAACGAAGGCGAGGCGGGCTACCAGC
AGTCGTTCATCTCCGGCTACCGGCGCGACTACGTGA