ViewGene
Locus Name:
GeneID:
Location:

GeneID:6985
TrivialName: PA14_73270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73270
PAO1 Ortholog Locus:
Sequence Length:1674
Protein Length:557
Start: 6523861
Stop: 6525534
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN83093.1|AE016769_208 (AE016769) Hypothetical protein [Escherichia coli CFT073]
Identities = 237/547 (43%), Positives = 318/547 (58%), Gaps = 3/547 (0%)
Sequence:
TTGGGTGGCCTTGAACTTCTCGATGCCGGCCTTGATGCCCGCGTCGATTTCGTCGTTGAAGTCACCTTTCTC
GTTGATCTTCGCCAGCAGAGCGGCATGCTCGCGCTGGAAGTAGGAGATCAACGCCTGCTCGAAGCTACCAAC
CTTGGCGATTTCGACGTCCTGCAGGAAGCCACGCTCGGCGGCATACAGGGACAGCGACATCTCGGCGATCGA
CATCGGCGCGTACTGCTTCTGCTTCATCAGCTCGGTAACGCGCTGACCATGCTCCAGCTGCTTGCGGGTCGC
TTCGTCCAGGTCCGAGGCGAACTGGGCGAAGGCCGCCAGTTCACGGTACTGGGCCAGAGCGGTACGAATGCC
GCCGGACAGCTTCTTGATGATCTTGGTCTGGGCCGCGCCACCTACGCGGGATACCGAGATACCGGCGTTGAC
GGCCGGACGGATACCCGAGTTGAACATGGCGGATTCCAGGAAGATCTGGCCGTCGGTGATCGAGATCACGTT
GGTCGGAACGAACGCGGAAACGTCGCCGGCCTGGGTCTCGATGATCGGCAGCGCGGTCAGCGAGCCGGTCTT
GCCGGTCACGGCGCCGTTGGTGAACTTCTCGACATACTCTTCGGAAACGCGGGAAGCGCGCTCCAGCAGACG
GCTGTGGAGATAGAACACGTCGCCCGGGTAGGCTTCGCGGCCCGGCGGACGGCGCAGCAGCAGGGAGATCTG
GCGATAAGCCACGGCCTGCTTGGACAGGTCGTCGTAGACGATCAGGGCGTCTTCACCGCGATCACGGAAGTA
TTCGCCCATGGTGCAACCGGAGTACGGCGCCAGGTATTGCAGGGCGGCGGACTCGGAAGCGCTGGCGGCGAC
CACGATGGTGTTGGCCAGGGCGCCGTTCTCTTCCAGCTTGCGTACGACGTTGGCGATAGTGGACTGCTTCTG
GCCGATGGCCACGTAGACGCACTTAATGCCGCTGTCTTTCTGGTTGATGATGGCGTCGACCGCGAGGGCGGT
CTTGCCGATCTGGCGGTCGCCGATGATCAGCTCGCGCTGGCCACGGCCTACCGGGATCATGGCGTCGACCGA
CTTGTAGCCGGTCTGTACCGGCTGGTCTACCGACTTACGCCAGATCACGCCCGGAGCGACCTTCTCGACCGC
GTCGGTGGCCTTGGCGTCGATCGGGCCTTTGCCGTCGATCGGATTGCCCAGTGCATCGACTACGCGACCCAG
CAGTTCCGGACCAACCGGAACCTCCAGGATGCGCCCGGTGCACTTGGCGTTCATGCCTTCGGCGAGGCCCTG
GTATTCACCCAGGACCACGGCACCCACGGAATCCTGCTCCAGGTTCAGCGCCATACCGTAGACGCCGCCCGG
GAACTCGATCATCTCGCCGTACATGACGTCGGCCAGACCGTAGATGCGCACGATACCGTCGGACACGCTGAC
GATGGTGCCTTCGTTTCGTGCTTGGGAGGCGACGTCGAGTTTCTCGATGCGCCCCTTGATGATTTCACTAAT
TTCGGAAGGATTGAGTTGCTGCATGCCGCTGCCCCTTCAAACTCAAGATTTCAACGCTTCGGCCAGTTTCGC
GAGCTTGCCGCGCACCGAGCCATCGATTACCAAGTCACCGGCGCGAATGATCACGCCGCCGATCAGGCTCGC
GTCTTCCGACGCATGTAG
Translation:
MGGLELLDAGLDARVDFVVEVTFLVDLRQQSGMLALEVGDQRLLEATNLGDFDVLQEATLGGIQGQRHLGDR
HRRVLLLLHQLGNALTMLQLLAGRFVQVRGELGEGRQFTVLGQSGTNAAGQLLDDLGLGRATYAGYRDTGVD
GRTDTRVEHGGFQEDLAVGDRDHVGRNERGNVAGLGLDDRQRGQRAGLAGHGAVGELLDILFGNAGSALQQT
AVEIEHVARVGFAARRTAQQQGDLAISHGLLGQVVVDDQGVFTAITEVFAHGATGVRRQVLQGGGLGSAGGD
HDGVGQGAVLFQLAYDVGDSGLLLADGHVDALNAAVFLVDDGVDREGGLADLAVADDQLALATAYRDHGVDR
LVAGLYRLVYRLTPDHARSDLLDRVGGLGVDRAFAVDRIAQCIDYATQQFRTNRNLQDAPGALGVHAFGEAL
VFTQDHGTHGILLQVQRHTVDAARELDHLAVHDVGQTVDAHDTVGHADDGAFVSCLGGDVEFLDAPLDDFTN
FGRIELLHAAAPSNSRFQRFGQFRELAAHRAIDYQVTGANDHAADQARVFRRM*
AnnotationID:6986GeneID:6985
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:16
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16716




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31046




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6985
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
203056
                           gb|AAN83093.1|AE016769_208
                           (AE016769) Hypothetical protein [Escherichia coli CFT073]
                           566
                           41.87
                           56.71
                           16
                           1050.0
     

     






      

          
GC ORFID: 49987How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5787550Stop: 5789223

          
Length: 1674


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene2959 related to: gi|18485596|ref|XP_083399.1| (XM_083399) similar to bellwether (H. sapiens) [Drosophila melanogaster]Homolog Bit Score 675.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2959 related to: gi|18485596|ref|XP_083399.1| (XM_083399) similar to bellwether (H. sapiens) [Drosophila melanogaster] (BLASTP 675)

          
GC ORF Sequence

           
TTGGGTGGCCTTGAACTTCTCGATGCCGGCCTTGATGCCCGCGTCGATTTCGTCGTTGAAGTCACCTTTCTC 
GTTGATCTTCGCCAGCAGAGCGGCATGCTCGCGCTGGAAGTAGGAGATCAACGCCTGCTCGAAGCTACCAAC 
CTTGGCGATTTCGACGTCCTGCAGGAAGCCACGCTCGGCGGCATACAGGGACAGCGACATCTCGGCGATCGA 
CATCGGCGCGTACTGCTTCTGCTTCATCAGCTCGGTAACGCGCTGACCATGCTCCAGCTGCTTGCGGGTCGC 
TTCGTCCAGGTCCGAGGCGAACTGGGCGAAGGCCGCCAGTTCACGGTACTGGGCCAGAGCGGTACGAATGCC 
GCCGGACAGCTTCTTGATGATCTTGGTCTGGGCCGCGCCACCTACGCGGGATACCGAGATACCGGCGTTGAC 
GGCCGGACGGATACCCGAGTTGAACATGGCGGATTCCAGGAAGATCTGGCCGTCGGTGATCGAGATCACGTT 
GGTCGGAACGAACGCGGAAACGTCGCCGGCCTGGGTCTCGATGATCGGCAGCGCGGTCAGCGAGCCGGTCTT 
GCCGGTCACGGCGCCGTTGGTGAACTTCTCGACATACTCTTCGGAAACGCGGGAAGCGCGCTCCAGCAGACG 
GCTGTGGAGATAGAACACGTCGCCCGGGTAGGCTTCGCGGCCCGGCGGACGGCGCAGCAGCAGGGAGATCTG 
GCGATAAGCCACGGCCTGCTTGGACAGGTCGTCGTAGACGATCAGGGCGTCTTCACCGCGATCACGGAAGTA 
TTCGCCCATGGTGCAACCGGAGTACGGCGCCAGGTATTGCAGGGCGGCGGACTCGGAAGCGCTGGCGGCGAC 
CACGATGGTGTTGGCCAGGGCGCCGTTCTCTTCCAGCTTGCGTACGACGTTGGCGATAGTGGACTGCTTCTG 
GCCGATGGCCACGTAGACGCACTTAATGCCGCTGTCTTTCTGGTTGATGATGGCGTCGACCGCGAGGGCGGT 
CTTGCCGATCTGGCGGTCGCCGATGATCAGCTCGCGCTGGCCACGGCCTACCGGGATCATGGCGTCGACCGA 
CTTGTAGCCGGTCTGTACCGGCTGGTCTACCGACTTACGCCAGATCACGCCCGGAGCGACCTTCTCGACCGC 
GTCGGTGGCCTTGGCGTCGATCGGGCCTTTGCCGTCGATCGGATTGCCCAGTGCATCGACTACGCGACCCAG 
CAGTTCCGGACCAACCGGAACCTCCAGGATGCGCCCGGTGCACTTGGCGTTCATGCCTTCGGCGAGGCCCTG 
GTATTCACCCAGGACCACGGCACCCACGGAATCCTGCTCCAGGTTCAGCGCCATACCGTAGACGCCGCCCGG 
GAACTCGATCATCTCGCCGTACATGACGTCGGCCAGACCGTAGATGCGCACGATACCGTCGGACACGCTGAC 
GATGGTGCCTTCGTTTCGTGCTTGGGAGGCGACGTCGAGTTTCTCGATGCGCCCCTTGATGATTTCACTAAT 
TTCGGAAGGATTGAGTTGCTGCATGCCGCTGCCCCTTCAAACTCAAGATTTCAACGCTTCGGCCAGTTTCGC 
GAGCTTGCCGCGCACCGAGCCATCGATTACCAAGTCACCGGCGCGAATGATCACGCCGCCGATCAGGCTCGC 
GTCTTCCGACGCATGTAG