ViewGene

Locus Name:
GeneID:
Location:

GeneID:6976
TrivialName: PA14_72830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72830
PAO1 Ortholog Locus:
Sequence Length:225
Protein Length:74
Start: 6486543
Stop: 6486767
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08905.1|AE004964_8 (AE004964) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 67/67 (100%), Positives = 67/67 (100%)
Sequence:
ATGGGCCCGCGGCGGTCGGCGAGTGGTCGGCTGGAGGGGCAAGGCGCCCTCTACCGACTGCGCAGCGAAGGC
CTGGGCGCCGGCTGCAGCCTGCTGGTATGGCAGGAAGGCATCGACCTGCGAGTGGTGGAGAGCCTTGGCGGG
GACTGCCAGGGTTACGGCGGCATGGGCATCGCCGCCGCCGGTAACTGGGTGAAGATATCCAGTCAGGCCAGG
GACGACTGA
Translation:
MGPRRSASGRLEGQGALYRLRSEGLGAGCSLLVWQEGIDLRVVESLGGDCQGYGGMGIAAAGNWVKISSQAR
DD*
AnnotationID:6977GeneID:6976
AnnotatorUID: danlee
Modification Date/Time: 2006-02-08 16:04:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits at any threshold.
Genomic Context:
Comment:
Confirmed frame-shift results in PAO1 PA5520 sequence spit into two overlapping ORFS: 
PA14_72820 (GeneID 4154) and PA14_72830 (GeneID 6976).
ReferenceID:13637
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:31028
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6976

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
8055 PA5520_tr translation of PA5520 247 27.93 27.93 173 349.0
203051 gb|AAG08905.1|AE004964_8 (AE004964) hypothetical protein PA5520 [Pseudomonas aeruginosa PAO1] 247 27.93 27.93 173 349.0
GC ORFID: 49978How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5750232Stop: 5750456
Length: 225
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5520 translation of PA5520Homolog Bit Score 139.0
Other Homologs: t_PA5520 translation of PA5520 (BLASTP 139)
GC ORF Sequence
ATGGGCCCGCGGCGGTCGGCGAGTGGTCGGCTGGAGGGGCAAGGCGCCCTCTACCGACTGCGCAGCGAAGGC
CTGGGCGCCGGCTGCAGCCTGCTGGTATGGCAGGAAGGCATCGACCTGCGAGTGGTGGAGAGCCTTGGCGGG
GACTGCCAGGGTTACGGCGGCATGGGCATCGCCGCCGCCGGTAACTGGGTGAAGATATCCAGTCAGGCCAGG
GACGACTGA