ViewGene
Locus Name:
GeneID:
Location:

GeneID:6976
TrivialName: PA14_72830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72830
PAO1 Ortholog Locus:
Sequence Length:225
Protein Length:74
Start: 6486543
Stop: 6486767
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08905.1|AE004964_8 (AE004964) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 67/67 (100%), Positives = 67/67 (100%)
Sequence:
ATGGGCCCGCGGCGGTCGGCGAGTGGTCGGCTGGAGGGGCAAGGCGCCCTCTACCGACTGCGCAGCGAAGGC
CTGGGCGCCGGCTGCAGCCTGCTGGTATGGCAGGAAGGCATCGACCTGCGAGTGGTGGAGAGCCTTGGCGGG
GACTGCCAGGGTTACGGCGGCATGGGCATCGCCGCCGCCGGTAACTGGGTGAAGATATCCAGTCAGGCCAGG
GACGACTGA
Translation:
MGPRRSASGRLEGQGALYRLRSEGLGAGCSLLVWQEGIDLRVVESLGGDCQGYGGMGIAAAGNWVKISSQAR
DD*
AnnotationID:6977GeneID:6976
AnnotatorUID: danlee
Modification Date/Time: 2006-02-08 16:04:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:
Confirmed frame-shift results in PAO1 PA5520 sequence spit into two overlapping ORFS: 
PA14_72820 (GeneID 4154) and PA14_72830 (GeneID 6976).


















    ReferenceID:13637




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31028




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6976
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8055
                           PA5520_tr
                           translation of PA5520
                           247
                           27.93
                           27.93
                           173
                           349.0
     

     
     
203051
                           gb|AAG08905.1|AE004964_8
                           (AE004964) hypothetical protein PA5520 [Pseudomonas aeruginosa PAO1]
                           247
                           27.93
                           27.93
                           173
                           349.0
     

     






      

          
GC ORFID: 49978How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5750232Stop: 5750456

          
Length: 225


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5520 translation of PA5520Homolog Bit Score 139.0

          
Other Homologs:  t_PA5520 translation of PA5520 (BLASTP 139)

          
GC ORF Sequence

           
ATGGGCCCGCGGCGGTCGGCGAGTGGTCGGCTGGAGGGGCAAGGCGCCCTCTACCGACTGCGCAGCGAAGGC 
CTGGGCGCCGGCTGCAGCCTGCTGGTATGGCAGGAAGGCATCGACCTGCGAGTGGTGGAGAGCCTTGGCGGG 
GACTGCCAGGGTTACGGCGGCATGGGCATCGCCGCCGCCGGTAACTGGGTGAAGATATCCAGTCAGGCCAGG 
GACGACTGA