ViewGene
Locus Name:
GeneID:
Location:

GeneID:6972
TrivialName: PA14_72610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72610
PAO1 Ortholog Locus:
Sequence Length:1104
Protein Length:367
Start: 6469536
Stop: 6468433
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN83082.1|AE016769_197 (AE016769) Hypothetical protein [Escherichia coli CFT073]
Identities = 62/223 (27%), Positives = 88/223 (39%), Gaps = 13/223 (5%)
Sequence:
ATGTACGTCAGCGGCGTTCAACTGGCTCATGGCGGCTTCCAGGTCACCGCCGACCAGGGCCAGGGTCAGCTG
GCCGTAGGGCGTGTCCTTGATGCGGTCGATGCGTCCGGAAAGGATGCTGTAGTCGACCCCGGTCTGCCGCGC
CACGGTGCCCAGCAGCGGCGCATAGGTGGCTTCGCCGCGGAAGGTCAGGCGCAGGATGAGACCCGGCACGTG
GGCGAAATCGTCGTGGCGCTCGTCCTCGTCGACCCGTTCGGCCTCGAACACGAAGCGGCGGGTGGTCGGGTG
CTGCGGATGGAGGAAGACATCGGCGACATCGCCCTGCTCGACGATGGCGCCGCCGTCCATGACCGCGACCTG
GTCGCAGACACGACGGATCACGTCCATCTCGTGGGTGATGAGGACGATGGTCAGCTTCAGCTCGCGATTGAT
TTCCGCCAGCAGTTGCAGGACCGAGGCGGTGGTCTGCGGATCGAGGGCGCTGGTGGCCTCGTCGCAGAGCAG
GATGCTCGGCCGGCAGGCCAGGGCGCGAGCGATGCCGACGCGCTGTTTCTGTCCGCCGGACAGCTGGGCCGG
ATACTTGCGCGCGTGGTCGGACAGGCCGACCCGCGCGAGCAGCTCGGAGACCCGCGCATCGACTTCGGCACG
GCTGAAGCCGCCGGCCAGGCGCAGGGGCATGGCGATGTTGTCGGCGACGGTCTTCGAGGACAGCAGGTTGAA
GTGCTGGAAGATCATCCCGACGCGCTGGCGGAAACGGCGCAGGCCTTCGGCGTCGAGGGCGGTGACGTCTTC
GCCCTCGACCAGGATGCGGCCGCCGCTGGGCTCCTCGAGGCGGTTGATCAGGCGCAGCAGGGTGCTCTTGCC
GGCACCGGAATGGCCGATCAGGCCGAAAATCTGCCCGGCCTGGATGTTCAGGCGGGTCGGTTGCAAGGCGGG
GATTTCCCGACCGGCAACTCGATAGGTCTTGTGGACGTCGTGGAATTCGATCACTGGGCGAACCTTGTGGGT
GCGGCGATGCTGTTACGGCTGGAGCACGGGCTTGGCGGGAAGCATGGGCGGTCAGCTAAACCGAGCATTTTA
CCTTGCTTTCTTATGCATTATTAA
Translation:
MYVSGVQLAHGGFQVTADQGQGQLAVGRVLDAVDASGKDAVVDPGLPRHGAQQRRIGGFAAEGQAQDETRHV
GEIVVALVLVDPFGLEHEAAGGRVLRMEEDIGDIALLDDGAAVHDRDLVADTTDHVHLVGDEDDGQLQLAID
FRQQLQDRGGGLRIEGAGGLVAEQDARPAGQGASDADALFLSAGQLGRILARVVGQADPREQLGDPRIDFGT
AEAAGQAQGHGDVVGDGLRGQQVEVLEDHPDALAETAQAFGVEGGDVFALDQDAAAAGLLEAVDQAQQGALA
GTGMADQAENLPGLDVQAGRLQGGDFPTGNSIGLVDVVEFDHWANLVGAAMLLRLEHGLGGKHGRSAKPSIL
PCFLMHY*
AnnotationID:6973GeneID:6972
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:17
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13629




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31023




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49974How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5733225Stop: 5732122

          
Length: 1104


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTACGTCAGCGGCGTTCAACTGGCTCATGGCGGCTTCCAGGTCACCGCCGACCAGGGCCAGGGTCAGCTG 
GCCGTAGGGCGTGTCCTTGATGCGGTCGATGCGTCCGGAAAGGATGCTGTAGTCGACCCCGGTCTGCCGCGC 
CACGGTGCCCAGCAGCGGCGCATAGGTGGCTTCGCCGCGGAAGGTCAGGCGCAGGATGAGACCCGGCACGTG 
GGCGAAATCGTCGTGGCGCTCGTCCTCGTCGACCCGTTCGGCCTCGAACACGAAGCGGCGGGTGGTCGGGTG 
CTGCGGATGGAGGAAGACATCGGCGACATCGCCCTGCTCGACGATGGCGCCGCCGTCCATGACCGCGACCTG 
GTCGCAGACACGACGGATCACGTCCATCTCGTGGGTGATGAGGACGATGGTCAGCTTCAGCTCGCGATTGAT 
TTCCGCCAGCAGTTGCAGGACCGAGGCGGTGGTCTGCGGATCGAGGGCGCTGGTGGCCTCGTCGCAGAGCAG 
GATGCTCGGCCGGCAGGCCAGGGCGCGAGCGATGCCGACGCGCTGTTTCTGTCCGCCGGACAGCTGGGCCGG 
ATACTTGCGCGCGTGGTCGGACAGGCCGACCCGCGCGAGCAGCTCGGAGACCCGCGCATCGACTTCGGCACG 
GCTGAAGCCGCCGGCCAGGCGCAGGGGCATGGCGATGTTGTCGGCGACGGTCTTCGAGGACAGCAGGTTGAA 
GTGCTGGAAGATCATCCCGACGCGCTGGCGGAAACGGCGCAGGCCTTCGGCGTCGAGGGCGGTGACGTCTTC 
GCCCTCGACCAGGATGCGGCCGCCGCTGGGCTCCTCGAGGCGGTTGATCAGGCGCAGCAGGGTGCTCTTGCC 
GGCACCGGAATGGCCGATCAGGCCGAAAATCTGCCCGGCCTGGATGTTCAGGCGGGTCGGTTGCAAGGCGGG 
GATTTCCCGACCGGCAACTCGATAGGTCTTGTGGACGTCGTGGAATTCGATCACTGGGCGAACCTTGTGGGT 
GCGGCGATGCTGTTACGGCTGGAGCACGGGCTTGGCGGGAAGCATGGGCGGTCAGCTAAACCGAGCATTTTA 
CCTTGCTTTCTTATGCATTATTAA