ViewGene
Locus Name:
GeneID:
Location:

GeneID:6971
TrivialName: PA14_72570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72570
PAO1 Ortholog Locus:
Sequence Length:1071
Protein Length:356
Start: 6466723
Stop: 6465653
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAD00241.1| (U74323) glucose-binding protein [Pseudomonas putida]
Identities = 130/224 (58%), Positives = 150/224 (66%)
Sequence:
ATGGTTGCAGTCGGGGCCGTGCTTGTGGACAGGAGTGAAGCGGGTGCCTGGAGGCAAGGCGCCGGGACCGGC
CTTGACCACCTCGCCGTGGAGGTCGTGGGCGTGGTCGTGATGGTGGTGGTAGATCGCCAGGCTGCGAGCGTC
CTGGCCGAACAGCTCGACGAAGGCCGGGTCGCCGCTGACCTGCTCGGGGTGCCCGGAGCAGCAGACATGGCG
GTTCAGGCAGACCACCTGGTCGGTGGCGCTCATCACCAGGTGCAGGTCGTGGGAGACCATCAGCACACCGCA
GCCGTAGCGGTCGCGCAGTTTGCCGATGAGGCGGTAGAGTTCGGCCTGGCCGGCGACGTCGACGCCCTGCAC
CGGCTCGTCGAGCACCAGCAGCTCGGGCTTGCGCAGCAGGGCGCGGGCCAGCAGCACGCGTTGCAGTTCGCC
ACCGGAAATGCTTTGCAGCGGGCGCTCCAGCACGTGCGCCGCGCCGACCTCGCGCAACGCCGCCAGCGCCTG
CTCGCGCTTGACCCCGGGTACCAGGCGGAGGAAGCGCAGTACGCTGAGCGGCAGGGTGGCGTCGACGTGGAG
TTTCTGCGGCATGTAGCCGATGGTCAGCCGCGGCCGTCGCCAGACCTCGCCGACGTGCGGCTTGAGCAGGCC
GAGCACGCTGCGTACCAGGGTGGTCTTGCCGGCGCCGTTGGGGCCGATCAGGGTGACGATCTGGCCGGGCTC
GATGGCCAGGTCGACATCGCTCAGCACCGCCTGGCCGTTGAAGGACACGCCGACCTGGGTCAGCCGCACCAG
CGCGTTGTCCATCAGGCGTCCTTCTGGTCCCGGCAGGTGCCGCAGAGGCCGACCACCTCGACGGTCTGGCTT
TCAACGGCGAAGCCGACGCTGTTCGCTCCGGCGACGATGGCCCGGCTGATATCCGGCTGTTCCAGCTCGATC
GCGGTGTGGCAGGTGCGGCAGATGAGGAACTGGCCCTGGTGGCTGTGCTCCGGGTTGTTGCAGCCGACGAAT
GCGTTGAGCGAGGCGATGCGGTGCACCAGGCCGTTCTCCTGGAGGAAGTCCAGCGCGCGGTAG
Translation:
MVAVGAVLVDRSEAGAWRQGAGTGLDHLAVEVVGVVVMVVVDRQAASVLAEQLDEGRVAADLLGVPGAADMA
VQADHLVGGAHHQVQVVGDHQHTAAVAVAQFADEAVEFGLAGDVDALHRLVEHQQLGLAQQGAGQQHALQFA
TGNALQRALQHVRRADLAQRRQRLLALDPGYQAEEAQYAERQGGVDVEFLRHVADGQPRPSPDLADVRLEQA
EHAAYQGGLAGAVGADQGDDLAGLDGQVDIAQHRLAVEGHADLGQPHQRVVHQASFWSRQVPQRPTTSTVWL
STAKPTLFAPATMARLISGCSSSIAVWQVRQMRNWPWWLCSGLLQPTNALSEAMRCTRPFSWRKSSAR*
AnnotationID:6972GeneID:6971
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:43
Gene Name:
Confidence Code:3
GeneProduct:putative glucose-binding protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAD00241.1| (U74323) glucose-binding protein [Pseudomonas putida]
          Length = 443

 Score =  237 bits (604), Expect = 9e-62






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13627




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31021




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6971
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
203050
                           gb|AAD00241.1|
                           (U74323) glucose-binding protein [Pseudomonas putida]
                           553
                           25.49
                           30.19
                           307
                           594.0
     

     






      

          
GC ORFID: 49973How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5730412Stop: 5729342

          
Length: 1071


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGTTGCAGTCGGGGCCGTGCTTGTGGACAGGAGTGAAGCGGGTGCCTGGAGGCAAGGCGCCGGGACCGGC 
CTTGACCACCTCGCCGTGGAGGTCGTGGGCGTGGTCGTGATGGTGGTGGTAGATCGCCAGGCTGCGAGCGTC 
CTGGCCGAACAGCTCGACGAAGGCCGGGTCGCCGCTGACCTGCTCGGGGTGCCCGGAGCAGCAGACATGGCG 
GTTCAGGCAGACCACCTGGTCGGTGGCGCTCATCACCAGGTGCAGGTCGTGGGAGACCATCAGCACACCGCA 
GCCGTAGCGGTCGCGCAGTTTGCCGATGAGGCGGTAGAGTTCGGCCTGGCCGGCGACGTCGACGCCCTGCAC 
CGGCTCGTCGAGCACCAGCAGCTCGGGCTTGCGCAGCAGGGCGCGGGCCAGCAGCACGCGTTGCAGTTCGCC 
ACCGGAAATGCTTTGCAGCGGGCGCTCCAGCACGTGCGCCGCGCCGACCTCGCGCAACGCCGCCAGCGCCTG 
CTCGCGCTTGACCCCGGGTACCAGGCGGAGGAAGCGCAGTACGCTGAGCGGCAGGGTGGCGTCGACGTGGAG 
TTTCTGCGGCATGTAGCCGATGGTCAGCCGCGGCCGTCGCCAGACCTCGCCGACGTGCGGCTTGAGCAGGCC 
GAGCACGCTGCGTACCAGGGTGGTCTTGCCGGCGCCGTTGGGGCCGATCAGGGTGACGATCTGGCCGGGCTC 
GATGGCCAGGTCGACATCGCTCAGCACCGCCTGGCCGTTGAAGGACACGCCGACCTGGGTCAGCCGCACCAG 
CGCGTTGTCCATCAGGCGTCCTTCTGGTCCCGGCAGGTGCCGCAGAGGCCGACCACCTCGACGGTCTGGCTT 
TCAACGGCGAAGCCGACGCTGTTCGCTCCGGCGACGATGGCCCGGCTGATATCCGGCTGTTCCAGCTCGATC 
GCGGTGTGGCAGGTGCGGCAGATGAGGAACTGGCCCTGGTGGCTGTGCTCCGGGTTGTTGCAGCCGACGAAT 
GCGTTGAGCGAGGCGATGCGGTGCACCAGGCCGTTCTCCTGGAGGAAGTCCAGCGCGCGGTAG