ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6951

TrivialName: PA14_71660

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_71660

PAO1 Ortholog Locus:

Sequence Length: 1284

Protein Length: 427

Start: 6383926

Stop: 6385209

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAC46447.1| (AL591788) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Identities = 70/270 (25%), Positives = 110/270 (40%), Gaps = 38/270 (14%)

Sequence:

GTGGATAACGTCCGCGTCATACGTCCTACGAAGGCATATCCCCTCTCAACACCCCGTCAACCCTTGCTCCCG
CCGCTCCTCCGGGAAGAAATAAGGCCTCAATACCCGTACCCCGACGCTGTTGCCGGCAAACGCCGCCACCAA
CCACAACCAGCCATGCAGGCTGCCGGAAGCGATCCCGCTGAAATACGCGCCGATGTTGCAGCCATAGGCCAG
GCGCGCGCCGTAGCCGAGCAGCAGCCCGCCGATCACCGCCGCCGCCAGCGAACGGCGCGGGATGTCCAGGTT
CGGCGCGAAGCGTCCGGCCAGGCCGGCGGCGAGCAGCGCGCCGAGGACGATGCCGATGTCCATCACGCTGGT
GATGTCTTCCCACAGCGGCGCGGCCAGCGCCTTGGCGTTCGCCGGCGTCTGCCAGAAGGCCCAGGCGCCGAC
GTCCAGGCCCACGCCCTGGGCGATCTTCGCGCCCCACAGGGCGAAGGCCGACGTGATGCCCCAGGGGCGTCC
GGCGAGGTACAGGGTGAGGAAGTTGAGCAGCGCCAGCGCCAGCGCGCCCCAGACCAGCGGCCAGGGGCCGCG
GAGGAAGCGCCGCCAGCCGCGCCATTCGGCGCTCGGCGGGGTTTCCAGGGTGCCGTGGCGGGCCTTCTCCAT
GCGTACCGTGACCCCGGCGATGCCGATGAACACCGCCAGGCTCAACACCAGCGCCGGTGCCAGGCCCAGTTC
GGCGACCAGCGAGATCGGCGGCAGCGACGGCAGGGCGAACCACCAGCCGACATGCTGGGTGGCGATCAGCGA
GCCGAGGATGAAGAACAGCAGGGTCACCAGCATCCGCGCGTTGCCGCCGCCGACGGTGAACAGGGTGCCGGA
GGCGCAGCCGCCGCCCAGTTGCATGCCGATGCCGAAAATGAAGGCGCCGACGATCACCGAAGTGCCGACCGG
CGAGACGAAACCGCTCACCGGCTGGCCGAACAGGCTGCCCGCCGCCAGCGCCGGGAAGAACAGCAGCACCGC
CAGCGCCAGCATCACCATCTGCGCGCGCAGCCCGGCGCCACGCCGTTCGCGGATGAATACCCGCCAGGCGGA
GGTGAAGCCGAAGGCGGCGTGGTAGAGGGTCAGGCCCAGGGCGCCGCCGACGATGAAGAGGATGGCCTGGCG
CGCGCTGACCGCGTTGAACAGGAACAGCCCGCCGAGCACCAGCAGGGCGAAGGCGATCAGGGGGGCGGCGAG
CTTGCGCTCGGGCGCGGCGGAAAGGGCGACACTCATGGCTACTCCTGGGCGCGAGGGTGA

Translation:

MDNVRVIRPTKAYPLSTPRQPLLPPLLREEIRPQYPYPDAVAGKRRHQPQPAMQAAGSDPAEIRADVAAIGQ
ARAVAEQQPADHRRRQRTARDVQVRREASGQAGGEQRAEDDADVHHAGDVFPQRRGQRLGVRRRLPEGPGAD
VQAHALGDLRAPQGEGRRDAPGASGEVQGEEVEQRQRQRAPDQRPGAAEEAPPAAPFGARRGFQGAVAGLLH
AYRDPGDADEHRQAQHQRRCQAQFGDQRDRRQRRQGEPPADMLGGDQRAEDEEQQGHQHPRVAAADGEQGAG
GAAAAQLHADAENEGADDHRSADRRDETAHRLAEQAARRQRREEQQHRQRQHHHLRAQPGATPFADEYPPGG
GEAEGGVVEGQAQGAADDEEDGLARADRVEQEQPAEHQQGEGDQGGGELALGRGGKGDTHGYSWARG*

AnnotationID:6952 GeneID:6951

AnnotatorUID: diggins

Modification Date/Time: 2004-10-06 15:03:09

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16694

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30981

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34655

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6951_cdd.html

URL:

GC ORFID: `49953`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5647615`	Stop: `5648898`
Length: `1284`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGATAACGTCCGCGTCATACGTCCTACGAAGGCATATCCCCTCTCAACACCCCGTCAACCCTTGCTCCCG CCGCTCCTCCGGGAAGAAATAAGGCCTCAATACCCGTACCCCGACGCTGTTGCCGGCAAACGCCGCCACCAA CCACAACCAGCCATGCAGGCTGCCGGAAGCGATCCCGCTGAAATACGCGCCGATGTTGCAGCCATAGGCCAG GCGCGCGCCGTAGCCGAGCAGCAGCCCGCCGATCACCGCCGCCGCCAGCGAACGGCGCGGGATGTCCAGGTT CGGCGCGAAGCGTCCGGCCAGGCCGGCGGCGAGCAGCGCGCCGAGGACGATGCCGATGTCCATCACGCTGGT GATGTCTTCCCACAGCGGCGCGGCCAGCGCCTTGGCGTTCGCCGGCGTCTGCCAGAAGGCCCAGGCGCCGAC GTCCAGGCCCACGCCCTGGGCGATCTTCGCGCCCCACAGGGCGAAGGCCGACGTGATGCCCCAGGGGCGTCC GGCGAGGTACAGGGTGAGGAAGTTGAGCAGCGCCAGCGCCAGCGCGCCCCAGACCAGCGGCCAGGGGCCGCG GAGGAAGCGCCGCCAGCCGCGCCATTCGGCGCTCGGCGGGGTTTCCAGGGTGCCGTGGCGGGCCTTCTCCAT GCGTACCGTGACCCCGGCGATGCCGATGAACACCGCCAGGCTCAACACCAGCGCCGGTGCCAGGCCCAGTTC GGCGACCAGCGAGATCGGCGGCAGCGACGGCAGGGCGAACCACCAGCCGACATGCTGGGTGGCGATCAGCGA GCCGAGGATGAAGAACAGCAGGGTCACCAGCATCCGCGCGTTGCCGCCGCCGACGGTGAACAGGGTGCCGGA GGCGCAGCCGCCGCCCAGTTGCATGCCGATGCCGAAAATGAAGGCGCCGACGATCACCGAAGTGCCGACCGG CGAGACGAAACCGCTCACCGGCTGGCCGAACAGGCTGCCCGCCGCCAGCGCCGGGAAGAACAGCAGCACCGC CAGCGCCAGCATCACCATCTGCGCGCGCAGCCCGGCGCCACGCCGTTCGCGGATGAATACCCGCCAGGCGGA GGTGAAGCCGAAGGCGGCGTGGTAGAGGGTCAGGCCCAGGGCGCCGCCGACGATGAAGAGGATGGCCTGGCG CGCGCTGACCGCGTTGAACAGGAACAGCCCGCCGAGCACCAGCAGGGCGAAGGCGATCAGGGGGGCGGCGAG CTTGCGCTCGGGCGCGGCGGAAAGGGCGACACTCATGGCTACTCCTGGGCGCGAGGGTGA