ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6949

TrivialName: PA14_71550

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_71550

PAO1 Ortholog Locus:

Sequence Length: 1320

Protein Length: 439

Start: 6374762

Stop: 6376081

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAA55649.1| (X79027) unknown [Microbacterium ammoniaphilum] Identities = 129/390 (33%), Positives = 148/390 (37%), Gaps = 69/390 (17%)

Sequence:

GTGGACGCCGCGCATTTGTACCCACAACGACAAAGAGGAAACGCGTATGTCTGGCAATCGTGGTGTGGTCTA
TCTCGGCCCGGGCAAGGTCGAGGTGCAGAACATTCCCTATCCGAAGATGCAGGACCCGCAGGGCCGGCAGAT
CGACCACGGGGTGATCCTGCGGGTGGTCTCCACCAACATCTGCGGCTCCGACCAGCACATGGTGCGCGGCCG
CACCACCGCGCCGGAAGGCCTGGTGCTGGGCCACGAGATCACCGGCGAGGTAGTGGAGATCGGGCGTGGCGT
GGAAACCATGAAGATCGGCGACCTGGTCTCGGTACCGTTCAACGTCGCTTGCGGCCATTGCCGTACCTGCAA
GGAACAGCACACCGGCGTCTGCCTGACGGTCAATCCGGCGCGGGCCGGCGGCGCCTACGGCTACGTCGACAT
GGGTGGCTGGGTCGGCGGCCAGGCCGAATACGTGCTGGTGCCCTACGCCGACTTCAACCTGCTGAAACTGCC
CAACCGCGAAGCGGCGATGGAGAAGATCCGCGACCTGACCTGCCTTTCGGACATCCTCCCCACCGGCTACCA
CGGCGCGGTCACCGCCGGCGTCGGCCCGGGCAGCACGGTCTACATCGCCGGCGCCGGTCCGGTCGGCCTGGC
CGCGGCGGCCTCGGCACGCCTGCTCGGCGCGGCGGTGGTGATCGTCGGCGACGTCAACCCGACCCGCCTGGC
CCATGCCAAGAAACAGGGCTTCGAGATCGCCGACCTGTCCAAGGACACCCCGCTGCACGAACAGATCGCCGC
TCTGTTGGGCGAGCCGGAGGTCGACTGCGCGGTCGACGCGGTCGGTTTCGAGGCGCGCGGCCACGGCCATTC
GGGCTCGCAGCAGGAAGCCCCGGCCACCGTGCTCAACTCGCTGATGGGCATCACCCGGGTCGCCGGCAAGAT
CGGCATCCCCGGCCTGTACGTCACCGAAGACCCGGGCGCGGTGGACGCGGCCGCCAAGCACGGCGCCCTGAG
CATCCGCTTCGGCCTGGGCTGGGCCAAGTCGCACAGCTTCCATACCGGCCAGACCCCGGTGATGAAGTACAA
CCGCCAGCTGATGCAGGCGATCATGTGGGACCGGATCAAGATCGCCGACATCGTCGGGGTGGAAGTCATCAC
CCTCGACGATGCGCCGAAAGGCTACGGCGAGTTCGACGCCGGGGTGCCGAAGAAATTCGTCATCGACCCGCA
CAACCTGTTCCGCGCGGCCTGAACCACCGGCAACAACCGACGCGGCCTACGGGCCGCGTCTTCGTTGGCGCT
ATCCGGGGGAACTGCCGGCGATAA

Translation:

MDAAHLYPQRQRGNAYVWQSWCGLSRPGQGRGAEHSLSEDAGPAGPADRPRGDPAGGLHQHLRLRPAHGARP
HHRAGRPGAGPRDHRRGSGDRAWRGNHEDRRPGLGTVQRRLRPLPYLQGTAHRRLPDGQSGAGRRRLRLRRH
GWLGRRPGRIRAGALRRLQPAETAQPRSGDGEDPRPDLPFGHPPHRLPRRGHRRRRPGQHGLHRRRRSGRPG
RGGLGTPARRGGGDRRRRQPDPPGPCQETGLRDRRPVQGHPAARTDRRSVGRAGGRLRGRRGRFRGARPRPF
GLAAGSPGHRAQLADGHHPGRRQDRHPRPVRHRRPGRGGRGRQARRPEHPLRPGLGQVAQLPYRPDPGDEVQ
PPADAGDHVGPDQDRRHRRGGSHHPRRCAERLRRVRRRGAEEIRHRPAQPVPRGLNHRQQPTRPTGRVFVGA
IRGNCRR*

AnnotationID:6950 GeneID:6949

AnnotatorUID: diggins

Modification Date/Time: 2004-10-06 13:01:07

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16691

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30977

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34649

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6949_cdd.html

URL:

GC ORFID: `49951`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5638451`	Stop: `5639770`
Length: `1320`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGACGCCGCGCATTTGTACCCACAACGACAAAGAGGAAACGCGTATGTCTGGCAATCGTGGTGTGGTCTA TCTCGGCCCGGGCAAGGTCGAGGTGCAGAACATTCCCTATCCGAAGATGCAGGACCCGCAGGGCCGGCAGAT CGACCACGGGGTGATCCTGCGGGTGGTCTCCACCAACATCTGCGGCTCCGACCAGCACATGGTGCGCGGCCG CACCACCGCGCCGGAAGGCCTGGTGCTGGGCCACGAGATCACCGGCGAGGTAGTGGAGATCGGGCGTGGCGT GGAAACCATGAAGATCGGCGACCTGGTCTCGGTACCGTTCAACGTCGCTTGCGGCCATTGCCGTACCTGCAA GGAACAGCACACCGGCGTCTGCCTGACGGTCAATCCGGCGCGGGCCGGCGGCGCCTACGGCTACGTCGACAT GGGTGGCTGGGTCGGCGGCCAGGCCGAATACGTGCTGGTGCCCTACGCCGACTTCAACCTGCTGAAACTGCC CAACCGCGAAGCGGCGATGGAGAAGATCCGCGACCTGACCTGCCTTTCGGACATCCTCCCCACCGGCTACCA CGGCGCGGTCACCGCCGGCGTCGGCCCGGGCAGCACGGTCTACATCGCCGGCGCCGGTCCGGTCGGCCTGGC CGCGGCGGCCTCGGCACGCCTGCTCGGCGCGGCGGTGGTGATCGTCGGCGACGTCAACCCGACCCGCCTGGC CCATGCCAAGAAACAGGGCTTCGAGATCGCCGACCTGTCCAAGGACACCCCGCTGCACGAACAGATCGCCGC TCTGTTGGGCGAGCCGGAGGTCGACTGCGCGGTCGACGCGGTCGGTTTCGAGGCGCGCGGCCACGGCCATTC GGGCTCGCAGCAGGAAGCCCCGGCCACCGTGCTCAACTCGCTGATGGGCATCACCCGGGTCGCCGGCAAGAT CGGCATCCCCGGCCTGTACGTCACCGAAGACCCGGGCGCGGTGGACGCGGCCGCCAAGCACGGCGCCCTGAG CATCCGCTTCGGCCTGGGCTGGGCCAAGTCGCACAGCTTCCATACCGGCCAGACCCCGGTGATGAAGTACAA CCGCCAGCTGATGCAGGCGATCATGTGGGACCGGATCAAGATCGCCGACATCGTCGGGGTGGAAGTCATCAC CCTCGACGATGCGCCGAAAGGCTACGGCGAGTTCGACGCCGGGGTGCCGAAGAAATTCGTCATCGACCCGCA CAACCTGTTCCGCGCGGCCTGAACCACCGGCAACAACCGACGCGGCCTACGGGCCGCGTCTTCGTTGGCGCT ATCCGGGGGAACTGCCGGCGATAA