ViewGene

Locus Name:
GeneID:
Location:

GeneID:6945
TrivialName: PA14_71430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71430
PAO1 Ortholog Locus:PA5412
Sequence Length:2442
Protein Length:813
Start: 6363562
Stop: 6361121
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08797.1|AE004953_11 (AE004953) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 807/813 (99%), Positives = 809/813 (99%)
Sequence:
ATGGATGATCGGATGTCAGACAAGCCGCTCGGCCGCTTGTTGCTCGAAGGCCTCGGCGAGATCGCCTGGATC
GCCGTGCTGGTGGCCCTTGGCGTCCTCCTGCCGTTGCCGCTGGTAGCGCTGGGTTGGGCGCTGCTGCTGGGC
GCCGAGTGGGCCATGGATCGTTGGCGCGGCAAGGTGCCGTATCGCCTGCAACAGGCGCTGTTCTTCTGGGTT
CTGGGTGGCGGCATCGCCCTGGGCCAGGCACTGCCGGGCTTCTGGCTGGGACTGGGCGGTGGCTTGCTGGCG
GTGATCGGCGGCGTGCTGCTGCAGATCCGTTTCGAGCGTGGCCTGCGCCTGGAGCGCCAGGCTCCGCAGGCG
CTGGACGTACCGCTGCCGGCGGGAGGTAGCGCCTGGGGCGGCGAAGCGCCCGAGCGAACCCCCGAGGGCGAG
GCGATCCGCCTGTTCGACGGCGGCGAGATCGCCATGGGCGGCCCGCTGGTATGCCACTACCTGATGCCCGAC
GGTTGCTTCATCCCCGACTGCAATCCTTCGGCACGCTTTTCCAGCGATGGCCGCCACTTCGTTTCGCCGATA
CCGAGCCGAGGCGCGTGGGGCCTGGCGATCTTCGACCGGCAGGAGCGGTTGCTTTACCGCTGTGCCGTGGAC
AACTTCTGGGAGCTGGACAGCGTCACCGAGCGCGAGGTGATCGGCCGGCACAGCCCGCTGACGTCCAACGCA
CCGCAGCGCCTCGAGCTGCAGGCGCTCAAGGCCGGCAGCGAGGCCGAGGCCTTCGTTGCCATCGGTGACCTC
TGGCTGCCCGAAAGCGAATGGCAGCGCTGGAGCGGGGATCTGCGCGCGCAACCGCTACCGTCCCCGCTTGGC
GGGCCCGCGCTGGAAATCCGCCCCTGGCTGCCGGCCAGCCTGCTGGCCCTGGACGATCCTTTCGCGCCGCTG
CGCGCCAACCGCGGCGAGCTGTGGATAAACGGCGAGGCCAGCGGCCTCTACCTGTCGCGGGAAGCGCCGCCA
TTGGCTTGGAACGATGACGGCCGGGCGCTGGCGCTGCAGGCAGCAGGCGAGCCCCTGGGGCAGGATACCTAC
TGGCTTTGGCGAGAGGACGGCGGCCTGCGTGCGCTGGGCGCGCCGTGGTCGGCGTTGCCCGCCGAGCCCCAT
GCCGGTGGACCCGAACTGCTCGGGCTGGAGGATGGCTGGCTGCGTTTCGGCCTGGACCTGGCGCAACCCTGC
CTGACCTACGAACGCTACGGCACGCTGGGTTCGTACAGCCATTCCAGCCTCTACCTTCTGCACGCTCGCGAT
GCGGACGACCGGCCGCGCTGGCGCGAGGCCGACATGCCGCGCCTGGACCTGTTGCTGCCCCTGGATGGCGCG
GCCGGCAGGCCGGGATGCCTGTTGCAGAGCGCACCGCTGGCCGATGGCAGCCGGGCCGTCTGGGAGTGGTTG
CGCGACGATCAGGAGGCGGAGCGCGGCGCCTATGCCTTGCGCCTGGGCGACTGGCGCCTGGATGGCGAGTGG
ACGCTCGACCACCGCGTGTCCGATTGCGGTCGCTACCTGGCCCTGGTGGCCTTCGCCGAGGCGCCGACCCTG
CCGCAGCGCCTGGCCATACTCGATAGCCGGGAGCGGCGTCTGGAGTGGCTCGCCGAGCCGCTGGCCGATCTA
CACCTGCAAGGTTTCATCGATGGCCATGTGCATCTGCTCCACCTGCTCGGCCGCAACGCCTACCAGCCGCCG
GGCGGGCCGGGCGAAGGCGACCCCGGCCTGTTGCGCCGCTTCGACGAAGGCTTGCCCGAGCCCGGCGCCTGG
CACGCATTCGGCCGCTTCCACGACGACTGGCGGCATTACTACGAGCAGGCGCGGGTGGCGTTCGATGGCACG
GCCTGGCGGCTGTGCCCCGCGTCGCGCTGGCTGGACGCACCGCCGCGGCCCTGGAGCGACGGCAACTTCGTC
TTGCCGTCGGTGGGCGCGAAGGACGCCGCCTGGGGCTTCGGTTTCCACTACGAGGGCATGCACCGCGACGAG
GACGTGCGCGCCGGGTTCAGCCGCGATGGCTACCTGCTGACCGCGTCGGGCATCGGCTTGGGCAACCTGGCG
GCGCCAATGATCTGGTCGGCGGACGGTCGCTACCTGGCGCTGACCCGGCACGTCCAGCGCTACGAGGAAAGC
GAGCTGGAGCGGGACCAGTGGCGCCTGCTGCTGCTCGACGTGCAAGAGCGGACGTTGCGTCGCTACCGCGAC
GACCTCGGCGAGTACCCGTGCTTCGACAGCTTCGACGACGACCTGTGCTTCCGCTGCGCGGGGACGGGGCGC
TACGTGCTGGCCCTGGACTCGCTGCTGAAGGCTCCCGCCGAGTCGCTACAGGCCTGCGCCGGACGCTGGCTG
CCGGCCGAGGAACTGCCGCGGCGGCGCTACTGGGAGCGCCTGGCGTTTCCCTCGCGCCCTCAGTAG
Translation:
MDDRMSDKPLGRLLLEGLGEIAWIAVLVALGVLLPLPLVALGWALLLGAEWAMDRWRGKVPYRLQQALFFWV
LGGGIALGQALPGFWLGLGGGLLAVIGGVLLQIRFERGLRLERQAPQALDVPLPAGGSAWGGEAPERTPEGE
AIRLFDGGEIAMGGPLVCHYLMPDGCFIPDCNPSARFSSDGRHFVSPIPSRGAWGLAIFDRQERLLYRCAVD
NFWELDSVTEREVIGRHSPLTSNAPQRLELQALKAGSEAEAFVAIGDLWLPESEWQRWSGDLRAQPLPSPLG
GPALEIRPWLPASLLALDDPFAPLRANRGELWINGEASGLYLSREAPPLAWNDDGRALALQAAGEPLGQDTY
WLWREDGGLRALGAPWSALPAEPHAGGPELLGLEDGWLRFGLDLAQPCLTYERYGTLGSYSHSSLYLLHARD
ADDRPRWREADMPRLDLLLPLDGAAGRPGCLLQSAPLADGSRAVWEWLRDDQEAERGAYALRLGDWRLDGEW
TLDHRVSDCGRYLALVAFAEAPTLPQRLAILDSRERRLEWLAEPLADLHLQGFIDGHVHLLHLLGRNAYQPP
GGPGEGDPGLLRRFDEGLPEPGAWHAFGRFHDDWRHYYEQARVAFDGTAWRLCPASRWLDAPPRPWSDGNFV
LPSVGAKDAAWGFGFHYEGMHRDEDVRAGFSRDGYLLTASGIGLGNLAAPMIWSADGRYLALTRHVQRYEES
ELERDQWRLLLLDVQERTLRRYRDDLGEYPCFDSFDDDLCFRCAGTGRYVLALDSLLKAPAESLQACAGRWL
PAEELPRRRYWERLAFPSRPQ*
AnnotationID:6946GeneID:6945
AnnotatorUID: danlee
Modification Date/Time: 2006-02-08 16:04:41
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA5412
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|9951738|gb|AAG08797.1|  hypothetical protein PA5412 [Pseudomonas aeruginosa PAO1]
 gi|15600605|ref|NP_254099.1|  hypothetical protein PA5412 [Pseudomonas aeruginosa PAO1]
Length=837

 Score = 1696 bits (4392),  Expect = 0.0
 Identities = 807/813 (99%), Positives = 809/813 (99%), Gaps = 0/813 (0%)

gi|84324993|ref|ZP_00973044.1|  hypothetical protein Paer2_01003798 [Pseudomonas aeruginosa 2192]
Length=809

 Score = 1678 bits (4345),  Expect = 0.0
 Identities = 798/809 (98%), Positives = 802/809 (99%), Gaps = 0/809 (0%)

gi|84318174|ref|ZP_00966603.1|  hypothetical protein PaerC_01004166 [Pseudomonas aeruginosa C3719]
Length=1068

 Score = 1605 bits (4157),  Expect = 0.0
 Identities = 765/786 (97%), Positives = 770/786 (97%), Gaps = 0/786 (0%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
Confirmed frame-shift results in truncation of first 24 aa of PA5412.
ReferenceID:13580
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30969
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6945

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
8054 PA5412_tr translation of PA5412 837 96.41 96.65 24 4392.0
203047 gb|AAG08797.1|AE004953_11 (AE004953) hypothetical protein PA5412 [Pseudomonas aeruginosa PAO1] 837 96.41 96.65 24 4392.0
GC ORFID: 49947How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5627251Stop: 5624810
Length: 2442
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5412 translation of PA5412Homolog Bit Score 1696.0
Other Homologs: t_PA5412 translation of PA5412 (BLASTP 1696)
GC ORF Sequence
ATGGATGATCGGATGTCAGACAAGCCGCTCGGCCGCTTGTTGCTCGAAGGCCTCGGCGAGATCGCCTGGATC
GCCGTGCTGGTGGCCCTTGGCGTCCTCCTGCCGTTGCCGCTGGTAGCGCTGGGTTGGGCGCTGCTGCTGGGC
GCCGAGTGGGCCATGGATCGTTGGCGCGGCAAGGTGCCGTATCGCCTGCAACAGGCGCTGTTCTTCTGGGTT
CTGGGTGGCGGCATCGCCCTGGGCCAGGCACTGCCGGGCTTCTGGCTGGGACTGGGCGGTGGCTTGCTGGCG
GTGATCGGCGGCGTGCTGCTGCAGATCCGTTTCGAGCGTGGCCTGCGCCTGGAGCGCCAGGCTCCGCAGGCG
CTGGACGTACCGCTGCCGGCGGGAGGTAGCGCCTGGGGCGGCGAAGCGCCCGAGCGAACCCCCGAGGGCGAG
GCGATCCGCCTGTTCGACGGCGGCGAGATCGCCATGGGCGGCCCGCTGGTATGCCACTACCTGATGCCCGAC
GGTTGCTTCATCCCCGACTGCAATCCTTCGGCACGCTTTTCCAGCGATGGCCGCCACTTCGTTTCGCCGATA
CCGAGCCGAGGCGCGTGGGGCCTGGCGATCTTCGACCGGCAGGAGCGGTTGCTTTACCGCTGTGCCGTGGAC
AACTTCTGGGAGCTGGACAGCGTCACCGAGCGCGAGGTGATCGGCCGGCACAGCCCGCTGACGTCCAACGCA
CCGCAGCGCCTCGAGCTGCAGGCGCTCAAGGCCGGCAGCGAGGCCGAGGCCTTCGTTGCCATCGGTGACCTC
TGGCTGCCCGAAAGCGAATGGCAGCGCTGGAGCGGGGATCTGCGCGCGCAACCGCTACCGTCCCCGCTTGGC
GGGCCCGCGCTGGAAATCCGCCCCTGGCTGCCGGCCAGCCTGCTGGCCCTGGACGATCCTTTCGCGCCGCTG
CGCGCCAACCGCGGCGAGCTGTGGATAAACGGCGAGGCCAGCGGCCTCTACCTGTCGCGGGAAGCGCCGCCA
TTGGCTTGGAACGATGACGGCCGGGCGCTGGCGCTGCAGGCAGCAGGCGAGCCCCTGGGGCAGGATACCTAC
TGGCTTTGGCGAGAGGACGGCGGCCTGCGTGCGCTGGGCGCGCCGTGGTCGGCGTTGCCCGCCGAGCCCCAT
GCCGGTGGACCCGAACTGCTCGGGCTGGAGGATGGCTGGCTGCGTTTCGGCCTGGACCTGGCGCAACCCTGC
CTGACCTACGAACGCTACGGCACGCTGGGTTCGTACAGCCATTCCAGCCTCTACCTTCTGCACGCTCGCGAT
GCGGACGACCGGCCGCGCTGGCGCGAGGCCGACATGCCGCGCCTGGACCTGTTGCTGCCCCTGGATGGCGCG
GCCGGCAGGCCGGGATGCCTGTTGCAGAGCGCACCGCTGGCCGATGGCAGCCGGGCCGTCTGGGAGTGGTTG
CGCGACGATCAGGAGGCGGAGCGCGGCGCCTATGCCTTGCGCCTGGGCGACTGGCGCCTGGATGGCGAGTGG
ACGCTCGACCACCGCGTGTCCGATTGCGGTCGCTACCTGGCCCTGGTGGCCTTCGCCGAGGCGCCGACCCTG
CCGCAGCGCCTGGCCATACTCGATAGCCGGGAGCGGCGTCTGGAGTGGCTCGCCGAGCCGCTGGCCGATCTA
CACCTGCAAGGTTTCATCGATGGCCATGTGCATCTGCTCCACCTGCTCGGCCGCAACGCCTACCAGCCGCCG
GGCGGGCCGGGCGAAGGCGACCCCGGCCTGTTGCGCCGCTTCGACGAAGGCTTGCCCGAGCCCGGCGCCTGG
CACGCATTCGGCCGCTTCCACGACGACTGGCGGCATTACTACGAGCAGGCGCGGGTGGCGTTCGATGGCACG
GCCTGGCGGCTGTGCCCCGCGTCGCGCTGGCTGGACGCACCGCCGCGGCCCTGGAGCGACGGCAACTTCGTC
TTGCCGTCGGTGGGCGCGAAGGACGCCGCCTGGGGCTTCGGTTTCCACTACGAGGGCATGCACCGCGACGAG
GACGTGCGCGCCGGGTTCAGCCGCGATGGCTACCTGCTGACCGCGTCGGGCATCGGCTTGGGCAACCTGGCG
GCGCCAATGATCTGGTCGGCGGACGGTCGCTACCTGGCGCTGACCCGGCACGTCCAGCGCTACGAGGAAAGC
GAGCTGGAGCGGGACCAGTGGCGCCTGCTGCTGCTCGACGTGCAAGAGCGGACGTTGCGTCGCTACCGCGAC
GACCTCGGCGAGTACCCGTGCTTCGACAGCTTCGACGACGACCTGTGCTTCCGCTGCGCGGGGACGGGGCGC
TACGTGCTGGCCCTGGACTCGCTGCTGAAGGCTCCCGCCGAGTCGCTACAGGCCTGCGCCGGACGCTGGCTG
CCGGCCGAGGAACTGCCGCGGCGGCGCTACTGGGAGCGCCTGGCGTTTCCCTCGCGCCCTCAGTAG