ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6945

TrivialName: PA14_71430

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_71430

PAO1 Ortholog Locus: PA5412

Sequence Length: 2442

Protein Length: 813

Start: 6363562

Stop: 6361121

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08797.1|AE004953_11 (AE004953) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 807/813 (99%), Positives = 809/813 (99%)

Sequence:

ATGGATGATCGGATGTCAGACAAGCCGCTCGGCCGCTTGTTGCTCGAAGGCCTCGGCGAGATCGCCTGGATC
GCCGTGCTGGTGGCCCTTGGCGTCCTCCTGCCGTTGCCGCTGGTAGCGCTGGGTTGGGCGCTGCTGCTGGGC
GCCGAGTGGGCCATGGATCGTTGGCGCGGCAAGGTGCCGTATCGCCTGCAACAGGCGCTGTTCTTCTGGGTT
CTGGGTGGCGGCATCGCCCTGGGCCAGGCACTGCCGGGCTTCTGGCTGGGACTGGGCGGTGGCTTGCTGGCG
GTGATCGGCGGCGTGCTGCTGCAGATCCGTTTCGAGCGTGGCCTGCGCCTGGAGCGCCAGGCTCCGCAGGCG
CTGGACGTACCGCTGCCGGCGGGAGGTAGCGCCTGGGGCGGCGAAGCGCCCGAGCGAACCCCCGAGGGCGAG
GCGATCCGCCTGTTCGACGGCGGCGAGATCGCCATGGGCGGCCCGCTGGTATGCCACTACCTGATGCCCGAC
GGTTGCTTCATCCCCGACTGCAATCCTTCGGCACGCTTTTCCAGCGATGGCCGCCACTTCGTTTCGCCGATA
CCGAGCCGAGGCGCGTGGGGCCTGGCGATCTTCGACCGGCAGGAGCGGTTGCTTTACCGCTGTGCCGTGGAC
AACTTCTGGGAGCTGGACAGCGTCACCGAGCGCGAGGTGATCGGCCGGCACAGCCCGCTGACGTCCAACGCA
CCGCAGCGCCTCGAGCTGCAGGCGCTCAAGGCCGGCAGCGAGGCCGAGGCCTTCGTTGCCATCGGTGACCTC
TGGCTGCCCGAAAGCGAATGGCAGCGCTGGAGCGGGGATCTGCGCGCGCAACCGCTACCGTCCCCGCTTGGC
GGGCCCGCGCTGGAAATCCGCCCCTGGCTGCCGGCCAGCCTGCTGGCCCTGGACGATCCTTTCGCGCCGCTG
CGCGCCAACCGCGGCGAGCTGTGGATAAACGGCGAGGCCAGCGGCCTCTACCTGTCGCGGGAAGCGCCGCCA
TTGGCTTGGAACGATGACGGCCGGGCGCTGGCGCTGCAGGCAGCAGGCGAGCCCCTGGGGCAGGATACCTAC
TGGCTTTGGCGAGAGGACGGCGGCCTGCGTGCGCTGGGCGCGCCGTGGTCGGCGTTGCCCGCCGAGCCCCAT
GCCGGTGGACCCGAACTGCTCGGGCTGGAGGATGGCTGGCTGCGTTTCGGCCTGGACCTGGCGCAACCCTGC
CTGACCTACGAACGCTACGGCACGCTGGGTTCGTACAGCCATTCCAGCCTCTACCTTCTGCACGCTCGCGAT
GCGGACGACCGGCCGCGCTGGCGCGAGGCCGACATGCCGCGCCTGGACCTGTTGCTGCCCCTGGATGGCGCG
GCCGGCAGGCCGGGATGCCTGTTGCAGAGCGCACCGCTGGCCGATGGCAGCCGGGCCGTCTGGGAGTGGTTG
CGCGACGATCAGGAGGCGGAGCGCGGCGCCTATGCCTTGCGCCTGGGCGACTGGCGCCTGGATGGCGAGTGG
ACGCTCGACCACCGCGTGTCCGATTGCGGTCGCTACCTGGCCCTGGTGGCCTTCGCCGAGGCGCCGACCCTG
CCGCAGCGCCTGGCCATACTCGATAGCCGGGAGCGGCGTCTGGAGTGGCTCGCCGAGCCGCTGGCCGATCTA
CACCTGCAAGGTTTCATCGATGGCCATGTGCATCTGCTCCACCTGCTCGGCCGCAACGCCTACCAGCCGCCG
GGCGGGCCGGGCGAAGGCGACCCCGGCCTGTTGCGCCGCTTCGACGAAGGCTTGCCCGAGCCCGGCGCCTGG
CACGCATTCGGCCGCTTCCACGACGACTGGCGGCATTACTACGAGCAGGCGCGGGTGGCGTTCGATGGCACG
GCCTGGCGGCTGTGCCCCGCGTCGCGCTGGCTGGACGCACCGCCGCGGCCCTGGAGCGACGGCAACTTCGTC
TTGCCGTCGGTGGGCGCGAAGGACGCCGCCTGGGGCTTCGGTTTCCACTACGAGGGCATGCACCGCGACGAG
GACGTGCGCGCCGGGTTCAGCCGCGATGGCTACCTGCTGACCGCGTCGGGCATCGGCTTGGGCAACCTGGCG
GCGCCAATGATCTGGTCGGCGGACGGTCGCTACCTGGCGCTGACCCGGCACGTCCAGCGCTACGAGGAAAGC
GAGCTGGAGCGGGACCAGTGGCGCCTGCTGCTGCTCGACGTGCAAGAGCGGACGTTGCGTCGCTACCGCGAC
GACCTCGGCGAGTACCCGTGCTTCGACAGCTTCGACGACGACCTGTGCTTCCGCTGCGCGGGGACGGGGCGC
TACGTGCTGGCCCTGGACTCGCTGCTGAAGGCTCCCGCCGAGTCGCTACAGGCCTGCGCCGGACGCTGGCTG
CCGGCCGAGGAACTGCCGCGGCGGCGCTACTGGGAGCGCCTGGCGTTTCCCTCGCGCCCTCAGTAG

Translation:

MDDRMSDKPLGRLLLEGLGEIAWIAVLVALGVLLPLPLVALGWALLLGAEWAMDRWRGKVPYRLQQALFFWV
LGGGIALGQALPGFWLGLGGGLLAVIGGVLLQIRFERGLRLERQAPQALDVPLPAGGSAWGGEAPERTPEGE
AIRLFDGGEIAMGGPLVCHYLMPDGCFIPDCNPSARFSSDGRHFVSPIPSRGAWGLAIFDRQERLLYRCAVD
NFWELDSVTEREVIGRHSPLTSNAPQRLELQALKAGSEAEAFVAIGDLWLPESEWQRWSGDLRAQPLPSPLG
GPALEIRPWLPASLLALDDPFAPLRANRGELWINGEASGLYLSREAPPLAWNDDGRALALQAAGEPLGQDTY
WLWREDGGLRALGAPWSALPAEPHAGGPELLGLEDGWLRFGLDLAQPCLTYERYGTLGSYSHSSLYLLHARD
ADDRPRWREADMPRLDLLLPLDGAAGRPGCLLQSAPLADGSRAVWEWLRDDQEAERGAYALRLGDWRLDGEW
TLDHRVSDCGRYLALVAFAEAPTLPQRLAILDSRERRLEWLAEPLADLHLQGFIDGHVHLLHLLGRNAYQPP
GGPGEGDPGLLRRFDEGLPEPGAWHAFGRFHDDWRHYYEQARVAFDGTAWRLCPASRWLDAPPRPWSDGNFV
LPSVGAKDAAWGFGFHYEGMHRDEDVRAGFSRDGYLLTASGIGLGNLAAPMIWSADGRYLALTRHVQRYEES
ELERDQWRLLLLDVQERTLRRYRDDLGEYPCFDSFDDDLCFRCAGTGRYVLALDSLLKAPAESLQACAGRWL
PAEELPRRRYWERLAFPSRPQ*

AnnotationID:6946 GeneID:6945

AnnotatorUID: danlee

Modification Date/Time: 2006-02-08 16:04:41

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA5412

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|9951738|gb|AAG08797.1|  hypothetical protein PA5412 [Pseudomonas aeruginosa PAO1]
 gi|15600605|ref|NP_254099.1|  hypothetical protein PA5412 [Pseudomonas aeruginosa PAO1]
Length=837

 Score = 1696 bits (4392),  Expect = 0.0
 Identities = 807/813 (99%), Positives = 809/813 (99%), Gaps = 0/813 (0%)

gi|84324993|ref|ZP_00973044.1|  hypothetical protein Paer2_01003798 [Pseudomonas aeruginosa 2192]
Length=809

 Score = 1678 bits (4345),  Expect = 0.0
 Identities = 798/809 (98%), Positives = 802/809 (99%), Gaps = 0/809 (0%)

gi|84318174|ref|ZP_00966603.1|  hypothetical protein PaerC_01004166 [Pseudomonas aeruginosa C3719]
Length=1068

 Score = 1605 bits (4157),  Expect = 0.0
 Identities = 765/786 (97%), Positives = 770/786 (97%), Gaps = 0/786 (0%)

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

Confirmed frame-shift results in truncation of first 24 aa of PA5412.

ReferenceID:13580

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30969

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6945

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

8054 PA5412_tr translation of PA5412 837 96.41 96.65 24 4392.0

203047 gb|AAG08797.1|AE004953_11 (AE004953) hypothetical protein PA5412 [Pseudomonas aeruginosa PAO1] 837 96.41 96.65 24 4392.0

GC ORFID: `49947`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5627251`	Stop: `5624810`
Length: `2442`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA5412 translation of PA5412`	Homolog Bit Score `1696.0`
Other Homologs: `t_PA5412 translation of PA5412 (BLASTP 1696)`
GC ORF Sequence
ATGGATGATCGGATGTCAGACAAGCCGCTCGGCCGCTTGTTGCTCGAAGGCCTCGGCGAGATCGCCTGGATC GCCGTGCTGGTGGCCCTTGGCGTCCTCCTGCCGTTGCCGCTGGTAGCGCTGGGTTGGGCGCTGCTGCTGGGC GCCGAGTGGGCCATGGATCGTTGGCGCGGCAAGGTGCCGTATCGCCTGCAACAGGCGCTGTTCTTCTGGGTT CTGGGTGGCGGCATCGCCCTGGGCCAGGCACTGCCGGGCTTCTGGCTGGGACTGGGCGGTGGCTTGCTGGCG GTGATCGGCGGCGTGCTGCTGCAGATCCGTTTCGAGCGTGGCCTGCGCCTGGAGCGCCAGGCTCCGCAGGCG CTGGACGTACCGCTGCCGGCGGGAGGTAGCGCCTGGGGCGGCGAAGCGCCCGAGCGAACCCCCGAGGGCGAG GCGATCCGCCTGTTCGACGGCGGCGAGATCGCCATGGGCGGCCCGCTGGTATGCCACTACCTGATGCCCGAC GGTTGCTTCATCCCCGACTGCAATCCTTCGGCACGCTTTTCCAGCGATGGCCGCCACTTCGTTTCGCCGATA CCGAGCCGAGGCGCGTGGGGCCTGGCGATCTTCGACCGGCAGGAGCGGTTGCTTTACCGCTGTGCCGTGGAC AACTTCTGGGAGCTGGACAGCGTCACCGAGCGCGAGGTGATCGGCCGGCACAGCCCGCTGACGTCCAACGCA CCGCAGCGCCTCGAGCTGCAGGCGCTCAAGGCCGGCAGCGAGGCCGAGGCCTTCGTTGCCATCGGTGACCTC TGGCTGCCCGAAAGCGAATGGCAGCGCTGGAGCGGGGATCTGCGCGCGCAACCGCTACCGTCCCCGCTTGGC GGGCCCGCGCTGGAAATCCGCCCCTGGCTGCCGGCCAGCCTGCTGGCCCTGGACGATCCTTTCGCGCCGCTG CGCGCCAACCGCGGCGAGCTGTGGATAAACGGCGAGGCCAGCGGCCTCTACCTGTCGCGGGAAGCGCCGCCA TTGGCTTGGAACGATGACGGCCGGGCGCTGGCGCTGCAGGCAGCAGGCGAGCCCCTGGGGCAGGATACCTAC TGGCTTTGGCGAGAGGACGGCGGCCTGCGTGCGCTGGGCGCGCCGTGGTCGGCGTTGCCCGCCGAGCCCCAT GCCGGTGGACCCGAACTGCTCGGGCTGGAGGATGGCTGGCTGCGTTTCGGCCTGGACCTGGCGCAACCCTGC CTGACCTACGAACGCTACGGCACGCTGGGTTCGTACAGCCATTCCAGCCTCTACCTTCTGCACGCTCGCGAT GCGGACGACCGGCCGCGCTGGCGCGAGGCCGACATGCCGCGCCTGGACCTGTTGCTGCCCCTGGATGGCGCG GCCGGCAGGCCGGGATGCCTGTTGCAGAGCGCACCGCTGGCCGATGGCAGCCGGGCCGTCTGGGAGTGGTTG CGCGACGATCAGGAGGCGGAGCGCGGCGCCTATGCCTTGCGCCTGGGCGACTGGCGCCTGGATGGCGAGTGG ACGCTCGACCACCGCGTGTCCGATTGCGGTCGCTACCTGGCCCTGGTGGCCTTCGCCGAGGCGCCGACCCTG CCGCAGCGCCTGGCCATACTCGATAGCCGGGAGCGGCGTCTGGAGTGGCTCGCCGAGCCGCTGGCCGATCTA CACCTGCAAGGTTTCATCGATGGCCATGTGCATCTGCTCCACCTGCTCGGCCGCAACGCCTACCAGCCGCCG GGCGGGCCGGGCGAAGGCGACCCCGGCCTGTTGCGCCGCTTCGACGAAGGCTTGCCCGAGCCCGGCGCCTGG CACGCATTCGGCCGCTTCCACGACGACTGGCGGCATTACTACGAGCAGGCGCGGGTGGCGTTCGATGGCACG GCCTGGCGGCTGTGCCCCGCGTCGCGCTGGCTGGACGCACCGCCGCGGCCCTGGAGCGACGGCAACTTCGTC TTGCCGTCGGTGGGCGCGAAGGACGCCGCCTGGGGCTTCGGTTTCCACTACGAGGGCATGCACCGCGACGAG GACGTGCGCGCCGGGTTCAGCCGCGATGGCTACCTGCTGACCGCGTCGGGCATCGGCTTGGGCAACCTGGCG GCGCCAATGATCTGGTCGGCGGACGGTCGCTACCTGGCGCTGACCCGGCACGTCCAGCGCTACGAGGAAAGC GAGCTGGAGCGGGACCAGTGGCGCCTGCTGCTGCTCGACGTGCAAGAGCGGACGTTGCGTCGCTACCGCGAC GACCTCGGCGAGTACCCGTGCTTCGACAGCTTCGACGACGACCTGTGCTTCCGCTGCGCGGGGACGGGGCGC TACGTGCTGGCCCTGGACTCGCTGCTGAAGGCTCCCGCCGAGTCGCTACAGGCCTGCGCCGGACGCTGGCTG CCGGCCGAGGAACTGCCGCGGCGGCGCTACTGGGAGCGCCTGGCGTTTCCCTCGCGCCCTCAGTAG