ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6936

TrivialName: PA14_70960

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_70960

PAO1 Ortholog Locus:

Sequence Length: 2148

Protein Length: 715

Start: 6322161

Stop: 6324308

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAN70627.1|AE016706_2 (AE016793) hypothetical protein [Pseudomonas putida KT2440] Identities = 91/164 (55%), Positives = 106/164 (64%)

Sequence:

ATGAGCCAGGGTGGTGAGACCGTTCTCGCGACCGACACCGGATTGCTTGTAACCGCCGACCGGCATTTCCGC
CGGCGACTCGCCCCAGGTATTGATCCAGCAGATGCCGGCTTCCAGGCGATGGATGGCGCGGTGGGCGCGGGC
CAGGTCCTGGGTCACGACGCCGGCGGCGAGGCCGTACTCGGTATCGTTGGCGCGGCGGATCGCCTCGTCTTC
GTCGTCATAGACCAGGATGCTCATCACCGGGCCGAAGATTTCCTCGCGGACGATGGTCATGTCGTCGCTGCA
ATCGGTGAACACGGTCGGCGCGACGTAGGCGCCATTGCCGAACGCTCCATCGGTCACACGCTCGCCGCCGCA
CAGCAGGCGAGCCTTCTGCGCCTTGCCGGACTCGATGTAGCCGAGCACGCTTTCCATGTGCGGGAAGCTGAC
CAGCGGGCCGAAGTTGGTGTTCTCGTCCTGCGGGTCGCCGAGACGGATGCGCTGCACGCGCTCCAGTACCTT
GGCTTCGAAGCGGGCCTGCTGGGAACGGTGGATGAACACCCGGGTGCCATTGGTGCAGACCTGGCCGGAGCT
GAAGAAGTTGGCCATGACGGCGATGTCGGCGGCGCGGTCGAGGTCTGCGTCGGGGAAGATGATCAGCGGGGA
CTTGCCGCCCAGCTCCATGGTCACTTCCTTCAGCGACGAGCTGGAAGCGCTGGCCATGACTTTCTTGCCGGT
GGAGGTGCCGCCGGTGAAGGAGATCTTCTCGATCAGCGGGTGCTCGGTCAGCCACTGGCCGACTTCGCGTCC
GCTGCCGGTGAGCACGTTGAACACGCCGTCCGGCACGCCGGCCTCGGTGTAGATCTCGGCCAGCTTGAGGGT
GGTCAGCGGGGTGACTTCGCTGGGCTTGAAGATCATCGCGTTGCCGGCAGCGAGGGCCGGGGCGGATTTCCA
CAGGGCGATCTGCACCGGGTAGTTCCAGGCGCCAATGCCGGCGACCACGCCCAGCGGCTCGCGGCGGGTGTA
GACGAAACTGGTTTCGCGCAGGGGAATCTGCTCGCCTTCGATGGCCGGGACCAGGCCGGCGTAGTACTCGAG
CACGTCGGCGCCGGTGACGATGTCCACCGAGCGGGTTTCCGCCAGCGGCTTGCCGGTATCCAGGGTTTCCAG
GGCGGCCAGTTCGTCGTTGCGCTCGCGGAGGATGTCGACGGCGCGACGGAGGATGCGCGAGCGCTGCATGGC
GGTCATCGCCGCCCACACCTTCTGCCCCTCGACGGCGCTCTGCACGGCCCGCTCGACGTCTTCCCTGGAAGC
CCGCTGGACCTTGGCGAGCACTTCGCCGTTGGCCGGGTTGATGGTCTCGAAGGTGGCGCCACTGCTGGCCTC
CACGTAGCGACCGCCAATGTAGAGCTTCTGTTCTTCGAATCGGGCCATGTTGCAGTCCTCTCTTATCGGTAT
CGCAGGCGCAAGGCGGCGCCGCGGGGGTTTTCGTCCCTACCCCGACTGTTTTGCCAACTGCTGGTCGAGGTA
GTCGTAAGCGATGTTCAAGGCCTCGTCGGTATCGAAGGCGTCGCCGGTCAGCGCGCCACGCAACCACAGGCC
GTCGATCAGGGCCGCCAGGCCGCGTGCCGCGGCGCGGGCGTCGTCCGCCGAGAGCTGGCGGCGGAACTGGTA
GCACAGGTTCGAATACAGGCGaTGGTCGTTGACCCGCTGCAATCGACGCAGTGCCGGCTGGTGCATGctGGT
CGCCCAGAACGCCAGCCAGGTCTTCATCGCCGGACCATTGACCTGGCTGTCGTCGAAGTTGCCTTCGACGAT
CGCTCGCAGGTGCGCCCTCGGACTGTCGTCGTAGAGCGCCGCGCGGCGTTCGCGTACGGCCTTGCTCAAGGC
GCTGAGCAGGTGCCGCATGGTCGCTTCCAGCAAGCCGTTCTTGTCCTGGAAGTAGTGGCTGATGATGCCGTT
GGAAACACCCGCCAGGCGGGCAATCAGGGCGATGCTGGCGTCTCCCATGCCGACCTGATCGACCGCCTCCAG
GGTGGCGTGAATCAGTTGCGAGCGGCGGATGGGCTGCATACCGACCTTGGGCATTGCTATCTCCTCTCGTCG
ATAGGTGCGTGCGGGCACCGACCGACGTCATTGGTGGCCAGTCTATTTTGTTTTTATTGA

Translation:

MSQGGETVLATDTGLLVTADRHFRRRLAPGIDPADAGFQAMDGAVGAGQVLGHDAGGEAVLGIVGAADRLVF
VVIDQDAHHRAEDFLADDGHVVAAIGEHGRRDVGAIAERSIGHTLAAAQQASLLRLAGLDVAEHAFHVREAD
QRAEVGVLVLRVAETDALHALQYLGFEAGLLGTVDEHPGAIGADLAGAEEVGHDGDVGGAVEVCVGEDDQRG
LAAQLHGHFLQRRAGSAGHDFLAGGGAAGEGDLLDQRVLGQPLADFASAAGEHVEHAVRHAGLGVDLGQLEG
GQRGDFAGLEDHRVAGSEGRGGFPQGDLHRVVPGANAGDHAQRLAAGVDETGFAQGNLLAFDGRDQAGVVLE
HVGAGDDVHRAGFRQRLAGIQGFQGGQFVVALAEDVDGATEDARALHGGHRRPHLLPLDGALHGPLDVFPGS
PLDLGEHFAVGRVDGLEGGATAGLHVATANVELLFFESGHVAVLSYRYRRRKAAPRGFSSLPRLFCQLLVEV
VVSDVQGLVGIEGVAGQRATQPQAVDQGRQAACRGAGVVRRELAAELVAQVRIQAMVVDPLQSTQCRLVHAG
RPERQPGLHRRTIDLAVVEVAFDDRSQVRPRTVVVERRAAFAYGLAQGAEQVPHGRFQQAVLVLEVVADDAV
GNTRQAGNQGDAGVSHADLIDRLQGGVNQLRAADGLHTDLGHCYLLSSIGACGHRPTSLVASLFCFY*

AnnotationID:6937 GeneID:6936

AnnotatorUID: diggins

Modification Date/Time: 2005-03-17 08:08:35

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:13563

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30951

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6936

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

203046 gb|AAN70627.1|AE016706_2 (AE016793) hypothetical protein [Pseudomonas putida KT2440] 722 12.74 14.81 548 394.0

GC ORFID: `49938`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5585850`	Stop: `5587997`
Length: `2148`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAGCCAGGGTGGTGAGACCGTTCTCGCGACCGACACCGGATTGCTTGTAACCGCCGACCGGCATTTCCGC CGGCGACTCGCCCCAGGTATTGATCCAGCAGATGCCGGCTTCCAGGCGATGGATGGCGCGGTGGGCGCGGGC CAGGTCCTGGGTCACGACGCCGGCGGCGAGGCCGTACTCGGTATCGTTGGCGCGGCGGATCGCCTCGTCTTC GTCGTCATAGACCAGGATGCTCATCACCGGGCCGAAGATTTCCTCGCGGACGATGGTCATGTCGTCGCTGCA ATCGGTGAACACGGTCGGCGCGACGTAGGCGCCATTGCCGAACGCTCCATCGGTCACACGCTCGCCGCCGCA CAGCAGGCGAGCCTTCTGCGCCTTGCCGGACTCGATGTAGCCGAGCACGCTTTCCATGTGCGGGAAGCTGAC CAGCGGGCCGAAGTTGGTGTTCTCGTCCTGCGGGTCGCCGAGACGGATGCGCTGCACGCGCTCCAGTACCTT GGCTTCGAAGCGGGCCTGCTGGGAACGGTGGATGAACACCCGGGTGCCATTGGTGCAGACCTGGCCGGAGCT GAAGAAGTTGGCCATGACGGCGATGTCGGCGGCGCGGTCGAGGTCTGCGTCGGGGAAGATGATCAGCGGGGA CTTGCCGCCCAGCTCCATGGTCACTTCCTTCAGCGACGAGCTGGAAGCGCTGGCCATGACTTTCTTGCCGGT GGAGGTGCCGCCGGTGAAGGAGATCTTCTCGATCAGCGGGTGCTCGGTCAGCCACTGGCCGACTTCGCGTCC GCTGCCGGTGAGCACGTTGAACACGCCGTCCGGCACGCCGGCCTCGGTGTAGATCTCGGCCAGCTTGAGGGT GGTCAGCGGGGTGACTTCGCTGGGCTTGAAGATCATCGCGTTGCCGGCAGCGAGGGCCGGGGCGGATTTCCA CAGGGCGATCTGCACCGGGTAGTTCCAGGCGCCAATGCCGGCGACCACGCCCAGCGGCTCGCGGCGGGTGTA GACGAAACTGGTTTCGCGCAGGGGAATCTGCTCGCCTTCGATGGCCGGGACCAGGCCGGCGTAGTACTCGAG CACGTCGGCGCCGGTGACGATGTCCACCGAGCGGGTTTCCGCCAGCGGCTTGCCGGTATCCAGGGTTTCCAG GGCGGCCAGTTCGTCGTTGCGCTCGCGGAGGATGTCGACGGCGCGACGGAGGATGCGCGAGCGCTGCATGGC GGTCATCGCCGCCCACACCTTCTGCCCCTCGACGGCGCTCTGCACGGCCCGCTCGACGTCTTCCCTGGAAGC CCGCTGGACCTTGGCGAGCACTTCGCCGTTGGCCGGGTTGATGGTCTCGAAGGTGGCGCCACTGCTGGCCTC CACGTAGCGACCGCCAATGTAGAGCTTCTGTTCTTCGAATCGGGCCATGTTGCAGTCCTCTCTTATCGGTAT CGCAGGCGCAAGGCGGCGCCGCGGGGGTTTTCGTCCCTACCCCGACTGTTTTGCCAACTGCTGGTCGAGGTA GTCGTAAGCGATGTTCAAGGCCTCGTCGGTATCGAAGGCGTCGCCGGTCAGCGCGCCACGCAACCACAGGCC GTCGATCAGGGCCGCCAGGCCGCGTGCCGCGGCGCGGGCGTCGTCCGCCGAGAGCTGGCGGCGGAACTGGTA GCACAGGTTCGAATACAGGCGaTGGTCGTTGACCCGCTGCAATCGACGCAGTGCCGGCTGGTGCATGctGGT CGCCCAGAACGCCAGCCAGGTCTTCATCGCCGGACCATTGACCTGGCTGTCGTCGAAGTTGCCTTCGACGAT CGCTCGCAGGTGCGCCCTCGGACTGTCGTCGTAGAGCGCCGCGCGGCGTTCGCGTACGGCCTTGCTCAAGGC GCTGAGCAGGTGCCGCATGGTCGCTTCCAGCAAGCCGTTCTTGTCCTGGAAGTAGTGGCTGATGATGCCGTT GGAAACACCCGCCAGGCGGGCAATCAGGGCGATGCTGGCGTCTCCCATGCCGACCTGATCGACCGCCTCCAG GGTGGCGTGAATCAGTTGCGAGCGGCGGATGGGCTGCATACCGACCTTGGGCATTGCTATCTCCTCTCGTCG ATAGGTGCGTGCGGGCACCGACCGACGTCATTGGTGGCCAGTCTATTTTGTTTTTATTGA