ViewGene
Locus Name:
GeneID:
Location:

GeneID:6927
TrivialName: PA14_70460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70460
PAO1 Ortholog Locus:
Sequence Length:2166
Protein Length:721
Start: 6281294
Stop: 6279129
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA17104.1| (U00011) p1177c; B1177_F1_12 [Mycobacterium leprae]
Identities = 38/109 (34%), Positives = 53/109 (48%)
Sequence:
GTGGGCGCGGGGGCGCCGGATGACACAGGAAAAAGCGGGTCAGCTGCGCAGGCGGGTGATCCGGATCACTCC
CTTGAGGGCGCGCAGCTTCTTGATGACGCGGGCCAGGTGGACGCGATCGTGCACGCTGACGACCAGCTGGAC
CACGCTGATGCGACCGTCGCGCTCGTCCATGCTGATCTTCTCGATGTTGCCGTCGGCCGCGTTGACGCTGGT
GGCGAGCAGGGCGATCAGGCCACGCTGGTGCTCCAGCTCGACGCGCAGTTCGACATTGAATTCGCCGGTGAC
ATCCTTGGCCCAGCTGAGCTGGATGCATTTTTCCGGGTTGTGGCGTACTTCGCTGATGTTCTTGCAGCTTTC
CAAGTGCACCACCATGCCCTTGCCGGCGGACAGGTGGCCGACGATCGGGTCGCCGGGAATCGGCGTGCAGCA
CTTGGCGTAGCTCAGGACCAGGCCTTCGGTGCCGCGGATCGCCAGCGGACCCTCGGCGCTCGGCGCTTCCTC
GCCCTCGCTGGACAGCAGGCGGCGGGCGACCACGTAGGCCATGCGGTTGCCCAGGCCGATCTCTTCCAGCAG
GTCCTCGAAGACTTCCATGCGGTACTCGGCGAGCACGGCCTGGATGCGTTCCTGGGGAATCTTCTCGAGGTG
GCTGTCGAAGCCGGTGAGGGTCTTGTTCAGCAGGCGCTCGCCGAGGTTGATCGACTCGGAGCGGCGTTGCAG
CTTGAGCGCATGGCGGATATGGGTGCGCGCCTTGCCGGTGACCACGAAGCTCAGCCAGGCCGGGTTCGGCCG
GGCGCCCGGGGCGGTGACGATTTCCACCGTCTGGCCGCTCTGCAACGGCTCGGAGAGCGGCGCCAGGCGGCG
GTTGATGCGGCAGGCGATGCAACTGTTGCCGACGTCGGTGTGCACCGCGTAGGCGAAGTCGACCGCGGTGGA
ACCCTTGGGCAGTTCCATGATGCGGCCCTTGGGCGTGAACACGTAGACCTCGTCCGGGAACAGGTCGATCTT
CACGTTCTCGATGAATTCCAGCGAGTTGCCGGCGCGCTGCTGCAGTTCCAGCACGCCCTTCACCCATTGCCG
GGCGCGGGCATGGGTGCCCTTGGGCGTCTCGTCGTTGGACTTGTACAGCCAGTGCGCGGCGATCCCGTGGTT
GGCCATCTCCTCCATCTCGCGGGTACGGATCTGGATCTCGATGGGCACCCCGTGCATGCCGAACAGGGTGGT
ATGCAGCGACTGGTAGCCGTTGGCCTTGGGAATCGCGATGTAGTCCTTGAAGCGTCCGGGGAACGGCTTGTA
CAGGCTGTGCACGGCGCCCAGTACGCGATAGCAGGTATCGACCTTGTCGACGATGATGCGGAAGGCGTAGAC
GTCCATGATCTCGTTGAACGCCTTACGCTTGCCGCGCATCTTCTGGTAGATGCTGTAGAGGTGCTTCTCGCG
GCCGATCACCTGGCCTTCCATGCCTTCGCGGGCGAGGCAGTTGACCAGCGACTCCTGGATCTTGCCGACGAT
CTCGCGGCGGTTGCCGCGGGCCTTCTTCACCGCCTGGCGGATGCGCTCGGCGCGCATCGGGTGCATGGCCTT
GAAACCGAGGTCCTCGAACTCCACGCGCATGGTGTGCATGCCCAGGCGGTTGGCGATGGGCGCGTAGATTTC
CAGGGTTTCCTTGGCGATGCGCCGGCGCTTCTCGCCGGACAGCACCTCGAGGGTGCGCATGTTGTGCAGGCG
GTCGGCCAGCTTGACCAGGATCACGCGGATATCGCGGGCCATGGCCATGGCCATCTTCTGGAAGTTCTCGGC
CTGGGCCTCGGCCTTGGTCTCGAAGTTCATCTGGGTCAGCTTGCTGACCCCGTCGACCAGTTCCGAAACCGT
CTCGCCGAACTGCGCGGTGAGCGCTTCCTTGGCGATGCCGGTGTCCTCGATCACGTCGTGCAGCATCGCGGC
CATCAGGCTCTGATGGTCCATGTGCATGTCGGCGAGGATGTTGGAGACCGCCAGCGGGTGGGTCACGTACGG
CTCGCCGCTGCGGCGGCGTTGCCCGTCGTGGGCCTGCTCGGCGTAGTAGTAGGCGCGGCGGACCAGGTTGAC
CTGGTCCGGCCCGAGGTAGCTCGACAGTCTGTCGGCGAAGGCGTCTATGCCCGGCAAGGGTTCACCCCCTGC
CCGTAG
Translation:
MGAGAPDDTGKSGSAAQAGDPDHSLEGAQLLDDAGQVDAIVHADDQLDHADATVALVHADLLDVAVGRVDAG
GEQGDQATLVLQLDAQFDIEFAGDILGPAELDAFFRVVAYFADVLAAFQVHHHALAGGQVADDRVAGNRRAA
LGVAQDQAFGAADRQRTLGARRFLALAGQQAAGDHVGHAVAQADLFQQVLEDFHAVLGEHGLDAFLGNLLEV
AVEAGEGLVQQALAEVDRLGAALQLERMADMGARLAGDHEAQPGRVRPGARGGDDFHRLAALQRLGERRQAA
VDAAGDATVADVGVHRVGEVDRGGTLGQFHDAALGREHVDLVREQVDLHVLDEFQRVAGALLQFQHALHPLP
GAGMGALGRLVVGLVQPVRGDPVVGHLLHLAGTDLDLDGHPVHAEQGGMQRLVAVGLGNRDVVLEASGERLV
QAVHGAQYAIAGIDLVDDDAEGVDVHDLVERLTLAAHLLVDAVEVLLAADHLAFHAFAGEAVDQRLLDLADD
LAAVAAGLLHRLADALGAHRVHGLETEVLELHAHGVHAQAVGDGRVDFQGFLGDAPALLAGQHLEGAHVVQA
VGQLDQDHADIAGHGHGHLLEVLGLGLGLGLEVHLGQLADPVDQFRNRLAELRGERFLGDAGVLDHVVQHRG
HQALMVHVHVGEDVGDRQRVGHVRLAAAAALPVVGLLGVVVGAADQVDLVRPEVARQSVGEGVYARQGFTPC
P*
AnnotationID:6928GeneID:6927
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 18:06:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16671




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30933




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49929How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5544983Stop: 5542818

          
Length: 2166


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3138 related to: gi|141592|sp|P17581|YZST_ECOLI VERY HYPOTHETICAL 77.2 KD PROTEIN IN SPOT 3'REGION pir||Q3ECS7 hypothetical 77K protein (spoT 3' region) - Escherichia coliHomolog Bit Score 843.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3138 related to: gi|141592|sp|P17581|YZST_ECOLI VERY HYPOTHETICAL 77.2 KD PROTEIN IN SPOT 3'REGION pir||Q3ECS7 hypothetical 77K protein (spoT 3' region) - Escherichia coli (BLASTP 843)

          
GC ORF Sequence

           
GTGGGCGCGGGGGCGCCGGATGACACAGGAAAAAGCGGGTCAGCTGCGCAGGCGGGTGATCCGGATCACTCC 
CTTGAGGGCGCGCAGCTTCTTGATGACGCGGGCCAGGTGGACGCGATCGTGCACGCTGACGACCAGCTGGAC 
CACGCTGATGCGACCGTCGCGCTCGTCCATGCTGATCTTCTCGATGTTGCCGTCGGCCGCGTTGACGCTGGT 
GGCGAGCAGGGCGATCAGGCCACGCTGGTGCTCCAGCTCGACGCGCAGTTCGACATTGAATTCGCCGGTGAC 
ATCCTTGGCCCAGCTGAGCTGGATGCATTTTTCCGGGTTGTGGCGTACTTCGCTGATGTTCTTGCAGCTTTC 
CAAGTGCACCACCATGCCCTTGCCGGCGGACAGGTGGCCGACGATCGGGTCGCCGGGAATCGGCGTGCAGCA 
CTTGGCGTAGCTCAGGACCAGGCCTTCGGTGCCGCGGATCGCCAGCGGACCCTCGGCGCTCGGCGCTTCCTC 
GCCCTCGCTGGACAGCAGGCGGCGGGCGACCACGTAGGCCATGCGGTTGCCCAGGCCGATCTCTTCCAGCAG 
GTCCTCGAAGACTTCCATGCGGTACTCGGCGAGCACGGCCTGGATGCGTTCCTGGGGAATCTTCTCGAGGTG 
GCTGTCGAAGCCGGTGAGGGTCTTGTTCAGCAGGCGCTCGCCGAGGTTGATCGACTCGGAGCGGCGTTGCAG 
CTTGAGCGCATGGCGGATATGGGTGCGCGCCTTGCCGGTGACCACGAAGCTCAGCCAGGCCGGGTTCGGCCG 
GGCGCCCGGGGCGGTGACGATTTCCACCGTCTGGCCGCTCTGCAACGGCTCGGAGAGCGGCGCCAGGCGGCG 
GTTGATGCGGCAGGCGATGCAACTGTTGCCGACGTCGGTGTGCACCGCGTAGGCGAAGTCGACCGCGGTGGA 
ACCCTTGGGCAGTTCCATGATGCGGCCCTTGGGCGTGAACACGTAGACCTCGTCCGGGAACAGGTCGATCTT 
CACGTTCTCGATGAATTCCAGCGAGTTGCCGGCGCGCTGCTGCAGTTCCAGCACGCCCTTCACCCATTGCCG 
GGCGCGGGCATGGGTGCCCTTGGGCGTCTCGTCGTTGGACTTGTACAGCCAGTGCGCGGCGATCCCGTGGTT 
GGCCATCTCCTCCATCTCGCGGGTACGGATCTGGATCTCGATGGGCACCCCGTGCATGCCGAACAGGGTGGT 
ATGCAGCGACTGGTAGCCGTTGGCCTTGGGAATCGCGATGTAGTCCTTGAAGCGTCCGGGGAACGGCTTGTA 
CAGGCTGTGCACGGCGCCCAGTACGCGATAGCAGGTATCGACCTTGTCGACGATGATGCGGAAGGCGTAGAC 
GTCCATGATCTCGTTGAACGCCTTACGCTTGCCGCGCATCTTCTGGTAGATGCTGTAGAGGTGCTTCTCGCG 
GCCGATCACCTGGCCTTCCATGCCTTCGCGGGCGAGGCAGTTGACCAGCGACTCCTGGATCTTGCCGACGAT 
CTCGCGGCGGTTGCCGCGGGCCTTCTTCACCGCCTGGCGGATGCGCTCGGCGCGCATCGGGTGCATGGCCTT 
GAAACCGAGGTCCTCGAACTCCACGCGCATGGTGTGCATGCCCAGGCGGTTGGCGATGGGCGCGTAGATTTC 
CAGGGTTTCCTTGGCGATGCGCCGGCGCTTCTCGCCGGACAGCACCTCGAGGGTGCGCATGTTGTGCAGGCG 
GTCGGCCAGCTTGACCAGGATCACGCGGATATCGCGGGCCATGGCCATGGCCATCTTCTGGAAGTTCTCGGC 
CTGGGCCTCGGCCTTGGTCTCGAAGTTCATCTGGGTCAGCTTGCTGACCCCGTCGACCAGTTCCGAAACCGT 
CTCGCCGAACTGCGCGGTGAGCGCTTCCTTGGCGATGCCGGTGTCCTCGATCACGTCGTGCAGCATCGCGGC 
CATCAGGCTCTGATGGTCCATGTGCATGTCGGCGAGGATGTTGGAGACCGCCAGCGGGTGGGTCACGTACGG 
CTCGCCGCTGCGGCGGCGTTGCCCGTCGTGGGCCTGCTCGGCGTAGTAGTAGGCGCGGCGGACCAGGTTGAC 
CTGGTCCGGCCCGAGGTAGCTCGACAGTCTGTCGGCGAAGGCGTCTATGCCCGGCAAGGGTTCACCCCCTGC 
CCGTAG