ViewGene

Locus Name:
GeneID:
Location:

GeneID:6914
TrivialName: PA14_69960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69960
PAO1 Ortholog Locus:
Sequence Length:2331
Protein Length:776
Start: 6240637
Stop: 6242967
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD93184.1| (BX248335) CONSERVED HYPOTHETICAL PROLINE AND THREONINE RICH PROTEIN [Mycobacterium bovis subsp. bovis AF2122/97]
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Sequence:
ATGCGCCGGGTAGGCTTCTGGCTCCGGCGCGTCCAGGGTCGCCTTGCCCAGTTCGAGAATCTCGCTCAGCTT
CAGCTTGCGCTTGAGCCAACCCAGCGCCCGCAGCAGGTCCTGCTCGACCTCGTCGAAATCGCTGCCCAGGGG
AAACTCCGGCAGCGCCGCTGCGTGGGCCTGGTGCAAGGCCTGCAGGCGCTCCGGGGTATTGTTGCGATAGCG
TTCGGGCAGGACGAAATCCTTCGGCAGCTTGCCGGCCGACTGGGCCTGCTCGGCCAGCGCCTGCTGGAAACG
CGAGTCGGCGATGGCCAGCAGCGCGGCGATCACTTCCGCGTCGTTCTTGCCGCGCAGGTCGGCGATCCCATA
CTCGGTCACCACCATGTCACGCAAGTGCCGGGGAATGGTGGTGTGGGCGTACTGCCAGACGATGTTCGAACT
GACTTCCCCGCCGGATTCGCGCCAGCTACGCAGCATCAGGATCGAACGTGCGCCCTCCAGCTCGTGGGCCTG
GGCGACGAAGTTGTACTGCCCGCCGACGCCACTGAGCACCCGGCCGTCCTCCAGCTGGTCGGCGACCCCGGC
GCCGAGCAGGGTCACGGTGAAGGCGCTGTTGATGAAGCGCGCGTCGCGCCGCTGCAGGCGCTTCAGCTCTTC
CTGGCGGTACAGGTTGTTGACGAAGCCGATGCCGGTCATGCCGATCCCGGCGCGCTCTTCCAGCGACATCTC
GCGCAGGCGCCGGTAGAACGCCAACGGACCGAGGAAGAAGCCGCCGTGCAGCCACACCCCGCCCTCCTCCGG
CGCCTCGCCGCGCTCGGCAGCACGCTGTCGCGCTTCGTCGGGGTAGACCCGGCGGCTCAGCACGCCGGCCTC
GGCCAGCGCCAGCAGACCCGGCACGAACATCTCGCTGCAACCGTAGAGCCCCCGGCGGAACGGCTCCAGGCC
ACCATCGCGCTCGACCGTCTCGGCCCAGCGCGCACGCACCCCCAGCTCGTCGATCAACGCCCGGTAGGTGGC
GTTGTCGCGCTGGCGCAGCAGCAAGGCGGCGGTCAGCGCGTCGCCCATCGAGCCGATGCCGATCTGCAGGGT
GCCGCCGTCGCGCACCAGCGCGCTGGCGTGGAGACCGATGCAGTGATCCTGCAGGTTGACCGGCATGTTCGG
CGTGGAGAACAGCCGGCTGCTTTCCGCCGGCGCGTCGATCAGCAGGTCGAATACCGACTCCTCGACCTCGGC
GTCACCCGGCAGGTAGGGCAGGTCATCGTGGACCACGCCGATGGCGACGATGGTCTCGCCAGCGGCGCGACG
CTTCTCCAGCATCGGCAGGAGGTCCAGGGTGATATCCGGGTTGCAGGCCAGGCTCAGCTTGCCCGGCCGCTC
GGGATGCCGCGCCACCAGCTGGGCCACCGCGTTGACGCCCTTGGCATTGATGTCGCGGGCGACGTGGCTGTA
GTTGCAACTGATGTAGTGCTGCTGCGCCGGCGCGCTGTCCAGCAGGCTGCCGGGCTGCAGGTAGAACTCCTC
GACGCGGATGTTCGCCGGCAGTTCGTCGCGGCGCAGGGCGTGCAGGTAATCCAGCTCCGGGTAGTCGGCGAA
GACCCGTTCGGCGAAAGGCTCGAGGAAACGCCGTTGCAGGTCGCCGCCAGCGGCGGGACGCCCCAGGGAAAG
CGCGGTATACAGCGTCAGTTGGCGCTCCGGCAGGGTCCGCAGGCGCTGGTACAACGCATTGACCAGTCGGTT
GGGCTTGCCCAGCCCGAGGGGCAGGCCCATGCGGATCGGGCCCTCGATGGTCTGCAGCAAGTGATCGACTGC
GGCGTCGATGGAACAGGTTCGGCTCAAGACGATGCCCTCCGGCGAATGGGTAGCCGGAAGTTTGGACCCTGT
TTGCCGGCGGGACGATCCGCCAGCGGAAAAAACCCGCACCGCGGATACGAAAAAGCCGCCAGGAGGCGGCTT
TTCGCGACACGGTTCCGGCGTTGTTACAGGCCGGACATATGCTTGATCGCGGCTTTCAGCTCGTCGTCCGAG
CAATCGGCGCAGGTGCCTTTCGGCGGCATGGCGTTGATACCGGAAATCGCCTTGGCCAGCAGGCCATCGAGG
CCGCCCTGCTCCTTGGCGCGCTTGCCCCACTCGGCCTTGTCGCCAACCTTCGGCGCGCCCAGCAGGCCAGTG
CCGTGGCAGGTGTTGCAGGTCTTGCCGACGATGTCTTCGCCGGAACGCGCACCGCCGCCACCGGCGGCTGCC
GCGACGGCGCCGACGCCTTCGCATTCCTTGCCTTGTACGCAGACCTTGCCTACCGGCTCGAGGCGCTTGGCG
ATCGCATCGTCAGTGGTCGTAGCCTGA
Translation:
MRRVGFWLRRVQGRLAQFENLAQLQLALEPTQRPQQVLLDLVEIAAQGKLRQRRCVGLVQGLQALRGIVAIA
FGQDEILRQLAGRLGLLGQRLLETRVGDGQQRGDHFRVVLAAQVGDPILGHHHVTQVPGNGGVGVLPDDVRT
DFPAGFAPATQHQDRTCALQLVGLGDEVVLPADATEHPAVLQLVGDPGAEQGHGEGAVDEARVAPLQALQLF
LAVQVVDEADAGHADPGALFQRHLAQAPVERQRTEEEAAVQPHPALLRRLAALGSTLSRFVGVDPAAQHAGL
GQRQQTRHEHLAATVEPPAERLQATIALDRLGPARTHPQLVDQRPVGGVVALAQQQGGGQRVAHRADADLQG
AAVAHQRAGVETDAVILQVDRHVRRGEQPAAFRRRVDQQVEYRLLDLGVTRQVGQVIVDHADGDDGLASGAT
LLQHRQEVQGDIRVAGQAQLARPLGMPRHQLGHRVDALGIDVAGDVAVVATDVVLLRRRAVQQAAGLQVELL
DADVRRQFVAAQGVQVIQLRVVGEDPFGERLEETPLQVAASGGTPQGKRGIQRQLALRQGPQALVQRIDQSV
GLAQPEGQAHADRALDGLQQVIDCGVDGTGSAQDDALRRMGSRKFGPCLPAGRSASGKNPHRGYEKAARRRL
FATRFRRCYRPDICLIAAFSSSSEQSAQVPFGGMALIPEIALASRPSRPPCSLARLPHSALSPTFGAPSRPV
PWQVLQVLPTMSSPERAPPPPAAAATAPTPSHSLPCTQTLPTGSRRLAIASSVVVA*
AnnotationID:6915GeneID:6914
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 12:12:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:13524
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30907
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49916How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5504326Stop: 5506656
Length: 2331
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGCCGGGTAGGCTTCTGGCTCCGGCGCGTCCAGGGTCGCCTTGCCCAGTTCGAGAATCTCGCTCAGCTT
CAGCTTGCGCTTGAGCCAACCCAGCGCCCGCAGCAGGTCCTGCTCGACCTCGTCGAAATCGCTGCCCAGGGG
AAACTCCGGCAGCGCCGCTGCGTGGGCCTGGTGCAAGGCCTGCAGGCGCTCCGGGGTATTGTTGCGATAGCG
TTCGGGCAGGACGAAATCCTTCGGCAGCTTGCCGGCCGACTGGGCCTGCTCGGCCAGCGCCTGCTGGAAACG
CGAGTCGGCGATGGCCAGCAGCGCGGCGATCACTTCCGCGTCGTTCTTGCCGCGCAGGTCGGCGATCCCATA
CTCGGTCACCACCATGTCACGCAAGTGCCGGGGAATGGTGGTGTGGGCGTACTGCCAGACGATGTTCGAACT
GACTTCCCCGCCGGATTCGCGCCAGCTACGCAGCATCAGGATCGAACGTGCGCCCTCCAGCTCGTGGGCCTG
GGCGACGAAGTTGTACTGCCCGCCGACGCCACTGAGCACCCGGCCGTCCTCCAGCTGGTCGGCGACCCCGGC
GCCGAGCAGGGTCACGGTGAAGGCGCTGTTGATGAAGCGCGCGTCGCGCCGCTGCAGGCGCTTCAGCTCTTC
CTGGCGGTACAGGTTGTTGACGAAGCCGATGCCGGTCATGCCGATCCCGGCGCGCTCTTCCAGCGACATCTC
GCGCAGGCGCCGGTAGAACGCCAACGGACCGAGGAAGAAGCCGCCGTGCAGCCACACCCCGCCCTCCTCCGG
CGCCTCGCCGCGCTCGGCAGCACGCTGTCGCGCTTCGTCGGGGTAGACCCGGCGGCTCAGCACGCCGGCCTC
GGCCAGCGCCAGCAGACCCGGCACGAACATCTCGCTGCAACCGTAGAGCCCCCGGCGGAACGGCTCCAGGCC
ACCATCGCGCTCGACCGTCTCGGCCCAGCGCGCACGCACCCCCAGCTCGTCGATCAACGCCCGGTAGGTGGC
GTTGTCGCGCTGGCGCAGCAGCAAGGCGGCGGTCAGCGCGTCGCCCATCGAGCCGATGCCGATCTGCAGGGT
GCCGCCGTCGCGCACCAGCGCGCTGGCGTGGAGACCGATGCAGTGATCCTGCAGGTTGACCGGCATGTTCGG
CGTGGAGAACAGCCGGCTGCTTTCCGCCGGCGCGTCGATCAGCAGGTCGAATACCGACTCCTCGACCTCGGC
GTCACCCGGCAGGTAGGGCAGGTCATCGTGGACCACGCCGATGGCGACGATGGTCTCGCCAGCGGCGCGACG
CTTCTCCAGCATCGGCAGGAGGTCCAGGGTGATATCCGGGTTGCAGGCCAGGCTCAGCTTGCCCGGCCGCTC
GGGATGCCGCGCCACCAGCTGGGCCACCGCGTTGACGCCCTTGGCATTGATGTCGCGGGCGACGTGGCTGTA
GTTGCAACTGATGTAGTGCTGCTGCGCCGGCGCGCTGTCCAGCAGGCTGCCGGGCTGCAGGTAGAACTCCTC
GACGCGGATGTTCGCCGGCAGTTCGTCGCGGCGCAGGGCGTGCAGGTAATCCAGCTCCGGGTAGTCGGCGAA
GACCCGTTCGGCGAAAGGCTCGAGGAAACGCCGTTGCAGGTCGCCGCCAGCGGCGGGACGCCCCAGGGAAAG
CGCGGTATACAGCGTCAGTTGGCGCTCCGGCAGGGTCCGCAGGCGCTGGTACAACGCATTGACCAGTCGGTT
GGGCTTGCCCAGCCCGAGGGGCAGGCCCATGCGGATCGGGCCCTCGATGGTCTGCAGCAAGTGATCGACTGC
GGCGTCGATGGAACAGGTTCGGCTCAAGACGATGCCCTCCGGCGAATGGGTAGCCGGAAGTTTGGACCCTGT
TTGCCGGCGGGACGATCCGCCAGCGGAAAAAACCCGCACCGCGGATACGAAAAAGCCGCCAGGAGGCGGCTT
TTCGCGACACGGTTCCGGCGTTGTTACAGGCCGGACATATGCTTGATCGCGGCTTTCAGCTCGTCGTCCGAG
CAATCGGCGCAGGTGCCTTTCGGCGGCATGGCGTTGATACCGGAAATCGCCTTGGCCAGCAGGCCATCGAGG
CCGCCCTGCTCCTTGGCGCGCTTGCCCCACTCGGCCTTGTCGCCAACCTTCGGCGCGCCCAGCAGGCCAGTG
CCGTGGCAGGTGTTGCAGGTCTTGCCGACGATGTCTTCGCCGGAACGCGCACCGCCGCCACCGGCGGCTGCC
GCGACGGCGCCGACGCCTTCGCATTCCTTGCCTTGTACGCAGACCTTGCCTACCGGCTCGAGGCGCTTGGCG
ATCGCATCGTCAGTGGTCGTAGCCTGA