ViewGene
Locus Name:
GeneID:
Location:

GeneID:6912
TrivialName: PA14_69930
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69930
PAO1 Ortholog Locus:
Sequence Length:570
Protein Length:189
Start: 6239222
Stop: 6239791
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Inactivated 1/31/06. Replaced by PA14_69925 (GeneID 7374) which fuses PA14_69920 (GeneID 6913) and PA14_69930 (GeneID 6912). Homology: gb|AAG08682.1|AE004942_5 (AE004942) pyruvate dehydrogenase (cytochrome) [Pseudomonas aeruginosa PAO1]
Identities = 188/189 (99%), Positives = 189/189 (100%)
Sequence:
ATGGTCTGGCTGTTGCGTCACATCCACAGCAACGGCAAGCGCCGCACCCTCACCAGCCTGGTCCACGGCACC
ATGGCCAACGCCATGCCCCAGGCGCTGGGACTGAAGAAGGCCTACCCCGAGCGCCAGGTGATCTCGATCTCC
GGCGACGGCGGCCTGGCCATGCTGCTCGGCGACCTGCTGACGGCCATCCAGGAAAAACTGCCGATCAAGGTA
GTGGTGCTGAACAATGCCTCGCTGAACTTCGTCGAGCTGGAACAGAAGGTCGAGGGCCTGCTGGACAACTAC
ACCGACCTGCTCAACCCGGACTTCGCCCGGCTCGCCGAGGTGATCGGCTTCCACGGACGCAAGGTGACGCGC
TCCGAGGATCTCGAGGCGGCGGTGCAGGAGTTCCTCGCCCAGCCCGGTCCGGCGCTGCTGGACGTGCATACC
AACCCTGCGGAGCTGGTGATGCCGCCGAAGATCGAGTTCGGCCAGGTCGCCGACACCGCCCTCTACGCCGCC
AAGGCCGTGCTCAGCGGGCGCTTCAAGGACGTCGAGACGCTACTGGTGAACAACCTGCTGAAATGA
Translation:
MVWLLRHIHSNGKRRTLTSLVHGTMANAMPQALGLKKAYPERQVISISGDGGLAMLLGDLLTAIQEKLPIKV
VVLNNASLNFVELEQKVEGLLDNYTDLLNPDFARLAEVIGFHGRKVTRSEDLEAAVQEFLAQPGPALLDVHT
NPAELVMPPKIEFGQVADTALYAAKAVLSGRFKDVETLLVNNLLK*
AnnotationID:6913GeneID:6912
AnnotatorUID: danlee
Modification Date/Time: 2006-01-31 18:06:31
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):energy metabolism
EC Number:1.2.2.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP88293.1| (AY321490) PoxB [Pseudomonas fluorescens]
          Length = 414

 Score =  190 bits (482), Expect = 4e-48
 Identities = 99/188 (52%), Positives = 127/188 (67%)

>gb|AAM35116.1| (AE011647) pyruvate dehydrogenase [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 575

 Score =  187 bits (474), Expect = 4e-47
 Identities = 97/186 (52%), Positives = 122/186 (65%)

>gb|AAM39525.1| (AE012116) pyruvate dehydrogenase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 575

 Score =  185 bits (469), Expect = 1e-46
 Identities = 97/186 (52%), Positives = 122/186 (65%)








 
Structural Features:






   
Genomic Context:






   
Comment:
possible frameshift with gene #6913


















    ReferenceID:13520




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30903




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34783




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6912_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6912
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
202979
                           gb|AAO76929.1|
                           (AE016933) pyruvate dehydrogenase [cytochrome] [Bacteroides thetaiotaomicron VPI-5482]
                           230
                           38.26
                           55.21
                           43
                           432.0
     

     
     
8051
                           PA5297_tr
                           translation of PA5297
                           572
                           32.86
                           33.04
                           383
                           943.0
     

     
     
202970
                           gb|AAG08682.1|AE004942_5
                           (AE004942) pyruvate dehydrogenase (cytochrome) [Pseudomonas aeruginosa PAO1]
                           572
                           32.86
                           33.04
                           383
                           943.0
     

     
     
202971
                           gb|AAP88293.1|
                           (AY321490) PoxB [Pseudomonas fluorescens]
                           414
                           23.91
                           30.67
                           225
                           481.0
     

     
     
202972
                           gb|AAM35116.1|
                           (AE011647) pyruvate dehydrogenase [Xanthomonas axonopodis pv. citri str. 306]
                           576
                           16.84
                           21.18
                           388
                           471.0
     

     






      

          
GC ORFID: 49914How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5502911Stop: 5503480

          
Length: 570


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5297 translation of PA5297Homolog Bit Score 367.0

          
Other Homologs:  t_PA5297 translation of PA5297 (BLASTP 367), psyr_15may02_Scaffold1_revised_gene1280 related to: gi|16121638|ref|NP_404951.1| (NC_003143) pyruvate dehydrogenase [cytochrome] [Yersinia pestis] emb|CAC90187.1| (AJ414147) pyruvate dehydrogenase [cytochrome] [Yersinia pestis] (BLASTP 175)

          
GC ORF Sequence

           
ATGGTCTGGCTGTTGCGTCACATCCACAGCAACGGCAAGCGCCGCACCCTCACCAGCCTGGTCCACGGCACC 
ATGGCCAACGCCATGCCCCAGGCGCTGGGACTGAAGAAGGCCTACCCCGAGCGCCAGGTGATCTCGATCTCC 
GGCGACGGCGGCCTGGCCATGCTGCTCGGCGACCTGCTGACGGCCATCCAGGAAAAACTGCCGATCAAGGTA 
GTGGTGCTGAACAATGCCTCGCTGAACTTCGTCGAGCTGGAACAGAAGGTCGAGGGCCTGCTGGACAACTAC 
ACCGACCTGCTCAACCCGGACTTCGCCCGGCTCGCCGAGGTGATCGGCTTCCACGGACGCAAGGTGACGCGC 
TCCGAGGATCTCGAGGCGGCGGTGCAGGAGTTCCTCGCCCAGCCCGGTCCGGCGCTGCTGGACGTGCATACC 
AACCCTGCGGAGCTGGTGATGCCGCCGAAGATCGAGTTCGGCCAGGTCGCCGACACCGCCCTCTACGCCGCC 
AAGGCCGTGCTCAGCGGGCGCTTCAAGGACGTCGAGACGCTACTGGTGAACAACCTGCTGAAATGA