ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6899

TrivialName: PA14_69490

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_69490

PAO1 Ortholog Locus:

Sequence Length: 2004

Protein Length: 667

Start: 6196263

Stop: 6198266

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 168/587 (28%), Positives = 200/587 (34%), Gaps = 104/587 (17%)

Sequence:

GTGCAGCCCAGGGTGAGGGCCACCACCAACAGGCAGCAGGCACTCCCCGCCAGCGCCACCGGCAGGCGCGCG
AGCAATGGCCGCAGGCGGCAGAACAGCGCCGCCGAGAGCAGTACGATCCACTGCACGAACAGCGACGCCAGG
GCCAGGCGCACCCAGTTGAAGCTCGGCGTCATCGGCTCCGCCAGCACCAGCACCAGCACCAGCAGCTCCGCC
AGCAGCACCAGGGTGAACAGGGCTTCGGCTTCGCAGAGCTCGGGAATGAAGAAGTCGTCTTGGACGGCCGGC
CGGGTCGAGCGGCCGGGCTTGAATCGGATAGGCATCGACAGAGTTTCCGCAAGGCCCGGGGCGCCCGCAAGA
CAGCCGCGGGCGTACGGGCGAAATAAAGCACCGAAATGCCATCTGCCGCAAAAAACCGCGAAACAGCGCTCG
TTCCGGCTTCGTCGACGAGCCGCCGGTTTTTCCTCCCGGCCTGCTATCATCGTCGCACTTTGCCCGTCACGC
AGGCCGCGCGGCCTGTCCGTTTCTTGTTGCAGCGAGAGATACCATGAGCGTAGAGAAGACCAACCAGTCCTG
GGGCGGCCGCTTCAGCGAGCCCGTCGACGCCTTCGTCGCCCGTTTCACCGCCTCCGTCGACTTCGACAAGCG
TCTCTACCGCCACGACATCATGGGTTCCATCGCCCACGCCACGATGCTGGCCAAGGTCGGCGTGCTGAGCGA
CGCCGAGCGCGATGCGATCGTAGACGGCCTGCAACAGATCCAGGCGGAAATCGAAGCCGGCAGCTTCGACTG
GCGCGTCGACCTGGAAGACGTGCACATGAACATCGAGGCGCGCCTGACCGACCGCATCGGCGTCACCGGCAA
GAAGCTCCACACCGGTCGCTCGCGCAACGACCAGGTGGCCACCGACATCCGCCTCTGGCTACGCGACGAGAT
CGACACCATCCTCGCCGAGATCACCCGCCTGCAGGAGGGCCTGCTGGGCCTGGCCGAAGCGGAAGCCGACAC
CATCATGCCCGGTTTCACCCACCTGCAGACCGCCCAGCCGGTGACCTTCGGCCACCACCTGCTGGCCTGGTT
CGAGATGCTCGGCCGCGACTACGAGCGCCTGGTCGACTGCCGCAAGCGGGTCAACCGCATGCCGCTCGGCTC
GGCGGCCCTGGCCGGCACCACCTACCCGATCCAGCGCGAGATCACCTGCCAGTTGCTGGGCTTCGACGCGGT
TGGCGGCAACTCCCTGGACGGCGTCTCCGACCGCGACTTCGCCATCGAATTCTGCGCCGCCGCCAGCCTGGC
GATGATGCACCTGTCGCGCTTCTCGGAAGAGCTGGTGCTGTGGACCAGCGCGCAGTTCCAGTTCATCGACCT
GCCCGACCGCTTCTGCACCGGCTCCTCGATCATGCCGCAGAAGAAGAACCCCGACGTGCCGGAGCTGGTACG
CGGCAAGTCCGGCCGGGTGTTCGGCGCCCTCACCGGCTTGCTGACCCTGATGAAGGGCCAGCCGCTGGCCTA
CAACAAGGACAACCAGGAAGACAAGGAACCGCTGTTCGACGCCGCCGACACCCTGCGCGACAGCCTGCGCGC
CTTCGCCGACATGGTCCCGGCGATCCGGCCCCGGCGCGAGATCATGCGCGAGGCGGCACGCCGCGGTTTCTC
CACCGCCACCGACCTGGCCGACTACCTGGTGCGCAAGGGCCTGCCGTTCCGCGACTGCCACGAGATCGTCGG
CCACGCAGTGAAGTACGGCGTGGACAGCGGCAAGGACCTCGCCGAGATGAGCCTCGACGAACTGCGCCGCTT
CAGCGAGCAGATCGACGCCGACGTCTTCGACGTGCTGACCCTGGAAGGCTCGGTCAACGCCCGCGACCATAT
CGGCGGCACCGCGCCGAACCAGGTCCGTGCCGCCGTCGCCCGCGGCCGGCAGTTGCTCGCCCAGCGCTGAGG
CTTGCGACAATCCGACCTCGCACCCAGCAGGGTCGGGCGATACGCGGAGCGCAGCCTTAG

Translation:

MQPRVRATTNRQQALPASATGRRASNGRRRQNSAAESSTIHCTNSDARARRTQLKLGVIGSASTSTSTSSSA
SSTRVNRASASQSSGMKKSSWTAGRVERPGLNRIGIDRVSARPGAPARQPRAYGRNKAPKCHLPQKTAKQRS
FRLRRRAAGFSSRPAIIVALCPSRRPRGLSVSCCSERYHERREDQPVLGRPLQRARRRLRRPFHRLRRLRQA
SLPPRHHGFHRPRHDAGQGRRAERRRARCDRRRPATDPGGNRSRQLRLARRPGRRAHEHRGAPDRPHRRHRQ
EAPHRSLAQRPGGHRHPPLATRRDRHHPRRDHPPAGGPAGPGRSGSRHHHARFHPPADRPAGDLRPPPAGLV
RDARPRLRAPGRLPQAGQPHAARLGGPGRHHLPDPARDHLPVAGLRRGWRQLPGRRLRPRLRHRILRRRQPG
DDAPVALLGRAGAVDQRAVPVHRPARPLLHRLLDHAAEEEPRRAGAGTRQVRPGVRRPHRLADPDEGPAAGL
QQGQPGRQGTAVRRRRHPARQPARLRRHGPGDPAPARDHARGGTPRFLHRHRPGRLPGAQGPAVPRLPRDRR
PRSEVRRGQRQGPRRDEPRRTAPLQRADRRRRLRRADPGRLGQRPRPYRRHRAEPGPCRRRPRPAVARPALR
LATIRPRTQQGRAIRGAQP*

AnnotationID:6900 GeneID:6899

AnnotatorUID: diggins

Modification Date/Time: 2004-10-15 22:10:08

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16645

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30878

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34801

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6899_cdd.html

URL:

GC ORFID: `49901`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5459950`	Stop: `5461953`
Length: `2004`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCAGCCCAGGGTGAGGGCCACCACCAACAGGCAGCAGGCACTCCCCGCCAGCGCCACCGGCAGGCGCGCG AGCAATGGCCGCAGGCGGCAGAACAGCGCCGCCGAGAGCAGTACGATCCACTGCACGAACAGCGACGCCAGG GCCAGGCGCACCCAGTTGAAGCTCGGCGTCATCGGCTCCGCCAGCACCAGCACCAGCACCAGCAGCTCCGCC AGCAGCACCAGGGTGAACAGGGCTTCGGCTTCGCAGAGCTCGGGAATGAAGAAGTCGTCTTGGACGGCCGGC CGGGTCGAGCGGCCGGGCTTGAATCGGATAGGCATCGACAGAGTTTCCGCAAGGCCCGGGGCGCCCGCAAGA CAGCCGCGGGCGTACGGGCGAAATAAAGCACCGAAATGCCATCTGCCGCAAAAAACCGCGAAACAGCGCTCG TTCCGGCTTCGTCGACGAGCCGCCGGTTTTTCCTCCCGGCCTGCTATCATCGTCGCACTTTGCCCGTCACGC AGGCCGCGCGGCCTGTCCGTTTCTTGTTGCAGCGAGAGATACCATGAGCGTAGAGAAGACCAACCAGTCCTG GGGCGGCCGCTTCAGCGAGCCCGTCGACGCCTTCGTCGCCCGTTTCACCGCCTCCGTCGACTTCGACAAGCG TCTCTACCGCCACGACATCATGGGTTCCATCGCCCACGCCACGATGCTGGCCAAGGTCGGCGTGCTGAGCGA CGCCGAGCGCGATGCGATCGTAGACGGCCTGCAACAGATCCAGGCGGAAATCGAAGCCGGCAGCTTCGACTG GCGCGTCGACCTGGAAGACGTGCACATGAACATCGAGGCGCGCCTGACCGACCGCATCGGCGTCACCGGCAA GAAGCTCCACACCGGTCGCTCGCGCAACGACCAGGTGGCCACCGACATCCGCCTCTGGCTACGCGACGAGAT CGACACCATCCTCGCCGAGATCACCCGCCTGCAGGAGGGCCTGCTGGGCCTGGCCGAAGCGGAAGCCGACAC CATCATGCCCGGTTTCACCCACCTGCAGACCGCCCAGCCGGTGACCTTCGGCCACCACCTGCTGGCCTGGTT CGAGATGCTCGGCCGCGACTACGAGCGCCTGGTCGACTGCCGCAAGCGGGTCAACCGCATGCCGCTCGGCTC GGCGGCCCTGGCCGGCACCACCTACCCGATCCAGCGCGAGATCACCTGCCAGTTGCTGGGCTTCGACGCGGT TGGCGGCAACTCCCTGGACGGCGTCTCCGACCGCGACTTCGCCATCGAATTCTGCGCCGCCGCCAGCCTGGC GATGATGCACCTGTCGCGCTTCTCGGAAGAGCTGGTGCTGTGGACCAGCGCGCAGTTCCAGTTCATCGACCT GCCCGACCGCTTCTGCACCGGCTCCTCGATCATGCCGCAGAAGAAGAACCCCGACGTGCCGGAGCTGGTACG CGGCAAGTCCGGCCGGGTGTTCGGCGCCCTCACCGGCTTGCTGACCCTGATGAAGGGCCAGCCGCTGGCCTA CAACAAGGACAACCAGGAAGACAAGGAACCGCTGTTCGACGCCGCCGACACCCTGCGCGACAGCCTGCGCGC CTTCGCCGACATGGTCCCGGCGATCCGGCCCCGGCGCGAGATCATGCGCGAGGCGGCACGCCGCGGTTTCTC CACCGCCACCGACCTGGCCGACTACCTGGTGCGCAAGGGCCTGCCGTTCCGCGACTGCCACGAGATCGTCGG CCACGCAGTGAAGTACGGCGTGGACAGCGGCAAGGACCTCGCCGAGATGAGCCTCGACGAACTGCGCCGCTT CAGCGAGCAGATCGACGCCGACGTCTTCGACGTGCTGACCCTGGAAGGCTCGGTCAACGCCCGCGACCATAT CGGCGGCACCGCGCCGAACCAGGTCCGTGCCGCCGTCGCCCGCGGCCGGCAGTTGCTCGCCCAGCGCTGAGG CTTGCGACAATCCGACCTCGCACCCAGCAGGGTCGGGCGATACGCGGAGCGCAGCCTTAG