ViewGene

Locus Name:
GeneID:
Location:

GeneID:6894
TrivialName: PA14_69210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69210
PAO1 Ortholog Locus:
Sequence Length:1620
Protein Length:539
Start: 6173076
Stop: 6174695
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Identities = 156/566 (27%), Positives = 184/566 (32%), Gaps = 135/566 (23%)
Sequence:
ATGGCGCAGTTTTCCAATGGACTTGCAAAGCATGCCGCAAAAACCTGCCGAGGCATTCCCGCTGATTGCCGC
CCTGGACCTGGGTTCCAACAGTTTCCACCTCTGTCTGGCCAAGGCCAATATCCACGGCGAAGTCCGCATCCT
CGAACGGCTGGGCGAGAAGGTTCAACTGGCCGCCGGCCTCGACGAGGAGCGCAATCTCAGCGAGGAGGCCAC
CCAGCGTGGCCTCGACTGCCTACGCCGCTTCGCCCAGTTCATCAGCGGCATGCCCCAGGGTTCCGTACGCGT
GGTCGCGACCAACGCCTTGCGCGAGGCGCGCAACCGCAGCGATTTCATCCGTCGTGCGGAAGAGGTTCTCGG
CCATCCCGTGGAAGTCATCTCCGGCCGCGAGGAAGCCCGCCTGATCTACCTCGGCGTCGCCAACAGCATGCC
CGACAGCGGCGGTCGCCGGCTGGTCAGCGACATCGGCGGCGGCAGCACCGAGTTCATCATCGGCCAGGGTTT
CGAGTCCGAGCTGCGGGAAAGCCTGCAGATGGGTTGCGTCAGCTACACCCAACGCTACTTCCGCGACGGCAA
GATCACCCCGGCCCGCTACGCCCAGGCGTACACCGCCGCACGCCTGGAACTGATGGGCATCGAGAACAGCCT
GCGGCGCCTCGGCTGGCAACAGGCGGTCGGCGCCTCCGGCACCATCCGCGCAGTGGCGCTGGCGATCAAGGC
CGGCGGCCACGGCAACGGCGAGATAAGCCCGGACGGACTGGCCTGGCTGAAGCGCAAGGTGCTCAAGCTCGG
CGACGTGGAGAAGCTCGATCTGGAAGGGATCAAGCCGGACCGCCGGACCATCTTCCCGGCCGGACTGGCCAT
TCTCGAAGCGATCTTCGACGCGCTGGAACTGGAACAGATGGTTCACTCCGAGGGCGCCCTGCGCGAAGGCGT
TCTCTACGACCTGGTCGGCCGTCACCAGCACGAGGACGTGCGCGAACGCACCATCAGTTCGCTGATGCAGCG
CTACCACGTCGATCCGGAGCAGGCTTCGCGGGTGGAGGCCAAGGCCCTCAAGGTGCTTGCCGAAGTCGGCGA
CGCCTGGGAGCTGAACGACGAACTGCACCGCGACCTGCTGAGCTGGGGCGCACGGGTCCACGAGATCGGCCT
GGACATTGCCCATTACCACTACCACAAGCACGGCGCCTACCTGATCGAGCACTCCGACCTGGCTGGCTTCTC
GCGCCAGGACCAGCAGATGCTGTCGCTACTGGTACGCGGCCACCGCCGCAACATTCCGGCGGACAAGCTGGC
GGAGTTCGCCGCGGAAGGCGACAAGCTGGTGCGCCTGTGCATCGTGCTGCGCTTCGCGATCCTCTTCCACCA
CATTCGCGGCACCCAGGAAATGCCCTCGGTGCGCCTGAAGGCAGAGCCCAAGAGCCTTTCGGTGACCTTCCC
CGAGGGCTGGCTGGAAGCCAACCCGCTGACCCAGGCCGACTTCGCCCAGGAAGCCGAATGGCTCAAGCGGGT
CGGCTACAGCCTCAACGTGCGGTAAGCACCGGCGCGGCCAGCTTCTCCAGCAGGGTCGCCTGGGTATTGCGG
GGGTTCTGGTTACCGGTGGGACTGAGCCGCTGGTAG
Translation:
MAQFSNGLAKHAAKTCRGIPADCRPGPGFQQFPPLSGQGQYPRRSPHPRTAGREGSTGRRPRRGAQSQRGGH
PAWPRLPTPLRPVHQRHAPGFRTRGRDQRLARGAQPQRFHPSCGRGSRPSRGSHLRPRGSPPDLPRRRQQHA
RQRRSPAGQRHRRRQHRVHHRPGFRVRAAGKPADGLRQLHPTLLPRRQDHPGPLRPGVHRRTPGTDGHREQP
AAPRLATGGRRLRHHPRSGAGDQGRRPRQRRDKPGRTGLAEAQGAQARRRGEARSGRDQAGPPDHLPGRTGH
SRSDLRRAGTGTDGSLRGRPARRRSLRPGRPSPARGRARTHHQFADAALPRRSGAGFAGGGQGPQGACRSRR
RLGAERRTAPRPAELGRTGPRDRPGHCPLPLPQARRLPDRALRPGWLLAPGPADAVATGTRPPPQHSGGQAG
GVRRGRRQAGAPVHRAALRDPLPPHSRHPGNALGAPEGRAQEPFGDLPRGLAGSQPADPGRLRPGSRMAQAG
RLQPQRAVSTGAASFSSRVAWVLRGFWLPVGLSRW*
AnnotationID:6895GeneID:6894
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:13488
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30868
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49896How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5436763Stop: 5438382
Length: 1620
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCGCAGTTTTCCAATGGACTTGCAAAGCATGCCGCAAAAACCTGCCGAGGCATTCCCGCTGATTGCCGC
CCTGGACCTGGGTTCCAACAGTTTCCACCTCTGTCTGGCCAAGGCCAATATCCACGGCGAAGTCCGCATCCT
CGAACGGCTGGGCGAGAAGGTTCAACTGGCCGCCGGCCTCGACGAGGAGCGCAATCTCAGCGAGGAGGCCAC
CCAGCGTGGCCTCGACTGCCTACGCCGCTTCGCCCAGTTCATCAGCGGCATGCCCCAGGGTTCCGTACGCGT
GGTCGCGACCAACGCCTTGCGCGAGGCGCGCAACCGCAGCGATTTCATCCGTCGTGCGGAAGAGGTTCTCGG
CCATCCCGTGGAAGTCATCTCCGGCCGCGAGGAAGCCCGCCTGATCTACCTCGGCGTCGCCAACAGCATGCC
CGACAGCGGCGGTCGCCGGCTGGTCAGCGACATCGGCGGCGGCAGCACCGAGTTCATCATCGGCCAGGGTTT
CGAGTCCGAGCTGCGGGAAAGCCTGCAGATGGGTTGCGTCAGCTACACCCAACGCTACTTCCGCGACGGCAA
GATCACCCCGGCCCGCTACGCCCAGGCGTACACCGCCGCACGCCTGGAACTGATGGGCATCGAGAACAGCCT
GCGGCGCCTCGGCTGGCAACAGGCGGTCGGCGCCTCCGGCACCATCCGCGCAGTGGCGCTGGCGATCAAGGC
CGGCGGCCACGGCAACGGCGAGATAAGCCCGGACGGACTGGCCTGGCTGAAGCGCAAGGTGCTCAAGCTCGG
CGACGTGGAGAAGCTCGATCTGGAAGGGATCAAGCCGGACCGCCGGACCATCTTCCCGGCCGGACTGGCCAT
TCTCGAAGCGATCTTCGACGCGCTGGAACTGGAACAGATGGTTCACTCCGAGGGCGCCCTGCGCGAAGGCGT
TCTCTACGACCTGGTCGGCCGTCACCAGCACGAGGACGTGCGCGAACGCACCATCAGTTCGCTGATGCAGCG
CTACCACGTCGATCCGGAGCAGGCTTCGCGGGTGGAGGCCAAGGCCCTCAAGGTGCTTGCCGAAGTCGGCGA
CGCCTGGGAGCTGAACGACGAACTGCACCGCGACCTGCTGAGCTGGGGCGCACGGGTCCACGAGATCGGCCT
GGACATTGCCCATTACCACTACCACAAGCACGGCGCCTACCTGATCGAGCACTCCGACCTGGCTGGCTTCTC
GCGCCAGGACCAGCAGATGCTGTCGCTACTGGTACGCGGCCACCGCCGCAACATTCCGGCGGACAAGCTGGC
GGAGTTCGCCGCGGAAGGCGACAAGCTGGTGCGCCTGTGCATCGTGCTGCGCTTCGCGATCCTCTTCCACCA
CATTCGCGGCACCCAGGAAATGCCCTCGGTGCGCCTGAAGGCAGAGCCCAAGAGCCTTTCGGTGACCTTCCC
CGAGGGCTGGCTGGAAGCCAACCCGCTGACCCAGGCCGACTTCGCCCAGGAAGCCGAATGGCTCAAGCGGGT
CGGCTACAGCCTCAACGTGCGGTAAGCACCGGCGCGGCCAGCTTCTCCAGCAGGGTCGCCTGGGTATTGCGG
GGGTTCTGGTTACCGGTGGGACTGAGCCGCTGGTAG