ViewGene
Locus Name:
GeneID:
Location:

GeneID:6888
TrivialName: PA14_68960
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68960
PAO1 Ortholog Locus:
Sequence Length:483
Protein Length:160
Start: 6151448
Stop: 6150967
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GID3881 (PA14_68950) and GID6888 (PA14_68960) replaced by GID7405 (PA14_68955). Homology: gb|AAG08606.1|AE004935_3 (AE004935) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
Identities = 144/145 (99%), Positives = 144/145 (99%)
Sequence:
ATGGCTTCCGCGCTGCCCTCGGCGAAGCTTTCGAACGGCGCCtggGGCGCCATCCTGCATGCCGACCGGCGC
CTGTGCATCCCGCTGCGCCAGCGGCACGCCAAGCGTTACGTCGAGCCGGGCCTGGCGCTGGTCGGCGACGCT
GCGCACACCATCCACCCGCTGGCCGGACAGGGCGTGAACCTGGGTTTCCTCGATGCGGCGGTGCTGTCCGAG
GTTCTGTTGCATGCCCTGGAGCGCGGCGAACGGCTTGCCGACGAACGCGTGCTGAGTCGCTTCGAGCGGCGG
CGGATGCCGCACAACCTGGGCATGATGACGGCGATGGAAGGCTTCGAACGCCTGTTCCAGGCCGACCGGTTG
CCGCTGCGCTGGCTGCGCAACGCCGGCCTGCGCCTGGTCGACGGCCATCACGAGGCCAAGGCGCTGTTCGTC
CGCCAGGCGCTTGGCCTCAGCGGCGACCTGCCGGCGCTGGCACGAGTCTGA
Translation:
MASALPSAKLSNGAWGAILHADRRLCIPLRQRHAKRYVEPGLALVGDAAHTIHPLAGQGVNLGFLDAAVLSE
VLLHALERGERLADERVLSRFERRRMPHNLGMMTAMEGFERLFQADRLPLRWLRNAGLRLVDGHHEAKALFV
RQALGLSGDLPALARV*
AnnotationID:6889GeneID:6888
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 14:02:28
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydrolase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN70762.1|AE016720_5 (AE016793) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
           hydroxylase [Pseudomonas putida KT2440]
          Length = 407

 Score =  235 bits (600), Expect = 6e-62
 Identities = 116/147 (78%), Positives = 131/147 (89%)

>gb|AAO58647.1| (AE016875) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
           hydroxylase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 409

 Score =  231 bits (590), Expect = 9e-61
 Identities = 114/148 (77%), Positives = 129/148 (87%)

>gb|AAF95616.1| (AE004317) visC protein [Vibrio cholerae]
          Length = 409

 Score =  125 bits (315), Expect = 7e-29
 Identities = 67/136 (49%), Positives = 88/136 (64%)








 
Structural Features:






   
Genomic Context:






   
Comment:
GID3881 (PA14_68950) and GID6888 (PA14_68960) replaced by GID7405 (PA14_68955).


















    ReferenceID:13480




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30856




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34853




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6888_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6888
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8048
                           PA5221_tr
                           translation of PA5221
                           410
                           36.09
                           36.58
                           255
                           729.0
     

     
     
202742
                           gb|AAG08606.1|AE004935_3
                           (AE004935) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
                           410
                           36.09
                           36.58
                           255
                           729.0
     

     
     
202743
                           gb|AAN70762.1|AE016720_5
                           (AE016793) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Pseudomonas putida KT2440]
                           409
                           29.09
                           32.76
                           251
                           596.0
     

     
     
202744
                           gb|AAO58647.1|
                           (AE016875) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Pseudomonas syringae pv. tomato str. DC3000]
                           411
                           28.22
                           31.87
                           253
                           582.0
     

     
     
202778
                           emb|CAC89752.1|
                           (AJ414145) putative monooxygenase [Yersinia pestis CO92]
                           408
                           17.64
                           23.03
                           250
                           249.0
     

     






      

          
GC ORFID: 49890How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5415135Stop: 5414653

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5221 translation of PA5221Homolog Bit Score 288.0

          
Other Homologs:  t_PA5221 translation of PA5221 (BLASTP 288), psyr_15may02_Scaffold2_revised_gene3231 related to: gi|15600414|ref|NP_253908.1| (NC_002516) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa] pir||E82992 probable FAD-dependent monooxygenase PA5221 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08606.1|AE004935_3 (AE004935) p-TRUNCATED- (BLASTP 232)

          
GC ORF Sequence

           
ATGGCTTCCGCGCTGCCCTCGGCGAAGCTTTCGAACGGCGCCtggGGCGCCATCCTGCATGCCGACCGGCGC 
CTGTGCATCCCGCTGCGCCAGCGGCACGCCAAGCGTTACGTCGAGCCGGGCCTGGCGCTGGTCGGCGACGCT 
GCGCACACCATCCACCCGCTGGCCGGACAGGGCGTGAACCTGGGTTTCCTCGATGCGGCGGTGCTGTCCGAG 
GTTCTGTTGCATGCCCTGGAGCGCGGCGAACGGCTTGCCGACGAACGCGTGCTGAGTCGCTTCGAGCGGCGG 
CGGATGCCGCACAACCTGGGCATGATGACGGCGATGGAAGGCTTCGAACGCCTGTTCCAGGCCGACCGGTTG 
CCGCTGCGCTGGCTGCGCAACGCCGGCCTGCGCCTGGTCGACGGCCATCACGAGGCCAAGGCGCTGTTCGTC 
CGCCAGGCGCTTGGCCTCAGCGGCGACCTGCCGGCGCTGGCACGAGTCTGA