ViewGene
Locus Name:
GeneID:
Location:

GeneID:6887
TrivialName: PA14_68910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68910
PAO1 Ortholog Locus:
Sequence Length:939
Protein Length:312
Start: 6147833
Stop: 6148771
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAB62047.1| (D85415) ORF1~unknown product [Pseudomonas putida]
Identities = 49/165 (29%), Positives = 62/165 (37%), Gaps = 26/165 (15%)
Sequence:
ATGATAAGAAATCTCGCTTGCGAACCCGCGCGACTAAATGTGTCGGGGTGTTTCGCCTGCGTCCAGGCCGCC
GAGGATGGCGAGAAACGCCTCCACCGCGGCGCTGCGGCCATGGCGGCGGGTGAAGACGAGGAAATCGGCCAG
CGCCTCGGGCTCGGCCAGCGGGCGATAGACGACTCCGGCCCGGGCCAGCGCGGTGCTGCAACGCGGCACCAG
GGCAACGCCCTGGCCGGCCGCGACCAGGGCGATGATCGAGGTGATCTGGCGTCCGGCCGGTCCCCTCGTCAG
CGCCAGCCCGGCCTTCCGGTAGAGGCGCTCAATCAGTTCGTTGAGGCCGGAGCCGTAGTCCAGCGGAAACAG
GATCAGCGGCCGATCACGCAGATCGTACAGGTCGATCCGCTCTTGCCGCGCCAGCGGATCGCCGTTGGGCAC
GGCCACCACCAGCGGCTCGCCGCCCAAGGCCAGCACCTCGATGCCGACCTGGCCTTCCGGCGGCGGCAGGCG
CCCCAGCCCCACATCGATGCCGCCTTCGGCGATCTGCGCCCATTGCGCTGCCGAAGCGCCTTCGAGCAGCTC
CAGTTGCACCTCCGGATGGCGCTCGCGGAACAGTCGGATCGCCTCGGTGAACAGGTCCGACAGGGCGATGGA
GCTGGCGTAGCCGAGGGTCAGGTGGCCGGCCAGCCCCTGCGCCAGCTTGCGGGCGAAGCCGGCGGTGCGCTC
CAGTTGGTCCAGCAGGCCGCGTGCGTAAGGCAGGAACAGGCTGCCCTCGGCGGTGAGGGTCACCGCCCGGCT
GGAGCGGTCGAACAGGCGAAAGCCCAGCTCTTCCTCCAGCGCGGATATCTGCCGGGTCAAGGGCGGCTGCGC
CATGTGCAGGCGCTGGGCGGCGCGGCCGAAATGCAGGGTTTCGGCAACGGCTGCGAAGCAGCGCAGGCGGCG
TAG
Translation:
MIRNLACEPARLNVSGCFACVQAAEDGEKRLHRGAAAMAAGEDEEIGQRLGLGQRAIDDSGPGQRGAATRHQ
GNALAGRDQGDDRGDLASGRSPRQRQPGLPVEALNQFVEAGAVVQRKQDQRPITQIVQVDPLLPRQRIAVGH
GHHQRLAAQGQHLDADLAFRRRQAPQPHIDAAFGDLRPLRCRSAFEQLQLHLRMALAEQSDRLGEQVRQGDG
AGVAEGQVAGQPLRQLAGEAGGALQLVQQAACVRQEQAALGGEGHRPAGAVEQAKAQLFLQRGYLPGQGRLR
HVQALGGAAEMQGFGNGCEAAQAA*
AnnotationID:6888GeneID:6887
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 05:05:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13478




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30854




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49889How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5411519Stop: 5412457

          
Length: 939


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGATAAGAAATCTCGCTTGCGAACCCGCGCGACTAAATGTGTCGGGGTGTTTCGCCTGCGTCCAGGCCGCC 
GAGGATGGCGAGAAACGCCTCCACCGCGGCGCTGCGGCCATGGCGGCGGGTGAAGACGAGGAAATCGGCCAG 
CGCCTCGGGCTCGGCCAGCGGGCGATAGACGACTCCGGCCCGGGCCAGCGCGGTGCTGCAACGCGGCACCAG 
GGCAACGCCCTGGCCGGCCGCGACCAGGGCGATGATCGAGGTGATCTGGCGTCCGGCCGGTCCCCTCGTCAG 
CGCCAGCCCGGCCTTCCGGTAGAGGCGCTCAATCAGTTCGTTGAGGCCGGAGCCGTAGTCCAGCGGAAACAG 
GATCAGCGGCCGATCACGCAGATCGTACAGGTCGATCCGCTCTTGCCGCGCCAGCGGATCGCCGTTGGGCAC 
GGCCACCACCAGCGGCTCGCCGCCCAAGGCCAGCACCTCGATGCCGACCTGGCCTTCCGGCGGCGGCAGGCG 
CCCCAGCCCCACATCGATGCCGCCTTCGGCGATCTGCGCCCATTGCGCTGCCGAAGCGCCTTCGAGCAGCTC 
CAGTTGCACCTCCGGATGGCGCTCGCGGAACAGTCGGATCGCCTCGGTGAACAGGTCCGACAGGGCGATGGA 
GCTGGCGTAGCCGAGGGTCAGGTGGCCGGCCAGCCCCTGCGCCAGCTTGCGGGCGAAGCCGGCGGTGCGCTC 
CAGTTGGTCCAGCAGGCCGCGTGCGTAAGGCAGGAACAGGCTGCCCTCGGCGGTGAGGGTCACCGCCCGGCT 
GGAGCGGTCGAACAGGCGAAAGCCCAGCTCTTCCTCCAGCGCGGATATCTGCCGGGTCAAGGGCGGCTGCGC 
CATGTGCAGGCGCTGGGCGGCGCGGCCGAAATGCAGGGTTTCGGCAACGGCTGCGAAGCAGCGCAGGCGGCG 
TAG